cluster # 8006

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Schistosoma mansoni
cluster # 8006 cluster # 8006 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8006#0 length = 712 sequences # 4

consensus_8006#1 length = 478 sequences # 1
consensus_8006#2 length = 161 sequences # 1

consensusID : consensus_8006#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 712
fasta sequence

                              [AAGATGATGATGAAGATATTTATGACCCTAAAAGCAAAGGATTCTGTCGTGCATGTGTCGACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGTGTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAGCATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAACATTTGCACAGTTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTGTTCATCCACCAAAATTGGATAGTCGTAATGCATTAAGTGGATGGTTATGTATGCAACATAATTTAGTGAATAAAAAAATTGGTAAACCATTATTTGATTGTACTTATGTATTAGAAAGATGGCGATATGGTTGGAAAGATAAAGATGATTGTAAACTACCAGAACAAGATTAGTATTGTCTTTTAATGAATATGTATAATGTGTGTGTGTGTGTGTTTAGTGATTATTCAG--TTTCTTTCCG--TTCTA-TCTG--TTTTCTT-A-G-TTG-TCGGTAGTAC-TTTTG-TA-TACT--AAAAG-ACTATGAGTAG-AT-ATAGTG---ACCAATCATCCATTTAATAGGAAAATATATGTATTGGACAGTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]

[+] EMBL SMAA85827            [AAGATGATGATGAAGATATTTATGACCCTAAAAGCAAAGGATTCTGTCGTGCATGTGTCGACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGTGTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAGCATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAACATTTGCACAGTTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTGTTCATCCACCAAAATTGGATAGTCGTAATGCATTAAGTGGATGGTTATGTATGCAACATAATTTAGTGAATAAAAAAATTGGTAAACCATTATTTGATTGTACTTATGTATTAGAAAGATGGCGATATGGTTGGAAAGATAAAGATGATTGTAAACTACCAGAACAAGATTAGTATTGTCTTTTAATGAATATGTATAATGTGTGTGTGTGTGTGTTTAGTGATTATTCAG  TTTCTTT CG  TTCTA TCTG  TTTTCTT A G TTG TC GTAGTAC TTTTG TA TACT  AAAAG ACTAT AGTAG AT ATAGTG   ACCAATCATC                                                                                               ]
[+] EMBL SMAA85828            [AAGATGATGATGAAGATATTTATGACCCTAAAAGCAAAGGATTCTGTCGTGCATGTGTCGACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGTGTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAGCATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAACATTTGCACAGTTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTGTTCATCCACCAAAATTGGATAGTCGTAATGCATTAAGTGGATGGTTATGTATGCAACATAATTTAGTGAATAAAAAAATTGGTAAACCATTATTTGATTGTACTTATGTATTAGAAAGATGGCGATATGGTTGGAAAGATAAAGATGATTGTAAACTACCAGAACAAGATTAGTATTGTCTTTTAATGAATATGTATAATGTGTGTGTGTGTGTGTTTAGTGATT TTCAG  TTTTTTTCCG  TTCTA TCTG  TTTTCTT ATG TTG TCGGTAGTAC TTTTG TA TACT  AAAAG ACTATGAGTAG                                                                                                                      ]
[+] EMBL SMAA85826            [AAGATGATGATGAAGATATTTATGACCCTAAAAGCAAAGGATTCTGTCGTGCATGTGTCGACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGTGTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAGCATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAACATTTGCACAGTTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTGTTCATCCACCAAAATTGGATAGTCGTAATGCATTAAGTGGATGGTTATGTATGC                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL AI977024             [                                                                                                                                                                                                                                                                                  TTATGATTTTGAATCTAATATTATTGTTCATCCACCAAAATTGGATAGTCGTAATGCATTAAGTGGATGGTTATGTATGCAACATAATTTAGTGAATAAAAAAATTGGTAAACCATTATTTGATTGTACTTATGTATTAGAAAGATGGCGATATGGTTGGAAAGATAAAGATGATTGTAAACTACCAGAACAAGATTAGTATTGTCTTTTAATGAATATGTATAATGTGTGTGTGTGTGTGTTTAGTGATTATTCAGATTTTCTTTCCGATTTCTATTCTGTTTTTTCTTAA GTTTGTTCGGTAGTACTTTTTGTTATTACTTAAAAAGAACTATGAGTAGTATAATAGTGTACACAAATCATTCATTTAATAGGAAAATATATGTATTGGACAGTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]




