cluster # 7957

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Schistosoma mansoni
cluster # 7957 cluster # 7957 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7957#0 length = 1128 sequences # 5

consensus_7957#1 length = 392 sequences # 1

consensusID : consensus_7957#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1128
fasta sequence

                              [CGGGCCAANAATTCGGCACGAGGACTATCATCAGGTCATGTTTAAATTTCTCTTCGATAAGCAGATCATTAAGCAGAATAGCATTCTAATGTATTTTAAGTAATATTTCTCTAAGTGCTGAATTTAATCTTCAGACTAATTCTGCCAGCATATGGGACTTGGAACCTATTACTACATTCCTAGTGCCAGTACATTACCAACTATGGCACTGGATACATCTAAATGAAAGTATTATTCCAAGCAGCGAAAGTCGATTAAGTTCTTTACCGACTACCAAATCAAGTGATCCACC-TTTTTTACGATTGGCATGGATTCGATTTCATGTGTTAAACGTTGATCAAGTCGAATTTATTAGTACATCCTCAAGTAAAGCAGTGACTTTTGGACATTTTTCCAATGAAGTAGCTGAATGTGTAATCAAAGCGCTTCGACCTTACCTTGGTCATCTTCTAAACAATAATCGTACACAAATCACACTGCGCATTCTGTTACAACCACCAGATCAGGTTGGCTATCGGATGGGTGCTTCGTGTCAGGAAGTATACACACTTCACAATCAACTAGATTCATCGAATGATCTTGAAAATACAAGTTGTGAGAATTGTGAAGAAACGTATGCTGACGCACTAGACGATATATTGTTGCCTGTTTTATCTTCATGGACTAGTTGCTTAAAAATTGTCGATCCAAATATGAAAGAATTCGAACAACGCCGCTCACCGGGTACTTCTAATTCTTGTTATCATCCAAATGAAGTAATTCAGATGGAATTTGATTTTTGCATTTTAAACTGAGGTTATGTCAGCTAGGAAAGTATGTTAGATATAACATTTGTATCAAACAATCTGTTCCCAATTATTCGCATCTTTCCTTCTTATTGTTCGTTCCGCTTTTTTGTTATTTTGTTTAATTGATCCCTCAATTAGGTGACCTCGAGTTAGTAGCATATTTTTCGACCAGAATTTATTTGCTACTCTTTTAAGCCAGTGTTTCCTATTTTCTCTGTTTATTTACGAAGTCATTTACATGTTGACCTCCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTTCTTATTTTTGTTGTTAACTAATTTCGATTTGAATTTCCATGAAATAGTT]

