cluster # 7938

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Schistosoma mansoni
cluster # 7938 cluster # 7938 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7938#0 length = 469 sequences # 4

consensus_7938#1 length = 404 sequences # 2

consensusID : consensus_7938#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 469
fasta sequence

                              [ACTGTTAGATATAATTGTAGACGCTGACGATTTTATGTATCGAAAATACAACCTCAAGAAAGACAACATTGTACTAGCTGGAGAAAAACATATGACTATTTACGACGAAATTCAAAAGAAAAAAAAATTGAATTATATTGCTGGAGGAGCTACATTGAACACAGTTAAAATGATTCAGTGGATAATTCAGAAACCATTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGGGAAATATATTAAGAATGATTGTTCGGCGTTGGACTTAGTGACTGAATTCCAAATCGCGGAGGAACCGCTTATGACCGGAAAGGTAGCAGTCCTAGTCAGCGAAAAATTACGTAGCATGGTTACCTACCTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTGGAGTCTTGTGGAAAAAGCACAAGTGTATTATATTGCAGGTTTCGTAATA]

[+] EMBL CD186461             [ACTGTTAGATATAATTGTAGACGCTGACGATTTTATGTATCGAAAATACAACCTCAAGAAAGACAACATTGTACTAGCTGGAGAAAAACATATGACTATTTACGACGAAATTCAAAAGAAAAAAAAATTGAATTATATTGCTGGAGGAGCTACATTGAACACAGTTAAAATGATTCAGTGGATAATTCGGAAACCATTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGGGAAATATATTA                                                                                                                                                                                                                          ]
[+] EMBL CD136730             [                                                           accttcatATTGTACTAGCTGAAGAAAAACATATGACTATTTACGACGAAATTCAAAAGAAAAAAAAATTGAATTATATTGCTGGAGGAGCTACATTGAACACAGTTAAAATGATTCAGTGGATAATTCAGAAACCATTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGGGAAATATATTAAGAATGATTGTTCGGCGTTGGACTTAGTGACTGAATTCCAAATCGCGGAGGAACCGCTTATGACCGGAAAGGTAGCAGTCCTAGTCAGCGAAAAATTACGTAGCATGGTTACCTACCTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTGGAGTCTTGTGGAAAAAGCACAAGTGTATTATATTGCAGGTTTCGTAAT ]
[-] EMBL CD158060             [                                                                                                      CGNCGAAATTCAAAAGAAAAAAAAA TGAATTATATTGCTGGAGGAGCTACATTGAACACAGTTAAAATGATTCAGTGGATAATTCAGAAACCGTTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGGGAAATATATTAAGAATGATTGTTCGGCGTTGGACTTAGTGACTGAATTCCAAATCGCGGAGGAACCGCTTATGACCGGAAAGGTTGCAGTCCTAGTCAGCGAAAAATTACGTAGCATGGTTACCTACCTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTGGAGTCTTGTGGAAAAAGCACAAGTGTATTACATTGCAGGTTTCGTAATA]
[-] EMBL BG932742             [                                                                                                                                                                                                                                                                                                            GGAACCGCTTATGACCGGAAAGGTAGCAGTCCTAGTCAGCGAAAAATTACGTAGCATGGTTACCTACCTAGGAGCTGCGTGTGATCTTTCTTTAGC                                                                         ]




>consensus_7938#0
ACTGTTAGATATAATTGTAGACGCTGACGATTTTATGTATCGAAAATACAACCTCAAGAA
AGACAACATTGTACTAGCTGGAGAAAAACATATGACTATTTACGACGAAATTCAAAAGAA
AAAAAAATTGAATTATATTGCTGGAGGAGCTACATTGAACACAGTTAAAATGATTCAGTG
GATAATTCAGAAACCATTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGG
GAAATATATTAAGAATGATTGTTCGGCGTTGGACTTAGTGACTGAATTCCAAATCGCGGA
GGAACCGCTTATGACCGGAAAGGTAGCAGTCCTAGTCAGCGAAAAATTACGTAGCATGGT
TACCTACCTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTG
GAGTCTTGTGGAAAAAGCACAAGTGTATTATATTGCAGGTTTCGTAATA

consensusID : consensus_7938#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 404
fasta sequence

                              [GGAGCCACATTGAACACAGTCAAAATGATTCAGTGGATAATTCAGAAACCATTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGGGAAATATATTAAGAATGATTGTCGTGGGTTGGATGTACCGACAGATTTCCAGATCACAACGAAACCGTTGAAAACCGGAAAAGTAGCGGTCCTTATAAGCGAAAAACTACGTAGCATGGTTACCTACTTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTGGAGTCTTGTGGAAAAAGCACAAGTGTATTATATTGCAGGTTTCGTAATACATACCTGTTATGAAGGTATGCTGAAAGTAGCCAAACATTCTCTGGAACATGAGGAGTTGTTCTGCTTCAATCTCAGTGC]

