cluster # 7962

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Schistosoma mansoni
cluster # 7962 cluster # 7962 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7962#0 length = 530 sequences # 2

consensus_7962#1 length = 512 sequences # 4

consensusID : consensus_7962#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 530
fasta sequence

                              [AGGCCAAAATGCTTCAAGACTCTGAAATACTGCCATTGTAACTCCACCTTTATCCTTATTTATCATTGGATTCCAATCACCATGTCGAATATGTTTTTCTATTGCTAATCTGTACTCTCGAAACATAGAATCTAGCTCAGGAAGGCGAAATAGTGCTGCACCCTTAACC-AATATTCGAAATAAGAATCGACTCCTGAACCAATAGGGGCATCGCGGAGCTGTCCAACTTCCAGTGGATAACATCAATATGGTTTCCCAGTAATCCAAGAGAAGATCTGGTATTTCCACATAGCTTTAAGAGCACGCGTCGCAACAGCCTCGTATCTAGGATCTCCTGTCAGACGAGATAATGCTCCAAACTCCAAAATAAATGTACCAATACCAGCAACACACGTGATTGAAGTCTCTCCTTTAAGAACGCCACCCAGTTTGAAGTTGACAGTACCGTATGGCATCCCGGTCGGGGTGTTGAAAGCAGGTAGTAGCTTGGAAGCAAACACTTCTGCTTGCCTGAGTAGCGGTCCAGAACA]

[+] EMBL CD072393             [AGGCCAAAATGCTTCAAGACTCTGAAATACTGCCATTGTAACTCCACCTTTATCCTTATTTATCATTGGATTCCAATCACCATGTCGAATATGTTTTTCTATTGCTAATCTGTACTCTCGAAACATAGAATCTAGCTCAGGAAGGCGAAATAGTGCTGCACCCTTAACC AATATTCGAAATAAGAATCGACTCCTGAACCAATAGGGGCATCGCGGAGCTGTCCAACTTCCAGTGGATAACATCAATATGGTTTCCCAGTAATCCAAGAGAAGATCTGGTATTTCCACATAGCTTTAA                                                                                                                                                                                                                                        ]
[+] EMBL CD155939             [                                                        TATTTATCATTGGATTCCAATCACCATGTCGAATATGTTTTTCTATTGCTAATCTGTACTCTCGAAACATAGAATCTAGCTCAGGAAGGCGAAATAGTGCTGCACCCTTAACCAAATATTCGAAATAAGAATCGACTCCTGAACCAATAGTGGCATCGC GAGCTGTCCAACTTCCAGT GATAACATCAATATGGTTTCCCAGTAATCCAAGAGAAGATCT GTATTTCCACATAGCTTTTAGAGCACGCGTCGCAACAGCCTCGTATCTAGGATCTCCTGTCAGACGAGATAATGCTCCAAACTCCAAAATAAATGTACCAATACCAGCAACACACGTGATTGAAGTCTCTCCTTTAAGAACGCCACCCAGTTTGAAGTTGACAGTACCGTATGGCATCCCGGTCGGGGTGTTGAAAGCAGGTAGTAGCTTGGAAGCAAACACTTCTGCTTGCCTGAGTAGCGGTCCAGAACA]




>consensus_7962#0
AGGCCAAAATGCTTCAAGACTCTGAAATACTGCCATTGTAACTCCACCTTTATCCTTATT
TATCATTGGATTCCAATCACCATGTCGAATATGTTTTTCTATTGCTAATCTGTACTCTCG
AAACATAGAATCTAGCTCAGGAAGGCGAAATAGTGCTGCACCCTTAACCAATATTCGAAA
TAAGAATCGACTCCTGAACCAATAGGGGCATCGCGGAGCTGTCCAACTTCCAGTGGATAA
CATCAATATGGTTTCCCAGTAATCCAAGAGAAGATCTGGTATTTCCACATAGCTTTAAGA
GCACGCGTCGCAACAGCCTCGTATCTAGGATCTCCTGTCAGACGAGATAATGCTCCAAAC
TCCAAAATAAATGTACCAATACCAGCAACACACGTGATTGAAGTCTCTCCTTTAAGAACG
CCACCCAGTTTGAAGTTGACAGTACCGTATGGCATCCCGGTCGGGGTGTTGAAAGCAGGT
AGTAGCTTGGAAGCAAACACTTCTGCTTGCCTGAGTAGCGGTCCAGAACA

consensusID : consensus_7962#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 512
fasta sequence

