cluster # 8042

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Schistosoma mansoni
cluster # 8042 cluster # 8042 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8042#0 length = 894 sequences # 5

consensus_8042#1 length = 380 sequences # 1

consensusID : consensus_8042#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 894
fasta sequence

                              [GCAGACCAGTTAATAGCTACTTTTACACAACACACCAAAACTTTACGAAAATCATGAACGAAGCGACTTACAAACTAGAAGAGATTAAACATCATGCTGATCAGTCGTATTTTGACAGGACGACCATTAAGCCCACATTGAAAGAAGTCCATTGTGCGACGTCAAGCGACTTTATGTCGAAAATAAATCTCATGAAAATGATTAACGAAACTATATCGGATGCACAGTATAAACAGTGGTTAGTCTTAATGAAGCGTTTATCAGAACACCCACTGTCGTATTTGGTCGAAGAATTTATTCAGCGTTTTAAAGCCCAAATATGCGGTCCTACTTCAGAGATTAAATTTCCCGAGCCATTTCTAGACTCAGTAACAAACAGAAAATGTGTGCAAGCATTTGGTCAAAAGAAAAACTCGTTTGCTGAAGTAACACTATACATGCCTGGCACTGGTGACGTCACAGTAAACGGAGCACGACTTCTAGAAGTATTTCCTGAGCTTGGAAATCGAGAACAAATAGTATTCCCTTTACAACAAACAAACACTGTTGGTAAAGTAGACATAATTGCTACAGTAAGCGGGGACGGTTCGAGCAGTTTGGCGAATGCTCTTCGTTTGGCGATAGCCAGGTGTTTGGCCTCAATGCTTCCGATAGATCAGGGAAAAAACAGACTATTGGTAACTGGTTTATTGTCTCAGGATAACCGGTTTGCGG--AACGTAAGCAACCAGGTCAAAGAAAAGCACGCAAGAAGCCTATTTGGAAGGCACGCTAA-ATTCACAAGTACTGAAATAAAATGCANNNGC-AC-ACATTNTTCCTTTTCATTAGNCG-TC-ATACTGGNCCGCAGATTTC-NCGNCTTGGNTTTCAGCTCGATCATC-AANGAAGAAAGC-CAGATG]

