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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8058#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1073 fasta sequence
[AGCGCCGACCATTAATGTACCTAAAGCAGTGATTTCACCTGTAAAGTCCCCCAAAAAAGGTCGCCGTCTGAAAAAACGTCTGGAAGTTTCTGAGACAAATTCGGAGTCACATCAACAAATTACTCCTTCTAGTCATTATAAAACTTTTGAAAATGACCTTAATCCTGGCCAATGTCTTTCACTACAAGCCTCCAGTCCTTACATACCAACACACTTTCCAAGCATTCGATGCCAAGCATTTTACTACGCTATTCAGGAAAAATTATTCTCTTCTTTGTCCCAAGAAAAATTACTTCATATTGATAACGAACATTTACTAGCTGTGAACTCAGATTTGGATGATAAGGTTGACGCAGCATTGAGAGCAGAAACTTTGTTCAAACTATGGTCCTTACATAGCGCCTATTATTCTCTTTCCTCCATTATATTCTGCAAGGCAGTGTGTTTAATGGATTTACTGGTTGCTAAAGTCAAAGTTAAGCCGAAGTACGCAATGTGCGTGGCCGCTGCATGCTACTATATCACCTCCAAGTTCGAGAGATCATCCGACCACGTTTCACCCACACCCGAAAGCCTTGTAACGCTATCACGATGTGGCGGCACAGCTGCTGATCTGACGCGAATGGTGGAAATTATCCTTACAAAGTTGGGACCTTCCAGCGTTGCTGCTATAGGTGCATGCTCGGCTACAGCTATTGATTTCCTGTCCAGTTTCTCATCGTTCGGCATTCCGCTTGTGTCTTATCAGAATAAATCTGGAAGTCNAAACACTTGGTTGCCTGTCCCTATTTCTATTTGTCGTCAGATCGAAATCGCTCTAGTCTCCTCAGAAGTATCATGCTTTCGTCCTTCGTGCCTAGCACTGGCCTTGATTAATCATCTTTGTTTTAATTCAGCTGTGGGGTCACTGGGTTCAGTTGACGATTGGCTGCAGTTTCATACGTCTGACCTCTATAACTTGTCACTTATATGCAACATTTCTTGGACTGATGTTATTGCATGTTCTTCCACATTAAAGGAAGCACTTACCAAAACATCGGGATCCTACACAGTTCAGGATTACCCTTCATCCC]
[+] EMBL CD125105 [AGCGCCGACCATTAATGTACCTAAAGCAGTGATTTCACCTGTAAAGTCCCCCAAAAAAGGTCGCCGTCTGAAAAAACGTCTGGAAGTTTCTGAGACAAATTCGGAGTCACATCAACAAATTACTCCTTCTAGTCATTATAAAACTTTTGAAAATGACCTTAATCCTGGCCAATGTCTTTCACTACAAGCCTCCAGTCCTTACATACCAACACACTTTCCAAGCATTCGATGCCAAGCATTTTACTACGCTATTCAGGAAAAATTATTCTCTTCTTTGTCCCAAGAAAAATTACTTCATATTGATAACGAACATTTACTAGCTGTGAACTCAGATTTGGATGATCAGGTTGAC ]
[+] EMBL CD125071 [AGCGCCGACCATTAATGTACCTAAAGCAGTGATTTCACCTGTAAAGTCCCCCAAAAAAGGTCGCCGTCTGAAAAAACGTCTGGAAGTTTCTGAGACAAATTCGGAGTCACATCAACAAATTACTCCTTCTAGTCATTATAAAACTTTTGAAAATGACCTTAATCCTGGCCAATGTCTTTCACTACAAGCCTCCAGTCCTTACATACCAACACACTTTCCAAGCATTCGATGCCAAGCATTTTACTACGCTATTCAGGAAAAATTATTCTCTTCTTTGTCCCAAGAAAAATTACTTCATATTGATAACGAACATTTACTAGCTGTGAACTCAGATTTGGATGATAAGGTTGAC ]
