cluster # 7950

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7950 cluster # 7950 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7950#0 length = 1316 sequences # 5

consensus_7950#1 length = 308 sequences # 1

consensusID : consensus_7950#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1316
fasta sequence

                              [CCCTCGGGCCAANAATTCGGCACGAGGCAAATCAATCTTGAGTTGTTAGGACTAGAAAAGATTTGTACAATTTTGTCGAATTTTCCCGATATTAATTTGGATAAATGTAGAACGGATGCTTTAAAATTAGCATTGGCTACACCTCGAAGCCTAACAGCTTGGTCGATTCCCAATAGACAGTATTTAAATCAGAAATGTATGGAAAATAAGGAATTAAAAGTTGAACACGTGAATTTCAAACGAAACGAATCATCAGCTTCTGATTTCTATGAACGTTTAACATCACAGAATGCATGGCCAGATCATTTAGAATGTGATTTCACAGAATCATTAGAATACTCTGATATCGATGTTGCATCAAATGTTTGTGAAAAGCTAAATATATCGTCGAATGCTTTTAAATTAGTCCCATTGCTCAGTGTTAAAGATGCCGTGGTGCATATCAAACGTCCGGATTGTCTAGTTTTAGATGTTCGTAATATCAAAGAATATAATAAATTTCATTTACCTAACAGTATTCATTGTGAGGTTTTCAGATCGGTAATGCTAGATTCTTCATTAATAGGAATTAAAGAAAACAATGATATATCTTCAACTACCACTGACTATAACAATACTTTCGCTCCAGAAAACTGGGAAGTGATTGATTATCCAAGTGGTAATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTGTGGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACTAAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAACGACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTTTGTATACTTTTCAGTAGCAACGACAGTATATCAAACTTCATAAACTCATGTTCTCAATAGTTTCTTGTTTTATCATCTCTTCCTCTCAAGATTGTTATTTGCATACCTCTTCATTCCTTTGGTTTCTGTTTAGTATCAGGATACAGTTTTAAGTTCTGTCTGTTAAATGACGTCAATATTTTCTTCTTTTTCAATATCTTATCAAAATATTTTTGATTTTGTAATATGTGATTGAACGACTGTTGCTAATAACCAGTGATTTGTAGTTTTCTGAATTTCCTTTATATCTTAACCGTCATTTATATGTATCTAATACTTTTCAGCATCACAAACTTGTTTTATTTATATTTTGTAAATTCTAATCAAAAGTGGCT--GGGTTGTCTGGTGAGAAATCAATAAAAATGTTTATAGCGCCT]