                              [GATAAAAGCCTACTACATCGATAAAATGGATGTACAAATGTAGTCTAGTAATTTAGGAACTTGGATTTAAAACATACAGTTGCCAGATAGCATCCAAGTATTCGCATCAGGCATTATATGTAAACATACGCAGTATTCATGAACGAACATTGAGAGTTAAACATGAGTATGCAAATATATATGGGAAAATGTTAGAGAAGCAGAAAAGAACAAAAATGGTTCTCATTTACTGAAAGCCAACATCAGTTAAACACTACCTGTCAGACGAGATAATGCTCCAAACTCCAAAATAAATGTACCAATACCAGCAACACACGTGATTGAAGTCTCTCCTTTAAGAACGCCACCCAGTTTGAAGTTGACAGTACCGTATGGCATCCCGGTCGGGGTGTTGAAAGCAGGTAGTAGCTTGGAAGCAAACACTTCTGCTTGCCTGAGTAGCGGTCCAGAACAAGGCCAGGATGGTTCTACTTCAAAACCGGCTCTGTGTGACAAAAGATGGGCTGAGATGA]

[+] EMBL CD092141             [GATAAAAGCCTACTACATCGATAAAATGGATGTACAAATGTAGTCTAGTAATTTAGGAACTTGGATTTAAAACATACAGTTGCCAGATAGCATCCAAGTATTCGCATCAGGCATTATATGTAAACATACGCAGTATTCATGAACGAACATCGAGAGTTAAACATGAGTATGCAAATATATATGGGAAAATGTTAGAGAAGCAGAAAAGAACAAAAATGGTTCTCATTTACTGAAAGCCAACATCAGTTAAACACTACCTGTCAGACGAGATAATGCTCCAAACTCCAAAATAAATGTACCAATACCAGCAACACACGTGATTGAAGTCTCTCCTTTAAGAACGCCACCCAGTTTGAAGTTGACAGTACCGTATGGCATCCCGGTCGGGGTGTTGAAAGCAGGTAGTAGCTTGGAAGCAAACACTTCTGCTTGCCTGAGTAGCGGTCCAGAACAAGGCCAGGATGGTTCTACCTCAAAACCGGCTCTGTGTGACAAAAGATGGGCTGAGATG ]
[+] EMBL CD092174             [GATAAAAGCCTACTACATCGATAAAATGGATGTACAAATGTAGTCTAGTAATTTAGGAACTTGGATTTAAAACATACAGTTGCCAGATAGCATCCAAGTATTCGCATCAGGCATTATATGTAAACATACGCAGTATTCATGAACGAACATTGAGAGTTAAACATGAGTATGCAAATATATATGGGAAAAAGTTAGAGAAGCAGAAAAGAACAAAAATGGTTCTCATTTACTGAAAGCCAACATCAGTTAAACACTACCTGTCAGACGAGATAATGCTCCAAACTCCAAAATAAATGTACCAATACCAGCAACACACGTGATTGAAGTCTCTCCTTTAAGAACGCCACCCAGTTTGAAGTTGACAGTACCGTATGGCATCCCGGTCGGGGTGTTGAAAGCAGGTAGTAGCTTGGAAGCAAACACTTCTGCTTGCCTGAGTAGCGGTCCAGAACAAGGCCAGGATGGTTCTACTTCAAAACCGGCTCTGTGTGACAAAAGATGGGCTGAGATG ]
[+] EMBL CD092249             [GATAAAAGCCTACTACATCGATAAAATGGATGTACAAATGTAGTCTAGTAATTTAGGAACTTGGATTTAAAACATACAGTTGCCAGATAGCATCCAAGTATTCGCATCAGGCATTATATGTAAACATACGCAGTATTCTTGAGCGAACATTGAGAGTTAAACATGAGTATGCAAATATATATGGGAAAATGTTAGAGAAGCAGAAAAGAACAAAAATGGTTCTCATTTACTGAAAGCCAACATCAGTTAAACACTACCTGTCAGACGAGATAATGGTTCAAACTCCAAAATAAATGTACCAATACCAGCAACACACGTGATTGAAGTCTCTCCTTTAAGAACGCCACCCAGTTTGAAGTTGACAGTACCGTATGGCATCCCGGTCGGGGTGTTGAAAGCAGGTAGTAGCTTGGAAGCAAACACTTCT                                                                                     ]
[-] EMBL CD092247             [ ATAAAAGCCTACTACATCGATAAAATGGATGTACAAATGTAGTCTAGTAATTTAGGAACTTGGATTTAAAACATACAGTTGCCAGATAGCATCCAAGTATTCGCATCAGGCATTATATGTAAACATACGCAGTATTCATGAACGAACATTGAGAGTTAAACATGAGTATGCAAATATATATGGGAAAATGTTAGAGAAGCAGAAAAGAACAAAAATGGTTCTCATTTACTGAAAGCCAACATCAGTTAAACACTACCTGTCAGACGAGATAATGCTCCAAACTCCAAAATAAATGTACCAATACCAGCAACACACGTGATTGAAGTCTCTCCTTTAAGAACGCCACCCAGTTTGAAGTTGACAGTACCGTATGGCATCCCGGTCGGGGTGTTGAAAGCAGGTAGTAGCTTGGAAGCAAACACTTCCGCTTGCCTGAGTAGCGGTCCAGAACAAGGCCAGGATGGTTCTACTTCAAAACCGGCTCTGTGTGACAAAAGATGGGCTGAGATGA]