[+] EMBL CD062094 [ TTTCAAGCATTCGATGCCAAGCATTTTACTACGCTATTCAGGAAAAATTATTCTCTTCTTTGTCCCAAGAAAAATTACCTCATATTGATAACGAACATTTACTAGCTGTGAACTCAGATTTGGATGATAAGGTTGACGCAGCATTGAGAGCAGAAACTTTGTTCAAACTATGGTCCTTACATAGCGCCTATTATTCTCTTTCCTCCATTATATTCTGCAAGGCAGTGTGTTTAATGGATTTACTGGTTGCTAAAGTCAAAGTTAAGCCGAAGTACGCAATGTGCGTGGCCGCTGCATGCTACTATATCACCTCCAAGTTCGAGAGATCATCCGACCACGTTT ]
[+] EMBL CD184995 [ TTTGTTCAAACTATGGTCCTTACATAGCGCCTATTATTCTCTTTCCTCCATTATATTCTGCAAGGCAGTGTGTTTAATGGATTTACTGGTTGCTAAAGTCAAAGTTAAGCCGAAGTACGCAATGTGCGTGGCCGCTGCATGCTACTATATCACCTCCAAGTTCGAGAGATCATCCGACCACGTTTCACCCACACCCGAAAGCCTTGTAACGCTATCACGATGTGGCGGCACAGCTGCTGATCTGACGCGAATGGTGGAAATTATCCTTACAAAGTTGGGACCTTCCAGCGTTGCTGCTATAGGTGCATGCTCGGCTACAGCTATTGATTTCCTGTCCAGTTTCTCATCGTTCGGCATTCCGCTTGTGTCTTATCAGAATAAATCTGGAAGTCNAAACACTTGGTTGCCTGTCCCTA ]
[-] EMBL CD125562 [ TGCTCGGCTACAGCTATTGATTTCCTGTCCATTTTCTCATCGTTCGGCATTCCGTTTGTGTCTTATCAGAATAAATCTGGAAGTCAAAACACTTGGTTGCCTGTCCCTATTTCTATTTGTCGTCAGATCGAAATCGCTCTAGTCTCCTCAGAAGTATCATGCTTTCGTCCTTCGTGCCTAGCACTGGCCTTGATTAATCATCTTTGTTTTAATTCAGCTGTGGGGTCACTGGGTTCAGTTGACGATTGGCTGCAGTTTCATACGTCTGACCTCTATAACTTGTCACTTATATGCAACATTTCTTGGACTGATGTTATTGCATGTTCTTCCACATTAAAGGAAGCACTTACCAAAACATCGGGATCCTACACAGTTCAGGATTACCCTTCATCCC]
consensusID : consensus_8058#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 727 fasta sequence
[CCCTCGGGCCAAAAATTCGGCACGAGGTTTGTTTTAATTCAGCTGTGGGGTCACTGGGTTCAGTTGACGATTGGCTGCAGTTTCATACGTCTGACCTCTATAACTTGTCACTTATATGCAACATTTCTTGGACTGATGTTATTGCATGTTCTTCCACATTAAAGGAAGCACTTACCAAAACATCGGGATCCTACACAGTTCAGGATTACCCTTCATCCCGTCTATTAGGCAGCTCACCACCACTTGTGTGGACTTTATCAAGGCGCACACAACGCAGCATTTCTACATCTTCTCCTCCAGCTCTTTCAACTATCACAGAGATAGATGAAGAGCTGGTTCATTTAAATGATATTTTTTCGAACATGGATTTGGGTTTATAAAACTTGGACGAGGCATATTCAAGTCTTAACGTTTTATTATCGTTTTATTGAAATATCCTCCCTTCTCATTATTTTTCAGCTTTTATAATCCTAATATAAATTTTGATTATTAGACCAATCTGTGATTGGGAAATCCAAGGGAAAAAAAAACTTTTTAAACTTACTGTGAAAAAAACGAAAGATAGAAGTTTTCATTCCTGTTATCATTTGTTATTGTTGTTTCTCTGAACTATTTCCCTCTCCTCNATTTTAATCAGTTGTGTACAAACTTCAGAATTATTTGTTTTTTTAGAGAAAAAAAATTAACAATCAGTTTACTTTGTTAGTTAATCAGCAGCAAAAACTAT]
