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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8052#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 591 fasta sequence
[ACAGGAGGAGCATAGGCCGCTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTTTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTATGTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTTTTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATCTATTCCTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCCTCGTCATTGACTGGTCTCTGTGGTTGACTATATTTCCCTGCTAGATTCCTCGTTATATCGTACAGTTGTCTGATATTTCCTTCTGCCACAGCTTCTTCCGCCGTCGCTGCTAGTTCTCCCATGTATTCCTCCGGT]
[+] EMBL CD086007 [ACAGGAGGAGCATAGGCCGCTCATTGGTATTCTCTATCTAACTCTGTCCTGGACAATGCTTTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTATGTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTTTTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGCCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATCTATTCCTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCCTCGTCATTGACTGGTCTCTGTGGTTGACTATATTTCCCTGCTAGATTCCTCGTTATATCGTACAGTTGTCTGATATTTCCTTCTGCCACAGCTTCTTCCGCCGTCGCTGCTAGTTC ]
[-] EMBL CD086236 [ CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTTTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTCCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTATGTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTTTTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATCTATTCCTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCCTCGTCATTGACTGGTCTCTGTGGTTGACTATATTTCCCTGCTAGATTCCTCGTTATATCGTACAGTTGTCTGATATTTCCTTCTGCCACAGCTTCTTCCGCCGTCGCTGCTAGTTCTCCCATGTATTCCTCCGGT]
[-] EMBL CD086224 [ CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTTTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTATGTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCATGATTTTTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTGCA ]
[-] EMBL CD086001 [ CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTTTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTATGTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTTTTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACA ]
[-] EMBL CD092576 [ GAAGGTCTGTAGATTTTGCTCCAATATCCAGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATATATTCCTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCATCGTCATTGACTGGTCTCTGTGGTTGACTATATTTCCCTGCTAGATTCCTCGTTATATCGCACAGTTGTGTGATATTTCCTTCTGCCACAG ]
consensusID : consensus_8052#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 218 fasta sequence
[CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTCTCAGGCTCTTTCTAGACCCTATTTATCCTTCTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAAGTTCAATGTCGGCCAG]
[-] EMBL CD086143 [CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCTCTCAGGCTCTTTCTAGACCCTATTTATCCTTCTTATATCTGCGTCCAATCCTCAAAACGGTATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTTCTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAAGTTCAATGTCGGCCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8052#0 ACAGGAGGAGCATAGGCCGCTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCT 60
consensus_8052#1 -------------------CTCATTAGTATTCTCTATCTAACTCTGTCCTGGACAATGCT 41
*****************************************
consensus_8052#0 TTCAGGCTCTTTCTAGACCCTATTTATCCTTTTTATATCTGCGTCCAATCCTCAAAACGG 120
consensus_8052#1 CTCAGGCTCTTTCTAGACCCTATTTATCCTTCTTATATCTGCGTCCAATCCTCAAAACGG 101
****************************** ****************************
consensus_8052#0 TATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTT 180
consensus_8052#1 TATGTTCTTGGGCCTTCCTCTTTTCCGTTTCCATTGCCCTGTGATGCAGTTTGATGATTT 161
************************************************************
consensus_8052#0 CTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAATTTCCTCTTCAGCTAGTAT 240
consensus_8052#1 CTTTAATGTATATCCTATCCACTCCCGGATTCCTTTCTTAAGTTCAATGTCGGCCAG--- 218
***************************************** *** ** ** **
consensus_8052#0 GTTGCCAGGTTCCGCTGCTTTCCCACTCTTGATTTGTCTAATGACCGGTCATCCTGATTT 300
consensus_8052#1 ------------------------------------------------------------
consensus_8052#0 TTTTCGACTGTTAATAGAGTAACATCTATGGGAAGGTCTGTAGATTTTGCTCCAATATCC 360
consensus_8052#1 ------------------------------------------------------------
consensus_8052#0 AGTAGATTCAATGGAGCAGGTCCATCCAAGAGTTCCTTAAAGTGTTACACTCATCTATTC 420
consensus_8052#1 ------------------------------------------------------------
consensus_8052#0 CTCTGTCCTTGAGTTTCAGTGATCGGCTTGCCTTCCTCGTCATTGACTGGTCTCTGTGGT 480
consensus_8052#1 ------------------------------------------------------------
consensus_8052#0 TGACTATATTTCCCTGCTAGATTCCTCGTTATATCGTACAGTTGTCTGATATTTCCTTCT 540
consensus_8052#1 ------------------------------------------------------------
consensus_8052#0 GCCACAGCTTCTTCCGCCGTCGCTGCTAGTTCTCCCATGTATTCCTCCGGT 591
consensus_8052#1 ---------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||