>consensus_8006#0
AAGATGATGATGAAGATATTTATGACCCTAAAAGCAAAGGATTCTGTCGTGCATGTGTCG
ACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGT
GTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAG
CATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAA
CATTTGCACAGTTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTG
TTCATCCACCAAAATTGGATAGTCGTAATGCATTAAGTGGATGGTTATGTATGCAACATA
ATTTAGTGAATAAAAAAATTGGTAAACCATTATTTGATTGTACTTATGTATTAGAAAGAT
GGCGATATGGTTGGAAAGATAAAGATGATTGTAAACTACCAGAACAAGATTAGTATTGTC
TTTTAATGAATATGTATAATGTGTGTGTGTGTGTGTTTAGTGATTATTCAGTTTCTTTCC
GTTCTATCTGTTTTCTTAGTTGTCGGTAGTACTTTTGTATACTAAAAGACTATGAGTAGA
TATAGTGACCAATCATCCATTTAATAGGAAAATATATGTATTGGACAGTTCGAAAAAAAA
AAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA

consensusID : consensus_8006#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 478
fasta sequence

                              [GAAGATATNTATGACCCTAAAAGCAAGGATTCTGTCGTGCATGTGTCGACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGTGTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAGCATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAACATTTGCACAGNTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTGTTCATCCAACAAAATTGGATAGTCGNAATGCATAAGTGGATGGTTATGTATGAACATAATTTAGTGAATAAAAAATGGTAANCATNATTGNTTGTCTTATGTTTAGAAAGATGGGATTGGTGGGAAGATAAGATGATGGTAACTACAGACAAGATAGGTTGGCTTNNATGATTGTTTNTGTGTGTGTGGT]

[+] EMBL SM959                [GAAGATATNTATGACCCTAAAAGCAAGGATTCTGTCGTGCATGTGTCGACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGTGTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAGCATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAACATTTGCACAGNTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTGTTCATCCAACAAAATTGGATAGTCGNAATGCATAAGTGGATGGTTATGTATGAACATAATTTAGTGAATAAAAAATGGTAANCATNATTGNTTGTCTTATGTTTAGAAAGATGGGATTGGTGGGAAGATAAGATGATGGTAACTACAGACAAGATAGGTTGGCTTNNATGATTGTTTNTGTGTGTGTGGT]




>consensus_8006#1
GAAGATATNTATGACCCTAAAAGCAAGGATTCTGTCGTGCATGTGTCGACTTGTCAAAGT
TCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGTGTCCACCGGATA
AAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAGCATATTACCCTA
TACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAACATTTGCACAGN
TCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTGTTCATCCAACAA
AATTGGATAGTCGNAATGCATAAGTGGATGGTTATGTATGAACATAATTTAGTGAATAAA
AAATGGTAANCATNATTGNTTGTCTTATGTTTAGAAAGATGGGATTGGTGGGAAGATAAG
ATGATGGTAACTACAGACAAGATAGGTTGGCTTNNATGATTGTTTNTGTGTGTGTGGT

consensusID : consensus_8006#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 161
fasta sequence

                              [TGGATACAATGGCAGCATATTATCCTATACATCCGACATCGAAACAANAAGNAGATATGAAGAAGTTTTTAAGNANNTGGACAGCTCTCCCCATTGCGACAANATGTTAATGNTTTTGCATCTNATNTTANTNTNCANCCANCNATATTGGTTAGCTGAAC]

[+] EMBL SM966                [TGGATACAATGGCAGCATATTATCCTATACATCCGACATCGAAACAANAAGNAGATATGAAGAAGTTTTTAAGNANNTGGACAGCTCTCCCCATTGCGACAANATGTTAATGNTTTTGCATCTNATNTTANTNTNCANCCANCNATATTGGTTAGCTGAAC]




