cluster # 8000

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8000 cluster # 8000 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8000#0 length = 790 sequences # 5

consensus_8000#1 length = 402 sequences # 1

consensusID : consensus_8000#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 790
fasta sequence

                              [TAGACTAGTAATCTCTTGTTGTGTATCTCTCACACCACGCTTTGATATTTCCCATGGAAGCTAATTTTTCCTAGCTGTATATACATTTGTGATTAGACTTGTTTCTTACCGCCTTTTTAGGGTGCTTGTCGAAGAGAATAAAAAGTTGAAGATTGATATTTCAAGTTTGCAGTTAAGCAATCGAAGTCTTGTCAATCAGAATAGGGATGAG-AAAAAAAAGGTTATGGATTGCCGTTTGCAGATTGCTGACTTAGAAGGGCGTCTTAAGGCGTTCGATGCCACAAAGCAGGAATTAGCCGATTCACAAGGACAATGTGAACGCGTACGTATGACATTAGAAAGTTGTGAAGCTAAATTAGCTGATGCTGAAAGGCGTGCAGATGAAGCATCCGGTTTAATAAAGATCAAGGATAGCATTATTGTAAAACAAAGTAATTTCACGAAGGAAATTGAAGAACGCTTGAGAAATATCACGGAGGAACGAGATAATTTGTTACATAAAACCTCTAATCTAGAGACGGAATTAAATATAGCTATTGTTAGAGGTGAAGATGCTGATGACTTANAAGAACGATTGAAGGCGCTACAGGAACTTTTTGATAATTTGGTCAATGATCGTTCTGAAACAACTAGTGAGAGTGGATTAGCTGCTGCTAACGAGTATTTCANATCCGAACAGGCTAAATCCGAAAATCGTATTGCGGAACTTAAAGAAGTTAAAGCGGATTGGAGCAGAAGATTGAAGAATTTGTTGTGATAAAAAGCGACTGCAAATGCAGTTGGAACAACC]

