cluster # 8044

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Schistosoma mansoni
cluster # 8044 cluster # 8044 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8044#0 length = 920 sequences # 2
consensus_8044#1 length = 527 sequences # 1

consensus_8044#2 length = 451 sequences # 1
consensus_8044#3 length = 353 sequences # 2

consensusID : consensus_8044#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 920
fasta sequence

                              [TTTGGCACGAGGAGGTTGTGTAATCAGCTTACTTGAGCGGTATCCCAAGAATTTAATGAATACATACTAGTTGTTTGATTATCTGAATAACGACGTACAACTACTGACTTGATCTTTCTAGTTTCTGTTACAGCTTTGTTTTTTGTAATCACGTGTTTCTTTAAAGGGACAAACACATCAGAAATATAATAATAATTGACTGACGAGTTCTTATGTGTAAACTGCCGCTACGTCGTTAACGCTCTGGAACTTATTCCTCCTCATAATCCGAGTGCTTTGCATTCACTGAGTTATCGTCCGTGCGTACGTAATAGACTGATTGACCGCCAAACTTACTTCAGTCTTTCCCCACAGTTTACCGAAAACAACGTACTTCTAACCCAAATGGTCACCGTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAAAATAACA-CTGTGTACGATAG-TAGTGAGAGACGA-GTTGATGTGTACTCAGATGCGCAAGTAATATTGAGGATGATCAAAGAGTCTTCGAAAATTAAATTGGGATGTGCTTCACGTACTTCTGCTATCAGTGTTGCTCGACAACTTCTACAAGCTCTTAATTGGTCAGATCTATTTGATTACACAGAAATCTACCCTGGTTCCAAACTGCTCACTTTAAAAGATTCATGATTATCTGGTATAGATATGCAGAATGTATTTTTCGATGATGAACTCGTACATTATGACATTCTAATTAGTGTCATGTATTTAGTGACATGGATACATNAATCTTTGAAGATGCTTANAAATTCACACAAGAGAATCTGATTTAAATGACTAGTTTATGATTATCCGCAAAGGAATATTTTCTGAAA]

[+] EMBL CD079832             [TTTGGCACGAGGAGGTTGTGTAATCAGCTTACTTGAGCGGTATCCCAAGAATTTAATGAATACATACTAGTTGTTTGATTATCTGAATAACGACGTACAACTACTGACTTGATCTTTCTAGTTTCTGTTACAGCTTTGTTTTTTGTAATCACGTGTTTCTTTAAAGGGACAAACACATCAGAAATATAATAATAATTGACTGACGAGTTCTTATGTGTAAACTGCCGCTACGTCGTTAACGCTCTGGAACTTATTCCTCCTCATAATCCGAGTGCTTTGCATTCACTGAGTTATCGTCCGTGCGTACGTAATAGACTGATTGACCGCCAAACTTACTTCAGTCTTTCCCCACAGTTTACCGAAAACAACGTACTTCTAACCCAAATGGTCACCGTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAAAATAACA CTGTGTACGATAG TAGTGAGAGACGA GTTGATGTGTACTCAGATGCGCAAGTAATATTGAGGATGATCAAAGAGTCTTCGAAAATTAAATTGGGATGTGCTTCACGTACTTCTGCTATCAGTGTTGCTCGACAACTTCTACAAGCTCTTAATTGGTCAGATCTATTTGATTACACAGAAATCTACCCTGGTTCCAAACTGCTCACTTTAAAAGATTCATGATTATCTGGTATAGATATGCAGAATGTATTTTTCGATGATGAACTCGTACATTATGACATTCTAATTAGTGTCATGTATTTAGTGACATGGATACATNAATCTTTGAAGATGCTTANAAATTCACACAAGAGAATCTGATTTAAATGACTAGTTTATGATTATCCGCAAAGGAATATTTTCTGAAA]
[-] EMBL CD157280             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      atctgTCCATTCATACAACAAAATAACAGCTGTGTACGATAGCTAGTGAGAGACGACGTTGATGTGTACTCAGATGCGCAAGTAATATTGAGGATGATCAAAGAGTCTTCGAAAA                                                                                                                                                                                                                                                                                                                                  ]




