cluster # 8051

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Schistosoma mansoni
cluster # 8051 cluster # 8051 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8051#0 length = 814 sequences # 5

consensus_8051#1 length = 259 sequences # 1

consensusID : consensus_8051#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 814
fasta sequence

                              [AATTTGACTAACCATTCGTTCAAAATCAGCATAGTGATTCATCATAATTCTTTTTGTTGGAAGTGTTCAGTTATCCAAATTATGTCTTATAATCCTTATCTTTTCACTTAATTTGACGTATTTTTAAATATTGTGCGTTTTTCTATTAGGAATCCAGCTTCCAAGGTACATCAAATAAAACCGTCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGCGGATGAATCTACTCCCAATACTCCTAGCGCGACATCATCATTGACATCTGACACACGAACCAATCTATCAGTTTATCAGGAATACTTTGAACGACCATTTTTAACTGAAACTGAACGATATTACCGATTGGAAAGTGCTCAATTTTTGCAGTCAAACACAGTTCCTGAATACCTTCAAAAAGTGGAAACACGATTAAATGAAGAACGTATTCGTGTTCAAACTTATCTACATATAAGTACACTTCCCAAATTAATTAGATCTTGTGAACATTATTTAATTGGTGAACATATTGATCGGTTAACATCTGTCTTCTCGGATCTTTTCAATGAAGATAGAGAGGAAGATATATGGCGAATGTATCGCTTAGTTGGTCATTTTCCTAGTGGAATACGTGTTCTTGTCTCTGTCATGGAAGATCATGTTGCTGATAAAGGATGGGAAGCTATCCGTCAAGTAGCTGAAGCCGCTTTAAATGATCCCAAATTGTATATTGATACAATATTAAAAGTTCATCAAAAACATTATAATCTTGTATTATCCGCTTTTGCTTGGGATCCTGCATTTTCACGTGCCTTAGACAAGGATGCGAA]

[+] EMBL CD155794             [AATTTGACTAACCATTCGTTCAAAATCAGCATAGTGATTCATCATAATTCTTTTTGTTGGAAGTGTTCAGTTATCCAAATTATGTCTTATAATCCTTATCTTTTCACTTAATTTGACGTATTTTTAAATATTGTGCGTTTTTCTATTAGGAATCCAGCTTCCAAGGTACATCAAATAAAACCGTCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGCGGATGAATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AI975971             [                                                                                                                                                                         ATCAAATAAAACCGCCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGCGGATGAATCTACTCCCAATACTCCTAGCGCGACATCATCATTGACATCTGACACACGAACCAATCTATCAGTTTATCAGGAATACTTTGAACGACCATTTTTAACTGAAACTGAACGATATTACCGATTGGAAAGTGCTCAATTTTTGCAGTCAAACACAGTTCCTGAATACCTTCAAAAAGTGGAAACACGATTAAATGAAGAACGTATTCGTGTTCAAACTTATCTACATATAAGTACACTTCCCAAATTAATTAGATCTTGTGAACATTATTTAATTGGTGAACATATTGATCGGTTAACATCTGTCTTCTCGGATCTTTTCAATGAAGATAGAGAGGAAGATATATGGCGAATGTATCGCTTAGTTGGTCATTTTCCTAGTGGAATACGTGTTCTTGTCTCTGACATGGAAGATCATGTTGCTGATAAAGGATGGGAAGCTATCCGTCAAGTAGCTGAAGCCGCTTTAAATGA                                                                                                                  ]
[+] EMBL CD192208             [                                                                                                                                                                                                                                                                            ATCTGACACACGAACCAATCTATCAGTTTATCAGGAATACTTTGAACGACCATTTTTAACTGAAACTGAACGATATTACCGATTGGAAAGTGCTCAATTTTTGCAGTCAAACACAGTTCCTGAATACCTTCAAAAAGTGGAAACACGATTAAATGAAGAACGTATTCGTGTTCAAACTTATCTACATATAAGTACACTTCCCAAATTAATTAGATCTTGTGAACATTATTTAATTGGTGAACATATTGATCGGTTAACATCTGTCTTCTCTGATCTTTTCAATGAAGATAGAGAGGAAGATATATGGCGAATGTATCGCTTAGTTGGTCATTTTCCTAGTGGAATACGTGTTCTTGTCTCTGTCATGGAAGATCATGTTGCTGATAAAGGATGGGAAGCTATCCGTCAAGTAGCTGAAGCCGCTTTAAATGATCCCAAATTGTATATTGATACAATATTAAAAGTTCATCANAAACATTATAATCTTGTATTATCCGCTTTTGCTTGGGATCCTGCATTTTCACGTGCCTTAGACAAGGATGCGAA]
[+] EMBL CD192405             [                                                                                                                                                                                                                                                                            ATCTGACACACGAACCAATCTATCAGTTTATCAGGAATACTTTGAACGACCATTTTTAACTGAAACTGAACGATATTACCGATTGGAAAGTGCTCAATTTTTGCAGTCAAGCACAGTTCCTGAATACCTTCAAAAAGTGGAAACACGATTAAATGAAGAACGTATTCGTGTTCAAACTTATCTACATATAAGTACACTTCCCAAATTAATTAGATCTTGTGAACATTATTTAATTGGTGAACATATTGATCGGTTAACATCTGTCTTCTCGGATCTTTTCAATGAAGATAGAGAGGAAGATATATGGCGAATGTATCGCTTAGTTGGTCATTTTCCTAGTGGAATACGTGTTCTTATCTCTGTCATGGAAGATCATGTTGCTGATAAAGGATGGGAAGCTATCCGTCAAGTAGCTGAAGCCGCTTTAAATGATCCCAAATTGTATATTGATACAATATTAAAAGTTCATCAAAAACATTATAATCTTGTATTATCCGCTTTTGCTTGAGATCCTGCATTTTC                        ]
[-] EMBL CD115574             [                                                                                                                                                                                                                                                                                                                                                                             TTTNTGCAGTCAAACACAGTTCNTGAATACCTTCAAAAAGTGGAAACACGATTAAATGAAGAACGTATTCGTGTTCAAACTTATCTACATATAAGTACACTTCCCAAATTAATTAGATCTTGTGAACATTATTTAATTGGTGAACATATTGATCGGTTAACATCTGTCTTCTCTGATCTTTTCAATGAAGATAGAGAGGAAGATATATGGCGAATGTATCGCTTAGTTGGTCATTTTCCTAGTGGAATACGTGTTCTTGTCTCTGTCATGGAAGATCATGTTGCTGATAAAGGATGGGAAGCTATCCGTCAAGTAGCTGAAGCCGCTTTAAATGATCCCAAATTGTATATTGATACAATATTAAAAGTTCATCAAAAACATTATAATCTTGTATTATCCGCTTTTGCTTGGGATCCTGCATTTTCACGTGCCTTAGACA          ]