[-] EMBL CD166797             [TAGACTAGTAATCTCTTGTTGTGTATCTCTCACACCACGCTTTGATATTTCCCATGGAAGCTAATTTTTCCTAGCTGTATATACATTTGTGATTAGACTTGTTTCTTACCGCCTTTTTAGGGTGCTTGTCGAAGAGAATAAAAAGCTGAAGATTGATATTTCAAGTTTGCAGTTAAGCAATCGAAGTCTTGTCAATCAGAATAGGGATGAGAAAAAAAAAGGTTATGGATTGCCGTTTGCAGATTGCTGCCTTAGAAGGGCGTCTTAAGGCGTTCGATGCCACAAAGCAGGAATTAGCCGATTCACAAGGAC ATGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD121038             [                                                                                                                                         ATAAAAAGTTGAAGATTGATATTTCAAGTTTGCAGTTAAGCAATCGAAGTCTTGTCAATCAGAATAGGGATGAG AAAAAAAAGGTTATGGATTGCCGTTTGCAGATTGCTGACTTAGAAGGGCGTCTTAAGGCGTTCGATGCCACAAAGCAGGAATTAGCCGATTCACAAGGACAATGTGAACGCGTACGTATGACATTAGAAAGTTGTGAAGCTAAATTAGCTGATGCTGAAAGGCGTGCAGATGAAGCATCCGGTTTAATAAAGATCAAGGATAGCATTATTGTAAGACAAAGCAATTTCACGAAGGAAATTGAAGAACGCTTGAGAAATATCACGGAGGAACGAGATAATTTGTTACATAAAACCTCTAATCTAGAGACGGAATTAAATATAGCTATTGTTAGAGGTGAAGATGCTGATGACTTANAAGAACGATTGAAGGCGCTACAGGAACTTTTTGATAATTTGGTCAATGATCGTTCTGAAACAACTAGTGAGAGTGGATTAGCTGCTGCTAACGAGTATTTCANATCCGAACAGGCTAAATCCGAAAATCGTATTGCGGAACTTAAAGAAGTT                                                                        ]
[+] EMBL CD120990             [                                                                                                                                         ATAAAAAGTTGAAGATTGATATTTCAAGTTTGCAGTTAAGCAATCGAAGTCTTGTCAATCAGAATAGGGATGAG AAAAAAAAGGTTATGGATTGCCGTTTGCAGATTGCTGACTTAGAAGGGCGTCTTAAGGCGTTCGATGCCACAAAGCAGGGATTAGCCGATTCACAAGGACAATGTGAACGCGTACGTATGACACTAGAAAGTTGTGAAGCTAAATTAGCTGATGCTGAAAGGCGTGCAGATGAAGCATCCGGTTTAATAAAGATCAAGGATAGCATTATTGTAAAACAAAGTAATTTCACGAAGGAAATTGAAGAACGCTTGAGAAATATCACGGAGGAACGAGATAATTTGTTACATAAAACCTCTAATCTAGAGACGGAATTAAATATAGCTATTGTTAGAGGTGAAGATGCTGATGACTTANAAGAACGATTGAAGGCGCTACAGGAACTTTTTGATAATTTGGTCAATGATCGTTCTGAAACAACTAGTGAGAGTGGATTAGCTGCTGCTAACGAGTATTTCANATCCGAACAGGCTTAATCCGANNATCGTATTGC                                                                                        ]
[+] EMBL CD150027             [                                                                                                                                                                                 CAATCGAAGTCTTGTCAATCAGAATAGGGATGAG   AAAAAAGGTTATGGATTGCCGTTTGCAGATTGCTGACTTAGAAGGGCGTCTTAAGGCGTTCGATGCCACAAAGCAGGAATTAGCCGATTCACAAGGACAATGTGAACGCGTACGTATGACATTAGAAAGTTGTGAAGCTAAATTAGCTGATGCTGAAAGGCGTGCAGATGAAGCATCCGGTTTAATAAAGACCAAGGATAGCATTATTGTAAAACAAAGTAATTTCACGAAGGAAATTGAAGAGCGCTTGAGAAATATCACGGAGGAACGAGATAATTTGTTACATAAAACCTCTAATCTAGAGACGGAATT                                                                                                                                                                                                                                                                         ]
[+] EMBL CD136731             [                                                                                                                                                                                                                             GTTATGGATTGCCGTTTGCAGATTGCTGACTTAGAAGGGCGTCTTAAGGCGTTCGATGCCACAAAGCAGGAATTAGCCGATTCACAAGGACAATGTGAACGCGTACGTATGACATTAGAAAGTTGTGAAGCTAAATTAGCTGATGCTGAAAGGCGTGCAGATGAAGCATCCGGTTTAATAAAGATCAAGGATAGCATTATTGTAAAACAAAGTAATTTCACGAAGGAAATTGAAGAACGCTTGAGGAATATCACGGAGGAACGAGATAATTTGTTACATAAAACCTCTAATCTAGAGACGGAATTAAATATAGCTATTGTTAGAGGTGAAGATGCTGATGACTTAAAAGAACGATTGAAGGCGCTACAGGAACTTTTTGATAATTTGGTCAATGATCGTTCTGAAACAACTAGTGAGAGTGGATTAGCTGCTGCTAACGAGTATTTCAAATCCGAACAGGCTAAATCCG AAATCGTATTGCGGAACTTAAAGAAGTAAAAGCGGATTGGAGCAGAAGATTGAAGAATTTGTTGTGATAAAAAGCGACTGCAAATGCAGTTGGAACAACC]