[+] EMBL CD081827 [CCCTCGGGCCAAAAATTCGGCACGAGGTTTGTTTTAATTCAGCTGTGGGGTCACTGGGTTCAGTTGACGATTGGCTGCAGTTTCATACGTCTGACCTCTATAACTTGTCACTTATATGCAACATTTCTTGGACTGATGTTATTGCATGTTCTTCCACATTAAAGGAAGCACTTACCAAAACATCGGGATCCTACACAGTTCAGGATTACCCTTCATCCCGTCTATTAGGCAGCTCACCACCACTTGTGTGGACTTTATCAAGGCGCACACAACGCAGCATTTCTACATCTTCTCCTCCAGCTCTTTCAACTATCACAGAGATAGATGAAGAGCTGGTTCATTTAAATGATATTTTTTCGAACATGGATTTGGGTTTATAAAACTTGGACGAGGCATATTCAAGTCTTAACGTTTTATTATCGTTTTATTGAAATATCCTCCCTTCTCATTATTTTTCAGCTTTTATAATCCTAATATAAATTTTGATTATTAGACCAATCTGTGATTGGGAAATCCAAGGGAAAAAAAAACTTTTTAAACTTACTGTGAAAAAAACGAAAGATAGAAGTTTTCATTCCTGTTATCATTTGTTATTGTTGTTTCTCTGAACTATTTCCCTCTCCTCNATTTTAATCAGTTGTGTACAAACTTCAGAATTATTTGTTTTTTTAGAGAAAAAAAATTAACAATCAGTTTACTTTGTTAGTTAATCAGCAGCAAAAACTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8058#0 AGCGCCGACCATTAATGTACCTAAAGCAGTGATTTCACCTGTAAAGTCCCCCAAAAAAGG 60
consensus_8058#1 ------------------------------------------------------------
consensus_8058#0 TCGCCGTCTGAAAAAACGTCTGGAAGTTTCTGAGACAAATTCGGAGTCACATCAACAAAT 120
consensus_8058#1 ------------------------------------------------------------
consensus_8058#0 TACTCCTTCTAGTCATTATAAAACTTTTGAAAATGACCTTAATCCTGGCCAATGTCTTTC 180
consensus_8058#1 ------------------------------------------------------------
consensus_8058#0 ACTACAAGCCTCCAGTCCTTACATACCA-ACACACTTTCCAAGCATTCGATGCCAAGCAT 239
consensus_8058#1 --------CCCTCGGGCCAAAAATTCGGCACGAGGTTTGTTTTAATTCAGCTGTGGGG-- 50
** * * ** * ** * ** *** **** *
consensus_8058#0 TTTACTACGCT--ATTCAGGAAAAATTATTCTCTTCTTTGTCCCAAGAAAAATTACTTCA 297
consensus_8058#1 -TCACTGGGTTCAGTTGACGATTGGCTGCAGTTTCATACGTCT-GACCTCTATAACTTGT 108
* *** * * ** * ** * * * * *** * ** ****
consensus_8058#0 TATTGATAACGAACATTTACTAGCTGTGAACTCAGATTTGGATGATAAGGTTGACGCAGC 357
consensus_8058#1 CACTTATATGCAACATTTCTTGG------ACTGATGTT---ATTGCATGTTC--TTCCAC 157
* * *** ******* * * *** * ** ** * * * * *
consensus_8058#0 ATTGAGAGCAGAAACTTTGTTCAAAC-TATGGTCCTTACATAGCGCCTATTATTCTCTTT 416
consensus_8058#1 ATTAAAGGAAGCA--CTTACCAAAACATCGGGATCCTACACAGTTC--AGGATTACCCTT 213
*** * * ** * ** **** * ** * **** ** * * *** * **
consensus_8058#0 CCTCCATTATATTCTGCAAGGCAGTGTGTTTAATGGATTTACTGGTTGCTAAAGTCAAAG 476
consensus_8058#1 CATCCCGTCTATTAGGCAGCTCACCACCACT--TGTGTGGACT--TTATCAAGGCGCACA 269