[+] EMBL CD083140             [CGGGCCAANAATTCGGCACGAGGACTATCATCAGGTCATGTTTAAATTTCTCTTCGATAAGCAGATCATTAAGCAGAATAGCATTCTAATGTATTTTAAGTAATATTTCTCTAAGTGCTGAATTTAATCTTCAGACTAATTCTGCCAGCATATGGGACTTGGAACCTATTACTACATTCCTAGTGCCAGTACATTACCAACTATGGCACTGGATACATCTAAATGAAAGTATTATTCCAAGCAGCGAAAGTCGATTAAGTTCTTTACCGACTACCAAATCAAGTGATCCACC TTTTTTACGATTGGCATGGATTCGATTTCATGTGTTAAACGTTGATCAAGTCGAATTTATTAGTACATCCTCAAGTAAAGCAGTGACTTTTGGACATTTTTCCAATGAAGTAGCTGAATGTGTAATCAAAGCGCTTCGACCTTACCTTGGTCATCTTCTAAACAATAATCGTACACAAATCACACTGCGCATTCTGTTACAACCACCAGATCAGGTTGGCTATCGGATGGGTGCTTCGTGTCAGGAAGTATACACACTTCACAATCAACTAGATTCATCGAATGATCTTGAAAATACAAGTTGTGAGAATTGTGAAGAAACGTATGCTGACGCACTAGACGATATATTGTTGCCTGTTTTATCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD083093             [                                                                                                                                                                  AACCTATTACT CATTCCTAGTGCCAGTACATTACCAACTATGGCACTGGATACATCTAAATGAAAGTATTATTCCAAGCAGCGAAAGTCGATTAAGTTCTTTACCGACTACCAAATCAAGTGATCCACCTTTTTTTACGATTGGCATGGATTCGATTTCATGTGTTAAACGTTGATCAAGTCGAATTTATTAGTACATCCTCAAGTAAAGCAGTGACTTTTGGACATTTTTCCAATGAAGTAGCTGAATGTGTAATCAAAGCGCTTCGACCTTACCTTGGTCATCTTCTAAACAATAATCGTACACAAATCACACTGCGCATTCTGTTACAACCACCAGATCAGGTTGGCTATCGGATGGGTGCTTCGTGTCAGGAAGTATACACACTTCACAATCAACTAGATTCATCGAATGATCTTGAAAATACAAGTTGTGAGAATTGTGAAGAAACGTATGCTGACGCACTAGACGATATATTGTTGCCTGTTTTATCTTCATGGACTAGTTGCTTAAAAATTGTCGATCCAAATATGAAAGAATTCGAACAACGCCGCTCACCGGGTACTTCTAATTCTT                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AW017169             [                                                                                                                                                                                                                                           TCCAAGCAGCGAAAGTCGATTAAGTTCTTTACCGACTACCAAATCAAGTGATCCACC TTTTTTACGATTGGCATGGATTCGATTTCATGTGTTAAACGTTGATCAAGTCGAATTTATTAGTACATCCTCAAGTAAAGCAGTGACTTTTGGACATTTTTCCAATGAAGTAGCTGAATGTGTAATCAAAGCGCTTCGACCTTACCTTGGTCATCTTCTAAACAATAATCGTACACAAATCACACTGCGCATTCTGTTACAACCACCAGATCAGGTTGGCTATCGGATGGGTGCTTCGTGTCAGGAAGTATACACACTTCACAATCAACTAGATTCATCGAATGATCTTGAAAATACAAGTTGTGAGAATTGTGAAGAAACGTATGCTGACGCACTAGACGATATATTGTTGCCTGTTTTATCTTCATGGACTAGTTGCTTAAAAATTGTCGATCCAAATATGAAAGAATTCGAACAACGCCGCTCACCGGGTACTTCTAATTCTTGGTATCATCCAAATGAAGTAATTCAGATGGAATTTGATTNTTGCATTTTAAACTGAGGTTATGTCAGCTAGGAAAGTATGTTAGATATAACATTTGTATCAAACAATCTGTTCCCAATTATTCGC                                                                                                                                                                                                                                                                         ]
[-] EMBL CD076667             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACTAGATTCATCGAATGATCTTGAAAATACAAGTTGTGAGAATTGTGAAGAAACGTATGCTGACGCACTAGACGATATATTGTTGCCTGTTTTATCTTCATGGACTAGTTGCTTAAAAATTGTCGATCCAAATATGAAAGAATTCGAACAACGCCGCTCACCGGGTACTTCTAATTCTTGTTATCATCCAAATGAAGTAATTCAGATGGAATTTGATTTTTGCATTTTAAACTGAGGTTATGTCAGCTAGGAAAGTATGTTAGATATAACATTTGTATCAAACAATCTGTTCCCAATTATTCGCATCTTTCCTTCTTATTGTTCGTTCCGCTTTTTTGTTATTTTGTTTAATTGATCCCTCAATTAGGTGACCTCGAGTTAGTAGCATATTTTTCGACCAGAATTTATTTGCTACTCTTTTAAGCCAGTGTTTCCTATTTTCTCTGTTTATTTACGAAGTCATTTACATGTTGACCTCCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTTCTTATTTTTGTTGTTAACTAATTTCGATTTGAATTTCCATGAAATAGTT]
[-] EMBL CD076712             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TACAAGTTGTGAGAATTGTGAAGAAACGTATGCTGACGCACTAGACGATATATTGTTGCCTGTTTTATCTTCATGGACTAGTTGCTTAAAAATTGTCGATCCAAATATGAAAGAATTCGAACAACGCCGCTCACCGGGTACTTCTAATTCTTGTTATCATCCAAATGAAGTAATTCAGATGGAATTTGATTTTTGCATTTTAAACTGAGGTTATGTCAGCTAGGAAAGTATGTTAGATATAACATTTGTATCAAACAATCTGTTCCCAATTATTCGCATCTTTCCTTCTTATTGTTCGTTCCGCTTTTTTGTTATTTTGTTTAATTGATCCCTCAATTAGGTGACCTCGAGTTAGTAGCATATTTTTCGACCAGAATTTATTTGCTACTCTTTTAAGCCAGTGTTTCCTATTTTCTCTGTTTATTTACGAAGTCATTTACATGTTGACCTCCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTTCTTATTTTTGTTGTTAACTAATTTCGATTTGAATTTCCATGAAATAGTT]