>consensus_8000#0
TAGACTAGTAATCTCTTGTTGTGTATCTCTCACACCACGCTTTGATATTTCCCATGGAAG
CTAATTTTTCCTAGCTGTATATACATTTGTGATTAGACTTGTTTCTTACCGCCTTTTTAG
GGTGCTTGTCGAAGAGAATAAAAAGTTGAAGATTGATATTTCAAGTTTGCAGTTAAGCAA
TCGAAGTCTTGTCAATCAGAATAGGGATGAGAAAAAAAAGGTTATGGATTGCCGTTTGCA
GATTGCTGACTTAGAAGGGCGTCTTAAGGCGTTCGATGCCACAAAGCAGGAATTAGCCGA
TTCACAAGGACAATGTGAACGCGTACGTATGACATTAGAAAGTTGTGAAGCTAAATTAGC
TGATGCTGAAAGGCGTGCAGATGAAGCATCCGGTTTAATAAAGATCAAGGATAGCATTAT
TGTAAAACAAAGTAATTTCACGAAGGAAATTGAAGAACGCTTGAGAAATATCACGGAGGA
ACGAGATAATTTGTTACATAAAACCTCTAATCTAGAGACGGAATTAAATATAGCTATTGT
TAGAGGTGAAGATGCTGATGACTTANAAGAACGATTGAAGGCGCTACAGGAACTTTTTGA
TAATTTGGTCAATGATCGTTCTGAAACAACTAGTGAGAGTGGATTAGCTGCTGCTAACGA
GTATTTCANATCCGAACAGGCTAAATCCGAAAATCGTATTGCGGAACTTAAAGAAGTTAA
AGCGGATTGGAGCAGAAGATTGAAGAATTTGTTGTGATAAAAAGCGACTGCAAATGCAGT
TGGAACAACC

consensusID : consensus_8000#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 402
fasta sequence

                              [AAAAAAGACATCCAGCACACCAAGTAAAGCAGCAGAGGTGTCTGAGCCACAAAGCAGTACATCAGGCAAAGTGCTCATACTACATGGGCCTGATAACTTGAATAATTTGAAAGAATTCCTCTCCAAAATTAGCCCGGTGACCAGCATAAACAGGATCGAACCGGCACCCGTAATGGCTACCATCGCTAATATAAGCGTTTTCAAAAGTCGATTAAAGTCAGGAAAGTTGATGTTTCAAGGGAAGGAGCTCGAAGTAATACCTGTAGATAGAGTTGATGACGCCAATAAAGAAATGCAACCCACCAAGACCTTGTTCGTAGGTGGAATCCCAAAAACTTTGACAATCGAACAACTAAAAAGTCACCACCCTAACAACTGCCAACCGGTTTCCTTAAAATTGCT]

[+] EMBL CD148659             [AAAAAAGACATCCAGCACACCAAGTAAAGCAGCAGAGGTGTCTGAGCCACAAAGCAGTACATCAGGCAAAGTGCTCATACTACATGGGCCTGATAACTTGAATAATTTGAAAGAATTCCTCTCCAAAATTAGCCCGGTGACCAGCATAAACAGGATCGAACCGGCACCCGTAATGGCTACCATCGCTAATATAAGCGTTTTCAAAAGTCGATTAAAGTCAGGAAAGTTGATGTTTCAAGGGAAGGAGCTCGAAGTAATACCTGTAGATAGAGTTGATGACGCCAATAAAGAAATGCAACCCACCAAGACCTTGTTCGTAGGTGGAATCCCAAAAACTTTGACAATCGAACAACTAAAAAGTCACCACCCTAACAACTGCCAACCGGTTTCCTTAAAATTGCT]




>consensus_8000#1
AAAAAAGACATCCAGCACACCAAGTAAAGCAGCAGAGGTGTCTGAGCCACAAAGCAGTAC
ATCAGGCAAAGTGCTCATACTACATGGGCCTGATAACTTGAATAATTTGAAAGAATTCCT
CTCCAAAATTAGCCCGGTGACCAGCATAAACAGGATCGAACCGGCACCCGTAATGGCTAC
CATCGCTAATATAAGCGTTTTCAAAAGTCGATTAAAGTCAGGAAAGTTGATGTTTCAAGG
GAAGGAGCTCGAAGTAATACCTGTAGATAGAGTTGATGACGCCAATAAAGAAATGCAACC
CACCAAGACCTTGTTCGTAGGTGGAATCCCAAAAACTTTGACAATCGAACAACTAAAAAG
TCACCACCCTAACAACTGCCAACCGGTTTCCTTAAAATTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8000#0      TAGACTAGTAATCTCTTGTTGTGTATCTCTCACACCACGCTTTGATATTTCCCATGGAAG 60
consensus_8000#1      ------------------------------------------------------------
                                                                                  