[-] EMBL CD146092             [GCAGACCAGTTAATAGCTACTTTTACACAACACACCAAAACTTTACGAAAATCATGAACGAAGCGACTTACAAACTAGAAGAGATTAAACATCATGCTGATCAGTCGTATTTTGACAGGACGACCATTAAGCCCACATTGAAAGAAGTCCATTGTGCGACGTCAAGCGACTTTATGTCGAAAATAAATCTCATGAAAATGATTAACGAAACTATATCGGATGCACAGTATAAACAGTGGTTAGTCTTAATGAAGCGTTTATCAGAACACCCACTGTCGTATTTGGTCGAAGAATTTATTCAGCGTTTTAAAGCCCAAATATGCGGTCCTACTTCAGAGATTAAATTTCCCGAGCCATTTCTAGACTCAGTAACAAACAGAAAATGTGTGCAAGCATTTGGTCAAAAGAAAAACTCGTTTGCTGAAGTAACACTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD083203             [                                                           GAGGCGACTTACAAACTAGAAGAGATTAAACATCATGCTGATCAGTCGTATTTTGACAGGACGACCATTAAGCCCACATTGAAAGAAGTCCATTGTGCGACGTCAAGCGACTTTATGTCGAAAATAAATCTCATGAAAATGATTAACGAAACTATATCGGATGCACAGTATAAACAGTGGTTAGTCTTAATGAAGCGTTTATCAGAACACCCACTGTCGTATTTGGTCGAAGAATTTATTCAGCGTTTTAAAGCCCAAATATGCGGTCCTACTTCAGAGATTAAATTTCCCGAGCCATTTCTAGACTCAGTAACAAACAGAAAATGTGTGCAAGCATTTGGTCAAAAGAAAAACTCGTTTGCTGAAGTAACACTATACATGCCTGGCACTGGTGACGTCACAGTAAACGGAGCACGACTTCTAGAAGTATTTCCTGAGCTTGGAAATCGAGAACAAATAGTATTCCCTTTACAACAAACAAACACTGTTGGTAAAGTAGACATAATTGCTACAGTAAGCGGGGACGGTTCGAGCAGTTTGGCGAATGCTCTTCGTTTGGCGATAGCCAGGTGTTTGGCCTCAATGCTTCCGATAGATCAGGGAAAAAACAGACTATTGGTAACTGGTTTATTGTCTCAGGATAACCGGTTTGCGGAAAACGT AGC ACCAGGTCAAAGAAAAGCACGNCAGAAGCCTATTTGGAAGGCACGCTAANNNTCAC AGTACTGAAATAAAATGCANNNGC AC ACATTNTTCCTTTTCATTAGNCG TC ATACTGGNCCGCAGATTTC NCGNCTTGGNTTTCAGCTCGATCATC AANGAAGAAAGC CAG   ]
[+] EMBL CD198268             [                                                                                                                                                                      CGACTTTATGTCGAAAATAAATCTCATGAAAATGATTAACGAAACTATATCGGATGCACAGTATAAACAGTGGTTAGTCTTAATGAAGCGTTTATCAGAACACCCACTGTCGTATTTGGTCGAAGAATTTATTCAGCGTTTTAAAGCCCAAATATGCGGTCCTACTTCAGAGATTAAATTTCCCGAGCCATTTCTAGACTCAGTAACAAACAGAAAATGTGTGCAAGCATTTGGTCAAAAGAAAAACTCGTTTGCTGAAGTAACACTATACATGCCTGGCACTGGTGACGTCACAGTAAACGGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD076778             [                                                                                                                                                                                                                                                                                                                             ATATGCGGTCCTACTTCAGAGATTAAATTTCCCGAGCCATTTCTAGACTCAGTAACAAACAGAAAATGTGTGCAAGCATTTGGTCAAAAGAAAAACTCGTTTGCTGAAGTAACACTATACATGCCTGGCACTGGTGACGTCACAGTAAACGGAGCACGACTTCTAGAAGTATTTCCTGAGCTTGGAAATCGAGAACAAATAGTATTCCCTTTACAACAAACAAACACTGTTGGTAAAGTAGACATAATTGCTACAGTAAGCGGGGACGGTTCGAGCAGTTTGGCGAATGCTCTTCGTTTGGCGATAGCCAGGTGTTTGGCCTCAATGCTTCCGATAGATCAGGGAAAAAACAGACTATTGGTAACTGGTTTATTGTCTCAGGATAACCGGTTTGCGG  AACGTAAGCAACCAGGTCAAAGAAAAGCACGCAAGAAGCCTATTTGGAAGGCACGCTAA ATTCACAAGTACTGAATAAAAATGCA  AGCAACAACATTTTTCCTTTTCATTAG CGTTCAATACTGGCCCGCAGATTTCGCCGCCTTGGTTTCCAGCTCGATCATCTAAAGAAGAAAGCACAGATG]
[+] EMBL CD170693             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AACAAATAGTATTCCCTTTACAACAAACAAACACTGTTGGTAAAGTAGACATAATTGCTACAGTAAGCGGGGACGGTTCGAGCAGTTTGGCGAATGCTCTTCGTTTGGCGATAGCCAGGTGTTTGGCCTCAATGCTTCCGATAGATCAGGGAAAAAACAGACTATTGGTAACTGGTTTATTGTCTCAGGATAACCGGTTTGCGG  AACGTAAGCAACCAGGTCAAAGAAAAGCACGCAAGAAGCCTATTTGGAAGGCACGCTAA ATTCACAAGTACTG                                                                                                                  ]