[+] EMBL CD111353             [GGAGCCACATTGAACACAGTCAAAATGATTCAGTGGATAATTCAGAAACCATTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGGGAAATATATTAAGAATGATTGTCGTGGGTTGGATGTACCGACAGATTTCCAGATCACAACGAAACCGTTGAAAACCGGAAAAGTAGCGGTCCTTATAAGCGAAAAACTACGTAGCATGGTTACCTACTTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTGGAGTCTTGTGGAAAAAGCACAAGTGTATTATATTGCAGGTTTCGTAATACATACCTGTTATGAAGGTATGCTGAAAGTAGCCAAACATTCTCTGGAACATGAGGAGTTGTTCTGCTTCAATCTCAGTGC]
[+] EMBL CD111111             [                                                                                                                   GTCGTGGCTTGGATGTACCCACAGATTTCCAGATCACAACGAAACCGTTGAAAACCGGAAAAGTAGCGGTCCTTATAAGCGAAAAACTACGTAGCATGGTTACCTACTTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTGGAGTCTTGTGGAAAAAGCACAAGTGTATTATATTGCAGGTTTCGTAATAAATACCTGTTATGAAGGTATGCTGAAAATAGCCAAACATTCTCTGGAAAATGAGAAGTTGTTCTGCTTCAATCTCAGTGC]




>consensus_7938#1
GGAGCCACATTGAACACAGTCAAAATGATTCAGTGGATAATTCAGAAACCATTTGTGTGT
TCATACGTCGGATGCATAGGTGCCGACATACAAGGGAAATATATTAAGAATGATTGTCGT
GGGTTGGATGTACCGACAGATTTCCAGATCACAACGAAACCGTTGAAAACCGGAAAAGTA
GCGGTCCTTATAAGCGAAAAACTACGTAGCATGGTTACCTACTTAGGAGCTGCGTGTGAT
CTTTCTTTGGCCCACATTGAGCAACCACATGTTTGGAGTCTTGTGGAAAAAGCACAAGTG
TATTATATTGCAGGTTTCGTAATACATACCTGTTATGAAGGTATGCTGAAAGTAGCCAAA
CATTCTCTGGAACATGAGGAGTTGTTCTGCTTCAATCTCAGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7938#0      ACTGTTAGATATAATTGTAGACGCTGACGATTTTATGTATCGAAAATACAACCTCAAGAA 60
consensus_7938#1      ------------------------------------------------------------
                                                                                  

consensus_7938#0      AGACAACATTGTACTAGCTGGAGAAAAACATATGACTATTTACGACGAAATTCAAAAGAA 120
consensus_7938#1      ------------------------------------------------------------
                                                                                  

consensus_7938#0      AAAAAAATTGAATTATATTGCTGGAGGAGCTACATTGAACACAGTTAAAATGATTCAGTG 180
consensus_7938#1      -------------------------GGAGCCACATTGAACACAGTCAAAATGATTCAGTG 35
                                               ***** ************** **************

consensus_7938#0      GATAATTCAGAAACCATTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGG 240
consensus_7938#1      GATAATTCAGAAACCATTTGTGTGTTCATACGTCGGATGCATAGGTGCCGACATACAAGG 95
                      ************************************************************

consensus_7938#0      GAAATATATTAAGAATGATTGTTCGGCGTTGGACTTAGTGACTGAATTCCAAATCGCGGA 300
consensus_7938#1      GAAATATATTAAGAATGATTGTCGTGGGTTGGATGTACCGACAGATTTCCAGATCACAAC 155
                      **********************   * ******  **  *** ** ***** *** *   

consensus_7938#0      GGAACCGCTTATGACCGGAAAGGTAGCAGTCCTAGTCAGCGAAAAATTACGTAGCATGGT 360
consensus_7938#1      GAAACCGTTGAAAACCGGAAAAGTAGCGGTCCTTATAAGCGAAAAACTACGTAGCATGGT 215
                      * ***** * *  ******** ***** *****  * ********* *************

consensus_7938#0      TACCTACCTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTG 420
consensus_7938#1      TACCTACTTAGGAGCTGCGTGTGATCTTTCTTTGGCCCACATTGAGCAACCACATGTTTG 275
                      ******* ****************************************************

consensus_7938#0      GAGTCTTGTGGAAAAAGCACAAGTGTATTATATTGCAGGTTTCGTAATA----------- 469
consensus_7938#1      GAGTCTTGTGGAAAAAGCACAAGTGTATTATATTGCAGGTTTCGTAATACATACCTGTTA 335
                      *************************************************           

consensus_7938#0      ------------------------------------------------------------
consensus_7938#1      TGAAGGTATGCTGAAAGTAGCCAAACATTCTCTGGAACATGAGGAGTTGTTCTGCTTCAA 395
                                                                                  

consensus_7938#0      ---------
consensus_7938#1      TCTCAGTGC 404