>consensus_8051#0
AATTTGACTAACCATTCGTTCAAAATCAGCATAGTGATTCATCATAATTCTTTTTGTTGG
AAGTGTTCAGTTATCCAAATTATGTCTTATAATCCTTATCTTTTCACTTAATTTGACGTA
TTTTTAAATATTGTGCGTTTTTCTATTAGGAATCCAGCTTCCAAGGTACATCAAATAAAA
CCGTCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGCGGATGAATCTACTCCCA
ATACTCCTAGCGCGACATCATCATTGACATCTGACACACGAACCAATCTATCAGTTTATC
AGGAATACTTTGAACGACCATTTTTAACTGAAACTGAACGATATTACCGATTGGAAAGTG
CTCAATTTTTGCAGTCAAACACAGTTCCTGAATACCTTCAAAAAGTGGAAACACGATTAA
ATGAAGAACGTATTCGTGTTCAAACTTATCTACATATAAGTACACTTCCCAAATTAATTA
GATCTTGTGAACATTATTTAATTGGTGAACATATTGATCGGTTAACATCTGTCTTCTCGG
ATCTTTTCAATGAAGATAGAGAGGAAGATATATGGCGAATGTATCGCTTAGTTGGTCATT
TTCCTAGTGGAATACGTGTTCTTGTCTCTGTCATGGAAGATCATGTTGCTGATAAAGGAT
GGGAAGCTATCCGTCAAGTAGCTGAAGCCGCTTTAAATGATCCCAAATTGTATATTGATA
CAATATTAAAAGTTCATCAAAAACATTATAATCTTGTATTATCCGCTTTTGCTTGGGATC
CTGCATTTTCACGTGCCTTAGACAAGGATGCGAA

consensusID : consensus_8051#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence

                              [TACTACATCCCCTAGCGAACCCTTGCCATATCTAATGAAACCTTTTAAATCTAATTTTCCCCCGAAACCTAGTGGTTCTACCGTAAAACCAAATAAGTCTGAAGTGGAATCCAGCTTCCAAGGTACATCAAATAAAACCGTCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGCGGATGAATCTACTCCCAATACTCCTAGTGCGACATCATCATTGACATCTGANCACACGAACCATCTATCAGTTTATCAG]