>consensus_7957#0
CGGGCCAANAATTCGGCACGAGGACTATCATCAGGTCATGTTTAAATTTCTCTTCGATAA
GCAGATCATTAAGCAGAATAGCATTCTAATGTATTTTAAGTAATATTTCTCTAAGTGCTG
AATTTAATCTTCAGACTAATTCTGCCAGCATATGGGACTTGGAACCTATTACTACATTCC
TAGTGCCAGTACATTACCAACTATGGCACTGGATACATCTAAATGAAAGTATTATTCCAA
GCAGCGAAAGTCGATTAAGTTCTTTACCGACTACCAAATCAAGTGATCCACCTTTTTTAC
GATTGGCATGGATTCGATTTCATGTGTTAAACGTTGATCAAGTCGAATTTATTAGTACAT
CCTCAAGTAAAGCAGTGACTTTTGGACATTTTTCCAATGAAGTAGCTGAATGTGTAATCA
AAGCGCTTCGACCTTACCTTGGTCATCTTCTAAACAATAATCGTACACAAATCACACTGC
GCATTCTGTTACAACCACCAGATCAGGTTGGCTATCGGATGGGTGCTTCGTGTCAGGAAG
TATACACACTTCACAATCAACTAGATTCATCGAATGATCTTGAAAATACAAGTTGTGAGA
ATTGTGAAGAAACGTATGCTGACGCACTAGACGATATATTGTTGCCTGTTTTATCTTCAT
GGACTAGTTGCTTAAAAATTGTCGATCCAAATATGAAAGAATTCGAACAACGCCGCTCAC
CGGGTACTTCTAATTCTTGTTATCATCCAAATGAAGTAATTCAGATGGAATTTGATTTTT
GCATTTTAAACTGAGGTTATGTCAGCTAGGAAAGTATGTTAGATATAACATTTGTATCAA
ACAATCTGTTCCCAATTATTCGCATCTTTCCTTCTTATTGTTCGTTCCGCTTTTTTGTTA
TTTTGTTTAATTGATCCCTCAATTAGGTGACCTCGAGTTAGTAGCATATTTTTCGACCAG
AATTTATTTGCTACTCTTTTAAGCCAGTGTTTCCTATTTTCTCTGTTTATTTACGAAGTC
ATTTACATGTTGACCTCCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTTC
TTATTTTTGTTGTTAACTAATTTCGATTTGAATTTCCATGAAATAGTT

consensusID : consensus_7957#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence

                              [ACGGGTACTCAAATCTTGGTACCACCCAAATGAAGTAATCCAGAGGAATTTAATTTTGCATTTAAACTAAGGTTATGCCACTAGGAAAGTATGTAAAAATAACATTGTATCAAAAAATCTGTCCBAATTATCGCACTCCCTTCTAATTGTCCGTCCCGCTTTTTTGTAATTTGTTAATTGACCCCTCAATAGGTGGCCCCGAGTTAGTAACATATTTACGACAAGAATTAATTTGCTACTCTTCTAACCAAGTGTTCCCTATTTCTCTGTTTATTTTCAAAGGAATTTACCTGTTGACCRCCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTCCTTATTTTTGTTGTTAACTAATTTCGATTTGAATTTCCATGAAATAGTT]

[-] EMBL SMAA28904            [ACGGGTACTCAAATCTTGGTACCACCCAAATGAAGTAATCCAGAGGAATTTAATTTTGCATTTAAACTAAGGTTATGCCACTAGGAAAGTATGTAAAAATAACATTGTATCAAAAAATCTGTCCBAATTATCGCACTCCCTTCTAATTGTCCGTCCCGCTTTTTTGTAATTTGTTAATTGACCCCTCAATAGGTGGCCCCGAGTTAGTAACATATTTACGACAAGAATTAATTTGCTACTCTTCTAACCAAGTGTTCCCTATTTCTCTGTTTATTTTCAAAGGAATTTACCTGTTGACCRCCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTCCTTATTTTTGTTGTTAACTAATTTCGATTTGAATTTCCATGAAATAGTT]




>consensus_7957#1
ACGGGTACTCAAATCTTGGTACCACCCAAATGAAGTAATCCAGAGGAATTTAATTTTGCA
TTTAAACTAAGGTTATGCCACTAGGAAAGTATGTAAAAATAACATTGTATCAAAAAATCT
GTCCBAATTATCGCACTCCCTTCTAATTGTCCGTCCCGCTTTTTTGTAATTTGTTAATTG
ACCCCTCAATAGGTGGCCCCGAGTTAGTAACATATTTACGACAAGAATTAATTTGCTACT
CTTCTAACCAAGTGTTCCCTATTTCTCTGTTTATTTTCAAAGGAATTTACCTGTTGACCR
CCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTCCTTATTTTTGTTGTTAA
CTAATTTCGATTTGAATTTCCATGAAATAGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7957#0      CGGGCCAANAATTCGGCACGAGGACTATCATCAGGTCATGTTTAAATTTCTCTTCGATAA 60
consensus_7957#1      ------------------------------------------------------------
                                                                                  

consensus_7957#0      GCAGATCATTAAGCAGAATAGCATTCTAATGTATTTTAAGTAATATTTCTCTAAGTGCTG 120
consensus_7957#1      ------------------------------------------------------------
                                                                                  