>consensus_8042#0
GCAGACCAGTTAATAGCTACTTTTACACAACACACCAAAACTTTACGAAAATCATGAACG
AAGCGACTTACAAACTAGAAGAGATTAAACATCATGCTGATCAGTCGTATTTTGACAGGA
CGACCATTAAGCCCACATTGAAAGAAGTCCATTGTGCGACGTCAAGCGACTTTATGTCGA
AAATAAATCTCATGAAAATGATTAACGAAACTATATCGGATGCACAGTATAAACAGTGGT
TAGTCTTAATGAAGCGTTTATCAGAACACCCACTGTCGTATTTGGTCGAAGAATTTATTC
AGCGTTTTAAAGCCCAAATATGCGGTCCTACTTCAGAGATTAAATTTCCCGAGCCATTTC
TAGACTCAGTAACAAACAGAAAATGTGTGCAAGCATTTGGTCAAAAGAAAAACTCGTTTG
CTGAAGTAACACTATACATGCCTGGCACTGGTGACGTCACAGTAAACGGAGCACGACTTC
TAGAAGTATTTCCTGAGCTTGGAAATCGAGAACAAATAGTATTCCCTTTACAACAAACAA
ACACTGTTGGTAAAGTAGACATAATTGCTACAGTAAGCGGGGACGGTTCGAGCAGTTTGG
CGAATGCTCTTCGTTTGGCGATAGCCAGGTGTTTGGCCTCAATGCTTCCGATAGATCAGG
GAAAAAACAGACTATTGGTAACTGGTTTATTGTCTCAGGATAACCGGTTTGCGGAACGTA
AGCAACCAGGTCAAAGAAAAGCACGCAAGAAGCCTATTTGGAAGGCACGCTAAATTCACA
AGTACTGAAATAAAATGCANNNGCACACATTNTTCCTTTTCATTAGNCGTCATACTGGNC
CGCAGATTTCNCGNCTTGGNTTTCAGCTCGATCATCAANGAAGAAAGCCAGATG

consensusID : consensus_8042#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [AATATATTTAATCGTAATGACTTTTTAATTTTATTATCCATTTCAGGAAGGCACGCTAAATTCACAAGTACTGAATAAAAATGCAAGCAACAACATTTTTCCTTTTCATTAGCGTTCAATACTGGCCCGCAGATTTCGCCGCCTTGGTTTCCAGCTCGATCATTCGTTTAACATACTTTGGATTTGTCACTAGCCGGTCAGTTAACTGCATAAAATGCTTGTCCAAATTCACACATTCTGTTATTTTTTCCTGAAGAATTCGAAGCATTTTGATCGAGTCATACTGCTCGGGGTCATCGAGGAAATGAACAGTCCCACTTTGTTGATCGATGATTGCAAAAATAGCTTTTGACTTAATCATATCTAAAATCTGTTTCTCC]

[+] EMBL CD077177             [AATATATTTAATCGTAATGACTTTTTAATTTTATTATCCATTTCAGGAAGGCACGCTAAATTCACAAGTACTGAATAAAAATGCAAGCAACAACATTTTTCCTTTTCATTAGCGTTCAATACTGGCCCGCAGATTTCGCCGCCTTGGTTTCCAGCTCGATCATTCGTTTAACATACTTTGGATTTGTCACTAGCCGGTCAGTTAACTGCATAAAATGCTTGTCCAAATTCACACATTCTGTTATTTTTTCCTGAAGAATTCGAAGCATTTTGATCGAGTCATACTGCTCGGGGTCATCGAGGAAATGAACAGTCCCACTTTGTTGATCGATGATTGCAAAAATAGCTTTTGACTTAATCATATCTAAAATCTGTTTCTCC]




>consensus_8042#1
AATATATTTAATCGTAATGACTTTTTAATTTTATTATCCATTTCAGGAAGGCACGCTAAA
TTCACAAGTACTGAATAAAAATGCAAGCAACAACATTTTTCCTTTTCATTAGCGTTCAAT
ACTGGCCCGCAGATTTCGCCGCCTTGGTTTCCAGCTCGATCATTCGTTTAACATACTTTG
GATTTGTCACTAGCCGGTCAGTTAACTGCATAAAATGCTTGTCCAAATTCACACATTCTG
TTATTTTTTCCTGAAGAATTCGAAGCATTTTGATCGAGTCATACTGCTCGGGGTCATCGA
GGAAATGAACAGTCCCACTTTGTTGATCGATGATTGCAAAAATAGCTTTTGACTTAATCA
TATCTAAAATCTGTTTCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8042#0      GCAGACCAGTTAATAGCTACTTTTACACAAC-ACACCAAAACTTTACGAAAATCATGAAC 59
consensus_8042#1      -----------AATA--TATTTAATCGTAATGACTTTTTAATTTTATTATCCATTTCAGG 47
                                 ****  ** **   *  **  **     ** ****  *      * *  