* *** * **** *** ** * ** * *** ** ** * *
consensus_8058#0 TTAAGCCGAAGTACGCAATGTGCGTGGCCGCTGCATGCTACTATATCACCTCCAAGTTCG 536
consensus_8058#1 CAACGCAGCATTTCTACATCTTCTCCTCCAGCTCTTTCAACTATCACAGAGATAGATGAA 329
* ** * * * * ** * * ** * * * ***** ** * *
consensus_8058#0 AGA---GATCATCCGACCACGTTTCACCCACACCCGAA---AGCCTTGTAACGCTATCAC 590
consensus_8058#1 GAGCTGGTTCATTTAAATGATATTTTTTCGAACATGGATTTGGGTTTATAAAACTTGGAC 389
* **** * ** * ** * * * ** *** ** **
consensus_8058#0 GATGTGGCGGCACAGCTGCTGATCTGACG--CGAATGGTGGAAATTATCCTTACAAAGTT 648
consensus_8058#1 GAGGCATATTCAAGTCTTAACGTTTTATTATCGTTTTATTGAAAT-ATCCTCCCTTC-TC 447
** * ** ** * * * ** * * ***** ***** * *
consensus_8058#0 GGGACCTTCCAGCGTTGCTGCTATAGGTGCATGCTCGGCTACAGCTATTGATTTCCTGTC 708
consensus_8058#1 ATTATTTTTCAGCTTTTATAATCCTAATATAAATTTTGATTATTAGACCAATCTGTGATT 507
* ** **** ** * * * * * * * * ** * *
consensus_8058#0 CAGTTTCTCATCGTTCGGCATTCCGCTTGTGTCTTATCAGAATAAATCTGGAAGTCNAAA 768
consensus_8058#1 GGGAAATCCAAGGGAAAAAAAAACTTTTTAAACTTACTGTGAAAAAAACGAAAGATAGAA 567
* ** * * * ** **** * *** * *** **
consensus_8058#0 CACTTGGTTGCCTGTCCCTATTTCTATTTGTCGTCAGATCGAAATCGCTCTAGTCTCCTC 828
consensus_8058#1 GTTTTCATT-CCTGTTATCATTTGTTATTGTTGTTTC-TCTGAACTATTTCCCTCTCCTC 625
** ** ***** **** * **** ** ** ** * *******
consensus_8058#0 AGAAGTATCATGCTTTCGTCCTTCGTGCCTAGCACTGGCCTTGATTAATCATCTTTGTTT 888
consensus_8058#1 NA----------TTTTAATCAGTTGTGTACAAACTTCAGAATTATTTGTTTTTTTAGAGA 675
*** ** * *** * * * *** * * ** *
consensus_8058#0 TAAT---TCAGCTGTGGGGTCACTGGGTTCAGTTGACGATTGGCTGCAGTTTCATACGTC 945
consensus_8058#1 AAAAAAATTAACAATCAGTTTACTTTGTT-AGTTAATCAGCAGCAAAAACTAT------- 727
** * * * * * * *** *** **** * * ** * *
consensus_8058#0 TGACCTCTATAACTTGTCACTTATATGCAACATTTCTTGGACTGATGTTATTGCATGTTC 1005
consensus_8058#1 ------------------------------------------------------------
consensus_8058#0 TTCCACATTAAAGGAAGCACTTACCAAAACATCGGGATCCTACACAGTTCAGGATTACCC 1065
consensus_8058#1 ------------------------------------------------------------
consensus_8058#0 TTCATCCC 1073
consensus_8058#1 --------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||