>consensus_8044#0
TTTGGCACGAGGAGGTTGTGTAATCAGCTTACTTGAGCGGTATCCCAAGAATTTAATGAA
TACATACTAGTTGTTTGATTATCTGAATAACGACGTACAACTACTGACTTGATCTTTCTA
GTTTCTGTTACAGCTTTGTTTTTTGTAATCACGTGTTTCTTTAAAGGGACAAACACATCA
GAAATATAATAATAATTGACTGACGAGTTCTTATGTGTAAACTGCCGCTACGTCGTTAAC
GCTCTGGAACTTATTCCTCCTCATAATCCGAGTGCTTTGCATTCACTGAGTTATCGTCCG
TGCGTACGTAATAGACTGATTGACCGCCAAACTTACTTCAGTCTTTCCCCACAGTTTACC
GAAAACAACGTACTTCTAACCCAAATGGTCACCGTGGATTTCCTAAGTGCATTCTCTCGG
CTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACT
CACGTTTATCCTCCATTCATACAAAAAAATAACACTGTGTACGATAGTAGTGAGAGACGA
GTTGATGTGTACTCAGATGCGCAAGTAATATTGAGGATGATCAAAGAGTCTTCGAAAATT
AAATTGGGATGTGCTTCACGTACTTCTGCTATCAGTGTTGCTCGACAACTTCTACAAGCT
CTTAATTGGTCAGATCTATTTGATTACACAGAAATCTACCCTGGTTCCAAACTGCTCACT
TTAAAAGATTCATGATTATCTGGTATAGATATGCAGAATGTATTTTTCGATGATGAACTC
GTACATTATGACATTCTAATTAGTGTCATGTATTTAGTGACATGGATACATNAATCTTTG
AAGATGCTTANAAATTCACACAAGAGAATCTGATTTAAATGACTAGTTTATGATTATCCG
CAAAGGAATATTTTCTGAAA

consensusID : consensus_8044#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [TCGAGGCCCAGAATCGGCACGAGGAGTCCTTCAAGGTTGTGTAATCAGCTTACTTGAGCGGTATCCCAAGAATTTAATGAATACATACTAGTTGTTTGATTATCTGAATAACGACGTACAACTACTGACTTGATCTTTCTAGTTTCTGTTACAGCTTTGTTTTTTGTAATCACGTGTTTCTTTAAAGGGACAAACACATCAGAAATATAATAATAATTGACTGACGAGTTCTTATGTGTAAACTGCCGCTACGTCGTTAACGCTCTGGAACTTATTCCTCCTCATAATCCGAGTGCTTTGCATTCACTGAGTTATCGTCCGTGCTTTACCGAAAACAACGTACTTCTAACCCAAATGGTCACCGTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGA]

[+] EMBL CD083850             [TCGAGGCCCAGAATCGGCACGAGGAGTCCTTCAAGGTTGTGTAATCAGCTTACTTGAGCGGTATCCCAAGAATTTAATGAATACATACTAGTTGTTTGATTATCTGAATAACGACGTACAACTACTGACTTGATCTTTCTAGTTTCTGTTACAGCTTTGTTTTTTGTAATCACGTGTTTCTTTAAAGGGACAAACACATCAGAAATATAATAATAATTGACTGACGAGTTCTTATGTGTAAACTGCCGCTACGTCGTTAACGCTCTGGAACTTATTCCTCCTCATAATCCGAGTGCTTTGCATTCACTGAGTTATCGTCCGTGCTTTACCGAAAACAACGTACTTCTAACCCAAATGGTCACCGTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGA]




>consensus_8044#1
TCGAGGCCCAGAATCGGCACGAGGAGTCCTTCAAGGTTGTGTAATCAGCTTACTTGAGCG
GTATCCCAAGAATTTAATGAATACATACTAGTTGTTTGATTATCTGAATAACGACGTACA
ACTACTGACTTGATCTTTCTAGTTTCTGTTACAGCTTTGTTTTTTGTAATCACGTGTTTC
TTTAAAGGGACAAACACATCAGAAATATAATAATAATTGACTGACGAGTTCTTATGTGTA
AACTGCCGCTACGTCGTTAACGCTCTGGAACTTATTCCTCCTCATAATCCGAGTGCTTTG
CATTCACTGAGTTATCGTCCGTGCTTTACCGAAAACAACGTACTTCTAACCCAAATGGTC
ACCGTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGAC
TTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAAAAT
AACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGA

consensusID : consensus_8044#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 451
fasta sequence