consensus_8042#0      GAAGCGACTTACAAACTAGAAGAGATTAAACATCATGCTGATCAGTCGTATTTTGACAGG 119
consensus_8042#1      AAGGCACGCTA--AATTCACAAGTACTGAATAAAAATGCAAGCAACAACATTTTT----- 100
                       * **    **  ** *   *   * * ** *  *     * **     *****      

consensus_8042#0      ACGACCATTAAGCCCACATTGAAAGAAGTCCATTGTGCGACGTCAAGCGACTTTATGTCG 179
consensus_8042#1      ----CCTTTTCATTAGCGTTCAATACTGGCC----CGCAGATTTCGCCGCCTTGGTTTCC 152
                          ** **       * ** **    * **     **    *    ** ***  * ** 

consensus_8042#0      AAAATAAATCTCATGAAAATGATTAACGAAACTATATCGGATGCACAGTATAAACAGTGG 239
consensus_8042#1      AG-------CTCGATCATTCGTTTAACA----TACTTTGGATTTGTCAC-TAGCCGGTCA 200
                      *        ***    *   * *****     **  * ****        **  * **  

consensus_8042#0      TTAGTCTTAATGAAGCGTTTATCAGAACACCCAC----TGTCGTATTTGGTCGAAGAATT 295
consensus_8042#1      GTTAACTGCATAAAATGCTTGTCCAAATTCACACATTCTGTTATTTTTTCCTGAAGAATT 260
                       *   **  ** **  * ** **  **  * ***    ***  * ***    ********

consensus_8042#0      TATTCAGCGTTTTAAAGCCCAAATATGCGGTCCTACTTCAGAGATTAAATTTCCCGAGCC 355
consensus_8042#1      CGA--AGCATTTTGA--TCGAGTCATACTGCTCGGGGTCATCGAGGAAATGAACAGTCCC 316
                           *** **** *   * *   ** * *  *    ***  **  ****   * *  **

consensus_8042#0      ATTTCTAGACTCAGTAACAAACAGAAAATGTGTGCAAGCATTTGGTCAAAAGAAAAACTC 415
consensus_8042#1      ACTTTGTTGATCGATGATTG-CAAAAATAGCTTTTG---ACTTAATCATATCTAAAATCT 372
                      * **      **  * *    ** ***  *  *      * **  *** *   ****   

consensus_8042#0      GTTTGCTGAAGTAACACTATACATGCCTGGCACTGGTGACGTCACAGTAAACGGAGCACG 475
consensus_8042#1      GTTTCTCC---------------------------------------------------- 380
                      ****                                                        

consensus_8042#0      ACTTCTAGAAGTATTTCCTGAGCTTGGAAATCGAGAACAAATAGTATTCCCTTTACAACA 535
consensus_8042#1      ------------------------------------------------------------
                                                                                  

consensus_8042#0      AACAAACACTGTTGGTAAAGTAGACATAATTGCTACAGTAAGCGGGGACGGTTCGAGCAG 595
consensus_8042#1      ------------------------------------------------------------
                                                                                  

consensus_8042#0      TTTGGCGAATGCTCTTCGTTTGGCGATAGCCAGGTGTTTGGCCTCAATGCTTCCGATAGA 655
consensus_8042#1      ------------------------------------------------------------
                                                                                  

consensus_8042#0      TCAGGGAAAAAACAGACTATTGGTAACTGGTTTATTGTCTCAGGATAACCGGTTTGCGGA 715
consensus_8042#1      ------------------------------------------------------------
                                                                                  

consensus_8042#0      ACGTAAGCAACCAGGTCAAAGAAAAGCACGCAAGAAGCCTATTTGGAAGGCACGCTAAAT 775
consensus_8042#1      ------------------------------------------------------------
                                                                                  

consensus_8042#0      TCACAAGTACTGAAATAAAATGCANNNGCACACATTNTTCCTTTTCATTAGNCGTCATAC 835
consensus_8042#1      ------------------------------------------------------------
                                                                                  

consensus_8042#0      TGGNCCGCAGATTTCNCGNCTTGGNTTTCAGCTCGATCATCAANGAAGAAAGCCAGATG 894
consensus_8042#1      -----------------------------------------------------------