[+] EMBL CD080345             [CCCTCGGGCCAANAATTCGGCACGAGGCAAATCAATCTTGAGTTGTTAGGACTAGAAAAGATTTGTACAATTTTGTCGAATTTTCCCGATATTAATTTGGATAAATGTAGAACGGATGCTTTAAAATTAGCATTGGCTACACCTCGAAGCCTAACAGCTTGGTCGATTCCCAATAGACAGTATTTAAATCAGAAATGTATGGAAAATAAGGAATTAAAAGTTGAACACGTGAATTTCAAACGAAACGAATCATCAGCTTCTGATTTCTATGAACGTTTAACATCACAGAATGCATGGCCAGATCATTTAGAATGTGATTTCACAGAATCATTAGAATACTCTGATATCGATGTTGCATCAAATGTTTGTGAAAAGCTAAATATATCGTCGAATGCTTTTAAATTAGTCCCATTGCTCAGTGTTAAAGATGCCGTGGTGCATATCAAACGTCCGGATTGTCTAGTTTTAGATGTTCGTAATATCAAAGAATATAATAAATTTCATTTACCTAACAGTATTCATTGTGAGGTTTTCAGATCGGTAATGCTAGATTCTTCATTAATAGGAATTAAAGAAAACAATGATATATCTTCAACTACCACTGACTATAACAATACTTTCGCTCCAGAAAACTGGGAAGTGATTGATTATCCAAGTGGTAATCGTAATCGACCACANATCATACCGGAGTTTTTAGCCTTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD074444             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AAGTGATTGATTATCCAAGTGGTAATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTGTGGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACTAAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAACGACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTTTGTATACTTTTCAGTAGCAACGACAGTATATCAAACTTCATAAACTCATGTTCTCAATAGTTTCTTGTTTTATCATCTCTTCCTCTCAAGATTGTTATTTGCATACCTCTTCATTCCTTTGGTTTCTGTTTAGTATCAGGATACAGTTTTAAGTTCTGTCTGTTAAATGACGTCAATATTTTCTTCTTTTTCAATATCTTATCAAAATATTTTTGATTTTGTAATATGTGATTGAACGACTGTTGCTAATAACCAGTGATTTGTAGTTTTCTGAATTTCCTTTATATCTTAACCGTCATTTATATGTATCTAATACTTTTCAGCATCACAAACTTGTTTTATTTATATTTTGTAAATTCTAATCAAAAGTGGCT  GGGTTGTCTGGTGAGAAATCAATAAAAATGTTTA        ]
[-] EMBL CD074262             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AAGTGATTGATTATCCAAGTGGTAATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTGTGGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACTAAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAACGACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTTTGTATACTTTTCAGTAGCAACGACAGTATATCAAACTTCATAAACTCATGTTCTCAATAGTTTCTTGTTTTATCATCTCTTCCTCTCAAGATTGTTATTTGCATACCTCTTCATTCCTTTGGTTTCTGTTTAGTATCAGGATACAGTTTTAAGTTCTGTCTGTTAAATGACGTCAATATTTTCTTCTTTTTCAATATCTTATCAAAATATTTTTGATTTTGTAATATGTGATTGAACGACTGTTGCTAATAACCAGTGATTTGTAGTTTTCTGAATTTCCTTTATATCTTAACCGTCATTTATATGTATCTAATACTTTTCAGCATCACAAACTTGTTTTATTTATATTTTGTAAATTCTAATCAAAAGTGGCT  GGGTTGTCTGGTGAGAAATCAATAAAAATGTTTA        ]
[+] EMBL CD076694             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ctccAGTATTAAATCAAGTCAAGGAGTCACTAAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAACGACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTTTGTATACTTTTCAGTAGCAACGACAGTATATCAAACTTCATAAACTCATGTTCTCAATAGTTTCTTGTTTTATCATCTCTTCCTCTCAAGATTGTTATTTGCATACCTCTTCATTCCTTTGGTTTCTGTTTAGTATCAGGATACAGTTTTAAGTTCTGTCTGTTAAATGACGTCAATATTTTCTTCTTTTTCAATATCTTATCAAAATATTTTTGATTTTGTAATATGTGATTGAACGACTGTTGCTAATAACCAGTGATTTGTAGTTTTCTGAATTTCCTTTATATCTTAACCGTCATTTATATGTATCTAATACTTTTCAGCATCACAAACTTGTTTTATTTATATTTTGTAAATTCTAATCAAAAGTGGCTTGGGGTTGTCTGGTGAGAAATCAATAAAAATGTTTATAG     ]
[-] EMBL CD083119             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AATCAAGTCAAGGAGTCACTAAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAACGACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTTTGTATACTTTTCAGTAGCAACGACAGTATATCAAACTTCATAAACTCATGTTCTCAATAGTTTCTTGTTTTATCATCTCTTCCTCTCAAGATTGTTATTTGCATACCTCTTCATTCCTTTGGTTTCTGTTTAGTATCAGGATACAGTTTTAAGTTCTGTCTGTTAAATGACGTCAATATTTTCTTCTTTTTCAATATCTTATCAAAATATTTTTGATTTTGTAATATGTGATTGAACGACTGTTGCTAATAACCAGTGATTTGTAGTTTTCTGAATTTCCTTTATATCTTAACCGTCATTTATATGTATCTAATACTTTTCAGCATCACAAACTTGTTTTATTTATATTTTGTAAATTCTAATCAAAAGTGGCT  GGGTTGTCTGGTGAGAAATCAATAAAAATGTTTATAGCGCCT]