                              [TTGGCCTCGAGGCAGATCGGCACGAGGCGGCTCCTAAACTTATCGTGTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAGTGAGGCTCTTATAAAATTTTTCTCAGGAATGGTGATCTGTTAGAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGATGCGCAAGTATTATTGAGGATGATCAAAGAGTCTTCGAAAATTAAATTGGGATGTGCTTCACGTACTTCTGCTATCAGTGTTGCTCGACAACTTCTACAAGCTCTTAATTGGTCAGATTTATTTGATTACACAGAAATATACCCTGGTTCCAAAACTGCTCACTTTAAAAGATTTCATGAATTATCTGGTATAGACTATGCAGATATGTTATTTTTTGATGATGAAACTCGTAACATTCATG]

[+] EMBL CD084019             [TTGGCCTCGAGGCAGATCGGCACGAGGCGGCTCCTAAACTTATCGTGTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAGTGAGGCTCTTATAAAATTTTTCTCAGGAATGGTGATCTGTTAGAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGATGCGCAAGTATTATTGAGGATGATCAAAGAGTCTTCGAAAATTAAATTGGGATGTGCTTCACGTACTTCTGCTATCAGTGTTGCTCGACAACTTCTACAAGCTCTTAATTGGTCAGATTTATTTGATTACACAGAAATATACCCTGGTTCCAAAACTGCTCACTTTAAAAGATTTCATGAATTATCTGGTATAGACTATGCAGATATGTTATTTTTTGATGATGAAACTCGTAACATTCATG]




>consensus_8044#2
TTGGCCTCGAGGCAGATCGGCACGAGGCGGCTCCTAAACTTATCGTGTCGATCTTGACTT
CACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAGTGAGG
CTCTTATAAAATTTTTCTCAGGAATGGTGATCTGTTAGAAATAACACTGTGTACGATAGT
AGTGAGAGACGAGTTGATGTGTACTCAGATGCGCAAGTATTATTGAGGATGATCAAAGAG
TCTTCGAAAATTAAATTGGGATGTGCTTCACGTACTTCTGCTATCAGTGTTGCTCGACAA
CTTCTACAAGCTCTTAATTGGTCAGATTTATTTGATTACACAGAAATATACCCTGGTTCC
AAAACTGCTCACTTTAAAAGATTTCATGAATTATCTGGTATAGACTATGCAGATATGTTA
TTTTTTGATGATGAAACTCGTAACATTCATG

consensusID : consensus_8044#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 353
fasta sequence

                              [TTATCGTCCGTGCGTACGTAATAGACTGATTGACCGCCAAACTTACTTCAGTCTTTCTCCACAGTTTACCGAAAACAACGTACTTCTAACCCAAATGGTCACCTTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCCCCATTCATACAAAAGTGAGGCTCTCATAAAATTTTTATCAGGAATGGTGATCTGTTAGAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGATGCGCAAGTAATAATTGAGGATGATCAAAGAGTCTTCGAAAA]

[-] EMBL CD157162             [TTATCGTCCGTGCGTACGTAATAGACTGATTGACCGCCAAACTTACTTCAGTCTTTCTCCACAGTTTACCGAAAACAACGTACTTCTAACCCAAATGGTCACCTTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCCCCATTCATACAAAAGTGAGGCTCTCATAAAATTTTTATCAGGAATGGTGATCTGTTAGAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGATGCGCAAGTAATAATTGAGGATGATCAAAGAGTCTTCGAAAA]
[-] EMBL CD157190             [TTATCGTCCGTGCGTACGTAATAGACTGATTGGCCGCCAAACTTACTTCAGTCTTTCTCCACAGTTTACCGAAAACAACGTACTTCTAACCCAAATGGTCACCGTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAGTGAGGCTCTTATAAAATTTTTCTCAGGAATGGTGATCTGTTAGAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGATGCGCAAGTAAT ATTGAGGATGATCAAAGAGTCTTCGAAAA]