consensus_7957#0      AATTTAATCTTCAGACTAATTCTGCCAGCATATGGGACTTGGAACCTATTACTACATTCC 180
consensus_7957#1      ------------------------------------------------------------
                                                                                  

consensus_7957#0      TAGTGCCAGTACATTACCAACTATGGCACTGGATACATCTAAATGAAAGTATTATTCCAA 240
consensus_7957#1      ------------------------------------------------------------
                                                                                  

consensus_7957#0      GCAGCGAAAGTCGATTAAGTTCTTTACCGACTACCAAATCAAGTGATCCACCTTTTTTAC 300
consensus_7957#1      ------------------------------------------------------------
                                                                                  

consensus_7957#0      GATTGGCATGGATTCGATTTCATGTGTTAAACGTTGATCAAGTCGAATTTATTAGTACAT 360
consensus_7957#1      ------------------------------------------------------------
                                                                                  

consensus_7957#0      CCTCAAGTAAAGCAGTGACTTTTGGACATTTTTCCAATGAAGTAGCTGAATGTGTAATCA 420
consensus_7957#1      ------------------------------------------------------------
                                                                                  

consensus_7957#0      AAGCGCTTCGACCTTACCTTGGTCATCTTCTAAACAATAATCGTACACAAATCACACTGC 480
consensus_7957#1      ------------------------------------------------------------
                                                                                  

consensus_7957#0      GCATTCTGTTACAACCACCAGATCAGGTTGGCTATCGGATGGGTGCTTCGTGTCAGGAAG 540
consensus_7957#1      ------------------------------------------------------------
                                                                                  

consensus_7957#0      TATACACACTTCACAATCAACTAGATTCATCGAATGATCTTGAAAATACAAGTTGTGAGA 600
consensus_7957#1      ------------------------------------------------------------
                                                                                  

consensus_7957#0      ATTGTGAAGAAACGTATGCTGACGCACTAGACGATATATTGTTGCCTGTTTTATCTTCAT 660
consensus_7957#1      ------------------------------------------------------------
                                                                                  

consensus_7957#0      GGACTAGTTGCTTAAAAATTGTCGATCCAAATATGAAAGAATTCGAACAACGCCGCTCAC 720
consensus_7957#1      -----------------------------------------------------------A 1
                                                                                  

consensus_7957#0      CGGGTACTTCTAATTCTTGTTATCATCCAAATGAAGTAATTCAGATGGAATTTGATTTTT 780
consensus_7957#1      CGGGTACTC--AAATCTTGGTACCACCCAAATGAAGTAATCCAGA-GGAATTTAATTTT- 57
                      ********   ** ***** ** ** ************** **** ******* ***** 

consensus_7957#0      GCATTTTAAACTGAGGTTATGTCAGCTAGGAAAGTATGTTAGATATAACATTTGTATCAA 840
consensus_7957#1      GCATTT-AAACTAAGGTTATGCCA-CTAGGAAAGTATGTAAAA-ATAACATT-GTATCAA 113
                      ****** ***** ******** ** ************** * * ******** *******

consensus_7957#0      ACAATCTGTTCCCAATTATTCGCATCTTTCCTTCTTATTGTTCGTTCCGCTTTTTTGTTA 900
consensus_7957#1      AAAATCTGT-CCBAATTAT-CGCAC--TCCCTTCTAATTGTCCGTCCCGCTTTTTTGTAA 169
                      * ******* ** ****** ****   * ****** ***** *** ************ *

consensus_7957#0      TTTTGTTTAATTGATCCCTCAATTAGGTGACCTCGAGTTAGTAGCATATTTTTCGACCAG 960
consensus_7957#1      TTTG--TTAATTGACCCCTCAAT-AGGTGGCCCCGAGTTAGTAACATATTTA-CGACAAG 225
                      ***   ******** ******** ***** ** ********** *******  **** **

consensus_7957#0      AATTTATTTGCTACTCTTTTAAGCCAGTGTTTCCTATTTTCTCTGTTTATTTACGAAGTC 1020
consensus_7957#1      AATTAATTTGCTACTCTTCTAACCAAGTGTTCCCTATTT-CTCTGTTTATTTTCAAAGGA 284
                      **** ************* *** * ****** ******* ************ * ***  

consensus_7957#0      ATTTACATGTTGACCTCCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTTC 1080
consensus_7957#1      ATTTACCTGTTGACCRCCATTCATTTATTGTGAAAACTTGTATCTGTGACTCATAGTTCC 344
                      ****** ******** ****************************************** *

consensus_7957#0      TTATTTTTGTTGTTAACTAATTTCGATTTGAATTTCCATGAAATAGTT 1128
consensus_7957#1      TTATTTTTGTTGTTAACTAATTTCGATTTGAATTTCCATGAAATAGTT 392
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