>consensus_8006#2
TGGATACAATGGCAGCATATTATCCTATACATCCGACATCGAAACAANAAGNAGATATGA
AGAAGTTTTTAAGNANNTGGACAGCTCTCCCCATTGCGACAANATGTTAATGNTTTTGCA
TCTNATNTTANTNTNCANCCANCNATATTGGTTAGCTGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8006#0      AAGATGATGATGAAGATATTTATGACCCTAAAAGCAAAGGATTCTGTCGTGCATGTGTCG 60
consensus_8006#1      -----------GAAGATATNTATGACCCTAAAAGCAA-GGATTCTGTCGTGCATGTGTCG 48
consensus_8006#2      ------------------------------------------------------------
                                                                                  

consensus_8006#0      ACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGT 120
consensus_8006#1      ACTTGTCAAAGTTCGGTCTTTTGAAAGCAAAGGAGATGGTTTCCAAACCGAGTATAGAGT 108
consensus_8006#2      ------------------------------------------------------------
                                                                                  

consensus_8006#0      GTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAG 180
consensus_8006#1      GTCCACCGGATAAAATTGAACTTGGAAAAGCGACATGGACTTTTTTGCATACAATGGCAG 168
consensus_8006#2      ---------------------------------------------TGGATACAATGGCAG 15
                                                                   ** ************

consensus_8006#0      CATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAA 240
consensus_8006#1      CATATTACCCTATACATCCGACATCGAAACAACAAGAAGATATGAAGAAGTTTTTACAAA 228
consensus_8006#2      CATATTATCCTATACATCCGACATCGAAACAANAAGNAGATATGAAGAAGTTTTTA--AG 73
                      ******* ************************ *** *******************  * 

consensus_8006#0      CATTTGCACAGTTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTG 300
consensus_8006#1      CATTTGCACAGNTCTTCCCATGTCGACAATGTGCTTATGATTTTGAATCTAATATTATTG 288
consensus_8006#2      NANNTGGACAGCTCTCCCCATTGCGACAANATGTTAATGNTTTTGCATCTNATNTTANTN 133
                       *  ** **** *** *****  ******  ** * *** ***** **** ** *** * 

consensus_8006#0      TTCATCCACCAAAATTGGATAGTCGTAATGCATTAAGTGGATGGTTATGTATGCAACATA 360
consensus_8006#1      TTCATCCAACAAAATTGGATAGTCGNAATGCAT-AAGTGGATGGTTATGTATG-AACATA 346
consensus_8006#2      TNCANCCANCNATATTGGTTAGCTGAAC-------------------------------- 161
                      * ** *** * * ***** ***  * *                                 

consensus_8006#0      ATTTAGTGAATAAAAAAATTGGTAAACCATTATTTGATTGTACTTATGTATTAGAAAGAT 420
consensus_8006#1      ATTTAGTGAATAAAAAA--TGGTAANC-ATNATT-GNTTGT-CTTATGT-TTAGAAAGAT 400
consensus_8006#2      ------------------------------------------------------------
                                                                                  

consensus_8006#0      GGCGATATGGTTGGAAAGATAAAGATGATTGTAAACTACCAGAACAAGATTAGTATTGTC 480
consensus_8006#1      GGG---ATTGGTGGGAAGATAA-GATGATGGTAA-CTAC--AGACAAGATAGG--TTGGC 451
consensus_8006#2      ------------------------------------------------------------
                                                                                  

consensus_8006#0      TTTTAATGAATATGTATAATGTGTGTGTGTGTGTGTTTAGTGATTATTCAGTTTCTTTCC 540
consensus_8006#1      TTNNA-TGATTGTTTNTG-TGTGTGTG-GT------------------------------ 478
consensus_8006#2      ------------------------------------------------------------
                                                                                  

consensus_8006#0      GTTCTATCTGTTTTCTTAGTTGTCGGTAGTACTTTTGTATACTAAAAGACTATGAGTAGA 600
consensus_8006#1      ------------------------------------------------------------
consensus_8006#2      ------------------------------------------------------------
                                                                                  

consensus_8006#0      TATAGTGACCAATCATCCATTTAATAGGAAAATATATGTATTGGACAGTTCGAAAAAAAA 660
consensus_8006#1      ------------------------------------------------------------
consensus_8006#2      ------------------------------------------------------------
                                                                                  

consensus_8006#0      AAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA 712
consensus_8006#1      ----------------------------------------------------
consensus_8006#2      ----------------------------------------------------