>consensus_8044#3
TTATCGTCCGTGCGTACGTAATAGACTGATTGACCGCCAAACTTACTTCAGTCTTTCTCC
ACAGTTTACCGAAAACAACGTACTTCTAACCCAAATGGTCACCTTGGATTTCCTAAGTGC
ATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTCTGTG
GTGCGACACTCACGTTTATCCCCCATTCATACAAAAGTGAGGCTCTCATAAAATTTTTAT
CAGGAATGGTGATCTGTTAGAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGAT
GTGTACTCAGATGCGCAAGTAATAATTGAGGATGATCAAAGAGTCTTCGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8044#2      ------------------------------------------------------------
consensus_8044#3      ------------------------------------------------------------
consensus_8044#0      TTTGGCACGAGGAGGTTGTGTAATCAGCTTACTTGAGCGGTATCCCAAGAATTTAATGAA 60
consensus_8044#1      ------------------------------------------------------------
                                                                                  

consensus_8044#2      ------------------------------------------------------------
consensus_8044#3      ------------------------------------------------------------
consensus_8044#0      TACATACTAGTTGTTTGATTATCTGAATAACGACGTACAACTACTGACTTGATCTTTCTA 120
consensus_8044#1      ------------------------------------------------------------
                                                                                  

consensus_8044#2      ------------------------------------------------------------
consensus_8044#3      ------------------------------------------------------------
consensus_8044#0      GTTTCTGTTACAGCTTTGTTTTTTGTAATCACGTGTTTCTTTAAAGGGACAAACACATCA 180
consensus_8044#1      ------------------------------------------------------------
                                                                                  

consensus_8044#2      ------------------------------------------------------------
consensus_8044#3      ------------------------------------------------------------
consensus_8044#0      GAAATATAATAATAATTGACTGACGAGTTCTTATGTGTAAACTGCCGCTACGTCGTTAAC 240
consensus_8044#1      ------------------------------------------------------------
                                                                                  

consensus_8044#2      ------------------------------------------------------------
consensus_8044#3      --------------------------------------------------TTATCGTCCG 10
consensus_8044#0      GCTCTGGAACTTATTCCTCCTCATAATCCGAGTGCTTTGCATTCACTGAGTTATCGTCCG 300
consensus_8044#1      -----------------------------------------------------TCGAGGC 7
                                                                                  

consensus_8044#2      ------------------------------------------------------------
consensus_8044#3      TGCGTACGTAATAGACTGATTGACCGCCAAACTTACTTCAGTCTTTCTCCACAGTTTACC 70
consensus_8044#0      TGCGTACGTAATAGACTGATTGACCGCCAAACTTACTTCAGTCTTTCCCCACAGTTTACC 360
consensus_8044#1      CCAGAATCGGCACGAGGAGTCCTTCAAGGTTGTGTAATCAGCTTACTTGAGCGGTATCCC 67
                                                                                  

consensus_8044#2      ---------------------------TTGGCCTCGAGGCAGATCGGCACGAG---GCGG 30
consensus_8044#3      GAAAACAACGTACTTCTAACCCAAATGGTCACCTTGGATTTCCTAAGTGCATTCTCTCGG 130
consensus_8044#0      GAAAACAACGTACTTCTAACCCAAATGGTCACCGTGGATTTCCTAAGTGCATTCTCTCGG 420
consensus_8044#1      AAGAATTTAATGAATACATACTAGTTGTTTGATT--ATCTGAATAACGACGTACAACTAC 125
                                                  *              *     *          

consensus_8044#2      CT-CCTAAACTTATCGTGT-CGATCTTGACTTCACTCTTTGGCCTC-TGTGGTGCGACAC 87
consensus_8044#3      CTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTC-TGTGGTGCGACAC 189
consensus_8044#0      CTTCCTAAACTTATCGTGTTCGATCTTGACTTCACTCTTTGGCCTC-TGTGGTGCGACAC 479
consensus_8044#1      TGACTTGATCTTTCTAGTTTCTGTTACAGCTTTGTTTTTTGTAATCACGTGTTTCTTTAA 185
                         * * * ***      * *  *     ***   * ****   **  *** * *   * 