>consensus_7962#1
GATAAAAGCCTACTACATCGATAAAATGGATGTACAAATGTAGTCTAGTAATTTAGGAAC
TTGGATTTAAAACATACAGTTGCCAGATAGCATCCAAGTATTCGCATCAGGCATTATATG
TAAACATACGCAGTATTCATGAACGAACATTGAGAGTTAAACATGAGTATGCAAATATAT
ATGGGAAAATGTTAGAGAAGCAGAAAAGAACAAAAATGGTTCTCATTTACTGAAAGCCAA
CATCAGTTAAACACTACCTGTCAGACGAGATAATGCTCCAAACTCCAAAATAAATGTACC
AATACCAGCAACACACGTGATTGAAGTCTCTCCTTTAAGAACGCCACCCAGTTTGAAGTT
GACAGTACCGTATGGCATCCCGGTCGGGGTGTTGAAAGCAGGTAGTAGCTTGGAAGCAAA
CACTTCTGCTTGCCTGAGTAGCGGTCCAGAACAAGGCCAGGATGGTTCTACTTCAAAACC
GGCTCTGTGTGACAAAAGATGGGCTGAGATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7962#0      AGGCCAAAATGCTTCAAGACTCTGAAATACTGCCATTGTAACTCCACCTTTATCCTTATT 60
consensus_7962#1      ------------------------------------------------------------
                                                                                  

consensus_7962#0      TATCATTGGATTCCAATCACCATGTCGAATATGTTTTTCTATTGCTAATCTGTACTCTCG 120
consensus_7962#1      ----GATAAAAGCCTACTACATCGATAAAATGGATGTACAAATGTAGTCTAGTAATTTAG 56
                            *  *  ** *  **   *   **   * * * * * **       *** * * *

consensus_7962#0      AAACATAGAATCTAG-CTCAGGAAGGCGAAATAGTGCT---GCACCCTTAACCAATATTC 176
consensus_7962#1      GAACTTGGATTTAAAACATACAGTTGCCAGATAGCATCCAAGTATTCGCATCAGGCATTA 116
                       *** * ** *  *  *  *     ** * ****       * *  *  * *    *** 

consensus_7962#0      GAAATAAGAATCGACTCCTGAACCAATAG-GGGCATCGCGGAGCTGTCCAACTTCCAGTG 235
consensus_7962#1      TATGTAAACAT--ACGCAGTATTCATGAACGAACATTG-AGAGTTAAACATGAGTATGCA 173
                       *  ***  **  ** *   *  **  *  *  *** *  *** *   **       *  

consensus_7962#0      GATAACATCAATATGGTTTCCCAGTAATCCAAGAGAAGATCTGGTATTTCCACATAGCTT 295
consensus_7962#1      AATATATATGGGAAAATGTTAGAGAAGCAGAAAAGAACAAAAATGGTTCTCATTTA---C 230
                       ***        *   * *   ** *    ** **** *       **  **  **    

consensus_7962#0      TAAGAGCACGCGTCGCAACAGCCTCGTATCTAGGATCTCCTGTCAGACGAGATAATGCTC 355
consensus_7962#1      TGAAAGCCAACATCA------------GTTAAACACTACCTGTCAGACGAGATAATGCTC 278
                      * * ***   * **              *  *  *   **********************

consensus_7962#0      CAAACTCCAAAATAAATGTACCAATACCAGCAACACACGTGATTGAAGTCTCTCCTTTAA 415
consensus_7962#1      CAAACTCCAAAATAAATGTACCAATACCAGCAACACACGTGATTGAAGTCTCTCCTTTAA 338
                      ************************************************************

consensus_7962#0      GAACGCCACCCAGTTTGAAGTTGACAGTACCGTATGGCATCCCGGTCGGGGTGTTGAAAG 475
consensus_7962#1      GAACGCCACCCAGTTTGAAGTTGACAGTACCGTATGGCATCCCGGTCGGGGTGTTGAAAG 398
                      ************************************************************

consensus_7962#0      CAGGTAGTAGCTTGGAAGCAAACACTTCTGCTTGCCTGAGTAGCGGTCCAGAACA----- 530
consensus_7962#1      CAGGTAGTAGCTTGGAAGCAAACACTTCTGCTTGCCTGAGTAGCGGTCCAGAACAAGGCC 458
                      *******************************************************     

consensus_7962#0      ------------------------------------------------------
consensus_7962#1      AGGATGGTTCTACTTCAAAACCGGCTCTGTGTGACAAAAGATGGGCTGAGATGA 512