consensus_8000#0      CTAATTTTTCCTAGCTGTATATACATTTGTGATTAGACTTGTTTCTTACCGCCTTTTTAG 120
consensus_8000#1      ------------------------------------------------------------
                                                                                  

consensus_8000#0      GGTGCTTGTCGAAGAGAATAAAAAGTTGAAGATTGATATTTCAAGTTTGCAGTTAAGCAA 180
consensus_8000#1      ------------------------------------------------------------
                                                                                  

consensus_8000#0      TCGAAGTCTTGTCAATCAGAATAGGGATGAGAAAAAAAAGGTTATGGATTGCCGTTTGCA 240
consensus_8000#1      --------------------------------------------------AAAAAAGACA 10
                                                                                **

consensus_8000#0      GATTGCTGACTTAGAAGGGCGTCTTAAGGCGTTCGATGCCACAAAGCAGGA-ATTAGCCG 299
consensus_8000#1      TCCAGCACACCAAGTAAAGCAGCA-GAGGTGTCTGA-GCCACAAAGCAGTACATCAGGCA 68
                          **  **  ** *  **  *   *** **  ** ************ * ** ** * 

consensus_8000#0      ATTCACAAGGACAATGTGAACGCG----TACGTATGACATTAGAAAGTTGTGAAGCTAAA 355
consensus_8000#1      AAGTGCTCATACTACATGGGCCTGATAACTTGAATAATTTGAAAGAATTCCTCTCCAAAA 128
                      *    *    ** *  **  *  *       * ** *  * * * * **      * ***

consensus_8000#0      TTAGCTGATGCTGAAAGGCGTGCAGATGAAGCATCCGGTT----TAATAAAGATCAAGGA 411
consensus_8000#1      TTAGCC--CGGTGACCAGCATAAACAGGATCGAACCGGCACCCGTAATGGCTACCATCGC 186
                      *****    * ***   ** *  * * **   * ****      ****    * **  * 

consensus_8000#0      TAGCATTATTGTAAAACAAAGTAATTTCACGA-AGGAAATTGAAGAACGCTTGAGAAATA 470
consensus_8000#1      TAATATAAGCGTTTTCAAAAGTCGATTAAAGTCAGGAAAGTTGATGTTTCAAGGGAAGGA 246
                      **  ** *  **     *****   ** * *  ****** *  *     *  * ***  *

consensus_8000#0      TCACGGAGGAACGAG-ATAATTTGTTACATAAAACCTCTAATCTAGAGACGGAATTAAAT 529
consensus_8000#1      GCTCGAAGTAATACCTGTAGATAG--AGTTGATGACGCCAATAAAGAAATGCAACCCACC 304
                       * ** ** **      **  * *  *  * *   * * ***  *** * * **   *  

consensus_8000#0      ATAGCTATTGTTAGAGGTGAAGATGCTGATGACTTANAAGAACGATTGAAGGCGCTACAG 589
consensus_8000#1      AAGACCTTGTTCGTAGGTGGA-ATCCCAAAAACTTTGACAATCGA---ACAACTAAAAAG 360
                      *   *  *  *   ***** * ** *  *  ****  *  * ***   *   *   * **

consensus_8000#0      GAACTTTTTGATAATTTGGTCAATGATCGTTCTGAAACAACTAGTGAGAGTGGATTAGCT 649
consensus_8000#1      TCACCACCCTAACAACTGCCAACCGGTTTCCTTAAAATTGCT------------------ 402
                        **      *  *  **   *  * *     * ***   **                  

consensus_8000#0      GCTGCTAACGAGTATTTCANATCCGAACAGGCTAAATCCGAAAATCGTATTGCGGAACTT 709
consensus_8000#1      ------------------------------------------------------------
                                                                                  

consensus_8000#0      AAAGAAGTTAAAGCGGATTGGAGCAGAAGATTGAAGAATTTGTTGTGATAAAAAGCGACT 769
consensus_8000#1      ------------------------------------------------------------
                                                                                  

consensus_8000#0      GCAAATGCAGTTGGAACAACC 790
consensus_8000#1      ---------------------