[+] EMBL CD191818             [TACTACATCCCCTAGCGAACCCTTGCCATATCTAATGAAACCTTTTAAATCTAATTTTCCCCCGAAACCTAGTGGTTCTACCGTAAAACCAAATAAGTCTGAAGTGGAATCCAGCTTCCAAGGTACATCAAATAAAACCGTCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGCGGATGAATCTACTCCCAATACTCCTAGTGCGACATCATCATTGACATCTGANCACACGAACCATCTATCAGTTTATCAG]




>consensus_8051#1
TACTACATCCCCTAGCGAACCCTTGCCATATCTAATGAAACCTTTTAAATCTAATTTTCC
CCCGAAACCTAGTGGTTCTACCGTAAAACCAAATAAGTCTGAAGTGGAATCCAGCTTCCA
AGGTACATCAAATAAAACCGTCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGC
GGATGAATCTACTCCCAATACTCCTAGTGCGACATCATCATTGACATCTGANCACACGAA
CCATCTATCAGTTTATCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8051#0      AATTTGACTAACCATTCGTTCAAAATCAGCATAGTGATTCATCATAATTCTTTTTGTTGG 60
consensus_8051#1      --------------------------------------------TACTACATCCCCTAGC 16
                                                                  ** * * *    * * 

consensus_8051#0      AAGTGTTCAGTTATCCAAATTATGTCTTATAATCCTTATCTTTTCACTTAATTTGACGTA 120
consensus_8051#1      GAACCCTTGCCATATCTAATGAAACCTTTTAAATCTAATTTTCCCCCGAAACCTAGTGGT 76
                       *    *        * *** *   *** ***  ** ** **  * *  **  *   *  

consensus_8051#0      TTTTTA--AATATTGTGCGTTTTTCTATTAGGAATCCAGCTTCCAAGGTACATCAAATAA 178
consensus_8051#1      TCTACCGTAAAACCAAATAAGTCTGAAGT-GGAATCCAGCTTCCAAGGTACATCAAATAA 135
                      * *     ** *         * *  * * ******************************

consensus_8051#0      AACCGTCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGCGGATGAATCTACTCC 238
consensus_8051#1      AACCGTCCCGAATTTCCGAGGTCCACTTCATCCCGGAGATCCAGCGGATGAATCTACTCC 195
                      ************************************************************

consensus_8051#0      CAATACTCCTAGCGCGACATCATCATTGACATCTGAC-ACACGAACCAATCTATCAGTTT 297
consensus_8051#1      CAATACTCCTAGTGCGACATCATCATTGACATCTGANCACACGAACCA-TCTATCAGTTT 254
                      ************ ***********************  ********** ***********

consensus_8051#0      ATCAGGAATACTTTGAACGACCATTTTTAACTGAAACTGAACGATATTACCGATTGGAAA 357
consensus_8051#1      ATCAG------------------------------------------------------- 259
                      *****                                                       

consensus_8051#0      GTGCTCAATTTTTGCAGTCAAACACAGTTCCTGAATACCTTCAAAAAGTGGAAACACGAT 417
consensus_8051#1      ------------------------------------------------------------
                                                                                  

consensus_8051#0      TAAATGAAGAACGTATTCGTGTTCAAACTTATCTACATATAAGTACACTTCCCAAATTAA 477
consensus_8051#1      ------------------------------------------------------------
                                                                                  

consensus_8051#0      TTAGATCTTGTGAACATTATTTAATTGGTGAACATATTGATCGGTTAACATCTGTCTTCT 537
consensus_8051#1      ------------------------------------------------------------
                                                                                  

consensus_8051#0      CGGATCTTTTCAATGAAGATAGAGAGGAAGATATATGGCGAATGTATCGCTTAGTTGGTC 597
consensus_8051#1      ------------------------------------------------------------
                                                                                  

consensus_8051#0      ATTTTCCTAGTGGAATACGTGTTCTTGTCTCTGTCATGGAAGATCATGTTGCTGATAAAG 657
consensus_8051#1      ------------------------------------------------------------
                                                                                  

consensus_8051#0      GATGGGAAGCTATCCGTCAAGTAGCTGAAGCCGCTTTAAATGATCCCAAATTGTATATTG 717
consensus_8051#1      ------------------------------------------------------------
                                                                                  

consensus_8051#0      ATACAATATTAAAAGTTCATCAAAAACATTATAATCTTGTATTATCCGCTTTTGCTTGGG 777
consensus_8051#1      ------------------------------------------------------------
                                                                                  

consensus_8051#0      ATCCTGCATTTTCACGTGCCTTAGACAAGGATGCGAA 814
consensus_8051#1      -------------------------------------