>consensus_7950#0
CCCTCGGGCCAANAATTCGGCACGAGGCAAATCAATCTTGAGTTGTTAGGACTAGAAAAG
ATTTGTACAATTTTGTCGAATTTTCCCGATATTAATTTGGATAAATGTAGAACGGATGCT
TTAAAATTAGCATTGGCTACACCTCGAAGCCTAACAGCTTGGTCGATTCCCAATAGACAG
TATTTAAATCAGAAATGTATGGAAAATAAGGAATTAAAAGTTGAACACGTGAATTTCAAA
CGAAACGAATCATCAGCTTCTGATTTCTATGAACGTTTAACATCACAGAATGCATGGCCA
GATCATTTAGAATGTGATTTCACAGAATCATTAGAATACTCTGATATCGATGTTGCATCA
AATGTTTGTGAAAAGCTAAATATATCGTCGAATGCTTTTAAATTAGTCCCATTGCTCAGT
GTTAAAGATGCCGTGGTGCATATCAAACGTCCGGATTGTCTAGTTTTAGATGTTCGTAAT
ATCAAAGAATATAATAAATTTCATTTACCTAACAGTATTCATTGTGAGGTTTTCAGATCG
GTAATGCTAGATTCTTCATTAATAGGAATTAAAGAAAACAATGATATATCTTCAACTACC
ACTGACTATAACAATACTTTCGCTCCAGAAAACTGGGAAGTGATTGATTATCCAAGTGGT
AATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTG
TGGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACT
AAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAAC
GACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTT
TGTATACTTTTCAGTAGCAACGACAGTATATCAAACTTCATAAACTCATGTTCTCAATAG
TTTCTTGTTTTATCATCTCTTCCTCTCAAGATTGTTATTTGCATACCTCTTCATTCCTTT
GGTTTCTGTTTAGTATCAGGATACAGTTTTAAGTTCTGTCTGTTAAATGACGTCAATATT
TTCTTCTTTTTCAATATCTTATCAAAATATTTTTGATTTTGTAATATGTGATTGAACGAC
TGTTGCTAATAACCAGTGATTTGTAGTTTTCTGAATTTCCTTTATATCTTAACCGTCATT
TATATGTATCTAATACTTTTCAGCATCACAAACTTGTTTTATTTATATTTTGTAAATTCT
AATCAAAAGTGGCTGGGTTGTCTGGTGAGAAATCAATAAAAATGTTTATAGCGCCT

consensusID : consensus_7950#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 308
fasta sequence

                              [TCGTCACGAGGAATCGTTTCGCTCCAGAAAACTGGGAAGTGATTGATTATCCAAGTGGTAATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTGTGGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACTAAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAACGACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTTTGTATACTT]

[+] EMBL CD077768             [TCGTCACGAGGAATCGTTTCGCTCCAGAAAACTGGGAAGTGATTGATTATCCAAGTGGTAATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTGTGGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACTAAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAACGACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTTTGTATACTT]




>consensus_7950#1
TCGTCACGAGGAATCGTTTCGCTCCAGAAAACTGGGAAGTGATTGATTATCCAAGTGGTA
ATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTGT
GGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACTA
AGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAACG
ACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTTT
GTATACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7950#0      CCCTCGGGCCAANAATTCGGCACGAGGCAAATCAATCTTGAGTTGTTAGGACTAGAAAAG 60
consensus_7950#1      ------------------------------------------------------------
                                                                                  

consensus_7950#0      ATTTGTACAATTTTGTCGAATTTTCCCGATATTAATTTGGATAAATGTAGAACGGATGCT 120
consensus_7950#1      ------------------------------------------------------------
                                                                                  

consensus_7950#0      TTAAAATTAGCATTGGCTACACCTCGAAGCCTAACAGCTTGGTCGATTCCCAATAGACAG 180
consensus_7950#1      ------------------------------------------------------------
                                                                                  

consensus_7950#0      TATTTAAATCAGAAATGTATGGAAAATAAGGAATTAAAAGTTGAACACGTGAATTTCAAA 240
consensus_7950#1      ------------------------------------------------------------
                                                                                  

consensus_7950#0      CGAAACGAATCATCAGCTTCTGATTTCTATGAACGTTTAACATCACAGAATGCATGGCCA 300
consensus_7950#1      ------------------------------------------------------------
                                                                                  

