cluster # 7960

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Schistosoma mansoni
cluster # 7960 cluster # 7960 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7960#0 length = 703 sequences # 3

consensus_7960#1 length = 697 sequences # 3

consensusID : consensus_7960#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 703
fasta sequence

                              [CTCGGTACCCTGGCATGGTGGAATCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAAATCACGTTTATGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAGGTCATCGTATAGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTAGTCAGCAACCACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCCACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTTATACAACTGGTGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTATGACTAATCTACGTACAATTGCTGTATTACCTACTACAACGGATATTAATGCTGAAGCGTTCACTTTGGAATTACAACATTCTATGAGTTCGATGGGATCATCTGTTCGTCTTACTTCAGATATCGTACTGAAACGTTTAGGTTCATGCGCATTCGATAGTGTTAATCAGTATAGACTTAGTACTTGGTTAAGTCATCAAGAAGACTCACATCGTATTGTTTT]

[+] EMBL CD129300             [CTCGGTACCCTGGCATGGTGGAATCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAAATCACGTTTATGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAGGTCATCGTATAGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTAGTCAGCAACCACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAATTT                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD131770             [                                                                                                                                                                                               CGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCCACTTCTACATATGACCAGTACAAATT                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD171040             [                                                                                                                                                                                                                    ATCAGAGATTCAGAATTGGCTCAAATCCCGTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCCACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTTATACAACTGGTGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTATGACTAATCTACGTACAATTGCTGTATTACCTACTACAACGGATATTAATGCTGAAGCGTTCACTTTGGAATTACAACATTCTATGAGTTCGATGGGATCATCTGTTCGTCTTACTTCAGATATCGTACTGAAACGTTTAGGTTCATGCGCATTCGATAGTGTTAATCAGTATAGACTTAGTACTTGGTTAAGTCATCAAGAAGACTCACATCGTATTGTTTT]




>consensus_7960#0
CTCGGTACCCTGGCATGGTGGAATCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAA
ATCACGTTTATGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAG
GTCATCGTATAGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTA
GTCAGCAACCACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCC
CCTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTC
AATTATTATCGGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAAT
TGGGTATGCCACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTT
ATACAACTGGTGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTA
TGACTAATCTACGTACAATTGCTGTATTACCTACTACAACGGATATTAATGCTGAAGCGT
TCACTTTGGAATTACAACATTCTATGAGTTCGATGGGATCATCTGTTCGTCTTACTTCAG
ATATCGTACTGAAACGTTTAGGTTCATGCGCATTCGATAGTGTTAATCAGTATAGACTTA
GTACTTGGTTAAGTCATCAAGAAGACTCACATCGTATTGTTTT

consensusID : consensus_7960#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 697
fasta sequence

                              [AACCGGAGAACCAAATATTTATGGCATACAAGCTACTACAAAAGCTATTGAAGCTGTTTTATCCCGTGAGACATTTTACTCTGTAGATCGTCAGTATCCTAAGGCTTTGTTCAGTGTTACTCATATTATTTCTTCTCATTTATCACCGTTATTTCATCAACTTGATTTTGCTATGGAATGGTTGTCTGTTAAGTCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAAATCACGTTTATGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAGGTCATCGTATAGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTAGTCAGCAACCACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCCACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTTATACAACTGGTGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTATGACTAATCTACGTACAATTGCTGTATTACCTACCTATTGACATNCN]

[+] EMBL CD188608             [AACCGGAGAACCAAATATTTATGGCATACAAGCTACTACAAAAGCTATTGAAGCTGTTTTATCCCGTGAGACATTTTACTCTGTAGATCGTCAGTATCCTAAGGCTTTGTTCAGTGTTACTCATATTATTTCTTCTCATTTATCACCGTTATTTCATCAACTTGATTTTGCTATGGAATGGTTGTCTGTTAAGTCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAAATCACGTTTATGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAGGTCATCGTATAGTCAGTGAATTGCGGCGTGGTGATCTCGTTGGTTCTCTTGAAGTCATTAGTCAGCAACCATGAATATCTACAGTTATGGCGATCAGAGATCCAGAATTGGCTCANATCCCCTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAAGTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAA ATCACAACTAGTTCTAGTACGGCCAGCCCATTGGGTATGCCACTT                                                                                                                                                         ]
[+] EMBL CD127914             [                                                                                                                                        tagtaggtACCGTTATTTCATTATCTTGATTTTGCTATGGAATGGTTCTCTGTTAAGTCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAAATCACGTTTATGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAGGTCATCGTATAGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTAGTCAGCAACCACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCCACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTTATACAACTGGTGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTATGACTAATCTACGTACAA                             ]
[-] EMBL CD127997             [                                                                                                                                                                                                                                                                                                        GTATAGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTAGTCAGCAACCACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCCACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTTATACAACTGGTGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTATGACTAATCTACGTACAATTGCTGTATTACCTACCTATTGACATNCN]