consensus_8044#2      TCACGTTTATCCTCCATTCATACAAAAGTGAGGCTCTTATAAAATTTT-TCTCAGGAATG 146
consensus_8044#3      TCACGTTTATCCCCCATTCATACAAAAGTGAGGCTCTCATAAAATTTT-TATCAGGAATG 248
consensus_8044#0      TCACGTTTATCCTCCATTCATACAAAA--------------------------------- 506
consensus_8044#1      AGGGACAAACACATCAGAAATATAATAATAATTGACTGACGAGTTCTTATGTGTAAACTG 245
                              *  *  **   *** ** *                                 

consensus_8044#2      GTGATCTGTTAGAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTC 206
consensus_8044#3      GTGATCTGTTAGAAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTC 308
consensus_8044#0      ------------AAATAACACTGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTC 554
consensus_8044#1      CCGCTACGTCGTTAACGCTCTGGAACTTATTCCTCCTCATAATCCGAGTGCTTTGCATTC 305
                                   **       *       *  *  * * *  *    ** * ** * **

consensus_8044#2      AGATGCGCAAGTATTA-TTGAGGATGATCAAAGAGTCTTCGAAAATTAAATTGGGATGTG 265
consensus_8044#3      AGATGCGCAAGTAATAATTGAGGATGATCAAAGAGTCTTCGAAAA--------------- 353
consensus_8044#0      AGATGCGCAAGTAATA-TTGAGGATGATCAAAGAGTCTTCGAAAATTAAATTGGGATGTG 613
consensus_8044#1      A----CTGAGTTATCGTCCGTGCTTTACCGAAAA--CAACGTACTTCTAACCCAAATGGT 359
                      *    *  *  **      * *  * * * ** *  *  ** *                 

consensus_8044#2      CTTCACGTACTTCTGCTATCAGTGTT----GCTCGACAACTTCTACAAGCTCTTAATTGG 321
consensus_8044#3      ------------------------------------------------------------
consensus_8044#0      CTTCACGTACTTCTGCTATCAGTGTT----GCTCGACAACTTCTACAAGCTCTTAATTGG 669
consensus_8044#1      CACCGTGGATTTCCTAAGTGCATTCTCTCGGCTTCCTAAACTTATCGTGTTCGATCTTGA 419
                                                                                  

consensus_8044#2      TCAGATTTATTTGATTACACAGAAATATACCCTGGTTCCAAAACTGCTCACTTTAAAAGA 381
consensus_8044#3      ------------------------------------------------------------
consensus_8044#0      TCAGATCTATTTGATTACACAGAAATCTACCCTGGTTCCAAA-CTGCTCACTTTAAAAGA 728
consensus_8044#1      CTTCACTCTTTGGCCTCTGTGGTGCGACACTCACGTTTATCCTCCATTCATACAAAAAAA 479
                                                                                  

consensus_8044#2      TTTCATGAATTATCTGGTATAGACTATGCAGATATGTTATTTTTTGATGA---TGAAACT 438
consensus_8044#3      ------------------------------------------------------------
consensus_8044#0      TT-CATGA-TTATCTGGTATAGATATGCAGAATGTATTTTTCGATGATGAACTCGTACAT 786
consensus_8044#1      TAACAC----TGTGTACGATAGTAGTGAGAGACGAGTTGATGTGTACTCAGA-------- 527
                                                                                  

consensus_8044#2      CGTAACATTCATG----------------------------------------------- 451
consensus_8044#3      ------------------------------------------------------------
consensus_8044#0      TATGACATTCTAATTAGTGTCATGTATTTAGTGACATGGATACATNAATCTTTGAAGATG 846
consensus_8044#1      ------------------------------------------------------------
                                                                                  

consensus_8044#2      ------------------------------------------------------------
consensus_8044#3      ------------------------------------------------------------
consensus_8044#0      CTTANAAATTCACACAAGAGAATCTGATTTAAATGACTAGTTTATGATTATCCGCAAAGG 906
consensus_8044#1      ------------------------------------------------------------
                                                                                  

consensus_8044#2      --------------
consensus_8044#3      --------------
consensus_8044#0      AATATTTTCTGAAA 920
consensus_8044#1      --------------