consensus_7950#0      GATCATTTAGAATGTGATTTCACAGAATCATTAGAATACTCTGATATCGATGTTGCATCA 360
consensus_7950#1      ------------------------------------------------------------
                                                                                  

consensus_7950#0      AATGTTTGTGAAAAGCTAAATATATCGTCGAATGCTTTTAAATTAGTCCCATTGCTCAGT 420
consensus_7950#1      ------------------------------------------------------------
                                                                                  

consensus_7950#0      GTTAAAGATGCCGTGGTGCATATCAAACGTCCGGATTGTCTAGTTTTAGATGTTCGTAAT 480
consensus_7950#1      ------------------------------------------------------------
                                                                                  

consensus_7950#0      ATCAAAGAATATAATAAATTTCATTTACCTAACAGTATTCATTGTGAGGTTTTCAGATCG 540
consensus_7950#1      ------------------------------------------------------------
                                                                                  

consensus_7950#0      GTAATGCTAGATTCTTCATTAATAGGAATTAAAGAAAACAATGATATATCTTCAACTACC 600
consensus_7950#1      ------------------------------------------------------------
                                                                                  

consensus_7950#0      ACTGACTATAACAATACTTTCGCTCCAGAAAACTGGGAAGTGATTGATTATCCAAGTGGT 660
consensus_7950#1      -TCGTCACGAGGAATCGTTTCGCTCCAGAAAACTGGGAAGTGATTGATTATCCAAGTGGT 59
                         * *   *  ***  *******************************************

consensus_7950#0      AATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTG 720
consensus_7950#1      AATCGTAATCGACCACAAATCATACCGGAGTTTTTAGCCTTTCTTATAAATCAAAAACTG 119
                      ************************************************************

consensus_7950#0      TGGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACT 780
consensus_7950#1      TGGCATCAAACAACACAAGCTAGACGGTTATTAAGTATTAAATCAAGTCAAGGAGTCACT 179
                      ************************************************************

consensus_7950#0      AAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAAC 840
consensus_7950#1      AAGGAACCAGTCAACACAGTAACACCATCTTCACCTGGGCTCCTAATTGTATGTGGCAAC 239
                      ************************************************************

consensus_7950#0      GACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTT 900
consensus_7950#1      GACGAGCGTCTATGTTGGGACTTGGCTTTTTGGCTCATAAAATGTGATATTGATCGTGTT 299
                      ************************************************************

consensus_7950#0      TGTATACTTTTCAGTAGCAACGACAGTATATCAAACTTCATAAACTCATGTTCTCAATAG 960
consensus_7950#1      TGTATACTT--------------------------------------------------- 308
                      *********                                                   

consensus_7950#0      TTTCTTGTTTTATCATCTCTTCCTCTCAAGATTGTTATTTGCATACCTCTTCATTCCTTT 1020
consensus_7950#1      ------------------------------------------------------------
                                                                                  

consensus_7950#0      GGTTTCTGTTTAGTATCAGGATACAGTTTTAAGTTCTGTCTGTTAAATGACGTCAATATT 1080
consensus_7950#1      ------------------------------------------------------------
                                                                                  

consensus_7950#0      TTCTTCTTTTTCAATATCTTATCAAAATATTTTTGATTTTGTAATATGTGATTGAACGAC 1140
consensus_7950#1      ------------------------------------------------------------
                                                                                  

consensus_7950#0      TGTTGCTAATAACCAGTGATTTGTAGTTTTCTGAATTTCCTTTATATCTTAACCGTCATT 1200
consensus_7950#1      ------------------------------------------------------------
                                                                                  

consensus_7950#0      TATATGTATCTAATACTTTTCAGCATCACAAACTTGTTTTATTTATATTTTGTAAATTCT 1260
consensus_7950#1      ------------------------------------------------------------
                                                                                  

consensus_7950#0      AATCAAAAGTGGCTGGGTTGTCTGGTGAGAAATCAATAAAAATGTTTATAGCGCCT 1316
consensus_7950#1      --------------------------------------------------------