>consensus_7960#1
AACCGGAGAACCAAATATTTATGGCATACAAGCTACTACAAAAGCTATTGAAGCTGTTTT
ATCCCGTGAGACATTTTACTCTGTAGATCGTCAGTATCCTAAGGCTTTGTTCAGTGTTAC
TCATATTATTTCTTCTCATTTATCACCGTTATTTCATCAACTTGATTTTGCTATGGAATG
GTTGTCTGTTAAGTCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAAATCACGTTTA
TGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAGGTCATCGTAT
AGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTAGTCAGCAACC
ACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTT
ACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATC
GGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCC
ACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTTATACAACTGG
TGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTATGACTAATCT
ACGTACAATTGCTGTATTACCTACCTATTGACATNCN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7960#0      ------------------------------------------------------------
consensus_7960#1      AACCGGAGAACCAAATATTTATGGCATACAAGCTACTACAAAAGCTATTGAAGCTGTTTT 60
                                                                                  

consensus_7960#0      ------------------------------------------------------------
consensus_7960#1      ATCCCGTGAGACATTTTACTCTGTAGATCGTCAGTATCCTAAGGCTTTGTTCAGTGTTAC 120
                                                                                  

consensus_7960#0      ----------------------------------------CTCGGT---ACCCTGGCATG 17
consensus_7960#1      TCATATTATTTCTTCTCATTTATCACCGTTATTTCATCAACTTGATTTTGCTATGGAATG 180
                                                              ** * *    *  *** ***

consensus_7960#0      GTGG-------AATCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAAATCACGTTTA 70
consensus_7960#1      GTTGTCTGTTAAGTCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAAATCACGTTTA 240
                      ** *       * ***********************************************

consensus_7960#0      TGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAGGTCATCGTAT 130
consensus_7960#1      TGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAGGTCATCGTAT 300
                      ************************************************************

consensus_7960#0      AGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTAGTCAGCAACC 190
consensus_7960#1      AGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTAGTCAGCAACC 360
                      ************************************************************

consensus_7960#0      ACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTT 250
consensus_7960#1      ACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTT 420
                      ************************************************************

consensus_7960#0      ACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATC 310
consensus_7960#1      ACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATC 480
                      ************************************************************

consensus_7960#0      GGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCC 370
consensus_7960#1      GGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCC 540
                      ************************************************************

consensus_7960#0      ACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTTATACAACTGG 430
consensus_7960#1      ACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTTATACAACTGG 600
                      ************************************************************

consensus_7960#0      TGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTATGACTAATCT 490
consensus_7960#1      TGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTATGACTAATCT 660
                      ************************************************************

consensus_7960#0      ACGTACAATTGCTGTATTACCTACTACAACGGATATTAATGCTGAAGCGTTCACTTTGGA 550
consensus_7960#1      ACGTACAATTGCTGTATTACCTAC--CTATTGACATNCN--------------------- 697
                      ************************  * *  ** **                        

consensus_7960#0      ATTACAACATTCTATGAGTTCGATGGGATCATCTGTTCGTCTTACTTCAGATATCGTACT 610
consensus_7960#1      ------------------------------------------------------------
                                                                                  

consensus_7960#0      GAAACGTTTAGGTTCATGCGCATTCGATAGTGTTAATCAGTATAGACTTAGTACTTGGTT 670
consensus_7960#1      ------------------------------------------------------------
                                                                                  

consensus_7960#0      AAGTCATCAAGAAGACTCACATCGTATTGTTTT 703
consensus_7960#1      ---------------------------------