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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 669 fasta sequence
[ATTTCTCTCAAAACATCAGTTTGTGCGAGAGAGTAGGTATACTTTGAACCCGACTGCTGTAAGCACCCAGGCTAAAATAATCTATTGGAAGTGTCGCCCAAACTAATGGGCATGAATAACTTAATTGTCTTCAGTGTGAATGAGTTTGATATATTATAACACTGAAAACATTTACTCTACAAGTGTGGAATCACTTGAAAAATGTGATGGTCCTATGTATAAAACTAACAAAATCTATTAGTCAATCAATAAAATAAATGAGGTGACACCAGTTATCGCCATTTAATATTTGATTAACTCACTGTTACATCTAATAATGAAAATTTGATTCTTATAAAGTGTAACACTGAGATGTGACACAATATGGAGCAATCGACTTTAATGACATAATTAACTAGAGCAATACAGGCAATCAATAATATATAAATATTATATCATACACTTTAATGTAGCTGACATTAGAAAGTGCATTGGCCTCATGACCTCCGAAGGAATTCGGCTTTCATCATGAGGCGTCATATTTATTCCTTCAACTCCCAGGGCAGAGTTTAAATGGTTTGAATTATTTTTTCTGGTTAGCTTTTTTTTAGTGAGTTGGTTTTCTACGGGATGGGGTTTCTAACCTCATGCCCAGTCCCCATCCTTTATCACGGCTTGGGATTGGCAGTA]
[+] EMBL CD084453 [ATTTCTCTCAAAACATCAGTTTGTGCGAGAGAGTAGGTATACTTTGAACCCGACTGCTGTAAGCACCCAGGCTAAAATAATCTATTGGAAGTGTCGCCCAAACTAATGGGCATGAATAACTTAATTGTCTTCAGTGTGAATGAGTTTGATATATTATAACACTGAAAACATTTACTCTACAAGTGTGGAATCACTTGAAAAATGTGATGGTCCTATGTATAAAACTAACAAAATCTATTAGTCAATCAATAAAATAAATGAGGTGACACCAGTTATCGCCATTTAATATTTGATTAACTCACTGTTACATCTAATAATGAAAATTTGATT ]
[-] EMBL CD084482 [ CAGTGTGAATGAGTTTGATATATTATAACACTGAAAACATTTACTCTACAAGTGTGGAATCACTTGAAAAATGTGATGGTCCTATGTATAAAACTAACAAAATCTATTAGTCAATCAATAAAATAAATGAGGTGACACCAGTTATCGCCATTTAATATTTGATTAACTCACTGTTACATCTAATAATGATAATTTGATTCTTATAAAGTGTAACACTGAGATGTGACACAATATGGAGCAATCGACTTTAATGACATAATTAACTAGAGCAATACAGGCAATCAATAATATATAAATATTATATCATACACTTTAATGTAGCTGACATTAGAAAGTGCATTGGCCTCATGACCTCCGAAGGAATTCGGCTTTCATCATGAGGCGTCATATTTATTCCTTCAACTCCCAGGGCAGAGTTTAAATGGTTTGAATTATTTTTTCTGGTTAGCTTTTTTTTAGTGAGTTGGTTTTCTACGGGATGGGGTTTCTAACCTCATGCCCAGTCCCCATCCTTTATCACGGCTTGGGATTGGCAGTA]
consensusID : consensus_8068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[ACATCATCAATGTAATAGCAACATAATCATAATAAATGCACAATATTCATATAAGGATAGAGATATAACACATTATAAGGTTAAATAAATAAGTAGTCTATAATGATGAATCAGTAGTTTATCATTAAACTTCAATTAAAACCGATTGATTGACATAGCGCAATAATGAAGGTTATTCAATCTTCAAGAATATAGATTTAAATAGAGGTCAATTCTTTACTTGTTTGAATGAAGCACAAATGAATTCATTACTTCAAATGATAATAATAATAATAATAATAATAATAGTAGCTTTAGGAAGCTCTTTGAAGCTCACTGAATTCATCATGAGGTCCCATAGACAAAATCTATGAGGTGATGTGATTCATTTTACAATCTTTTGTTTTGTTGTTGTTGTTTAAATGTTTCATCCAATAGTCATAGTTAAAGAGCTGGAACATATACTTCACACTATATGATAGGATAGGACATACATTAAGGAACTCATCAAACTGCATCACGAAGCAAGCCTTCACTTGGAATTCGGAAGGGGAAACGGAAAAGAGGAAAGTCAAAGAACGCATTACATCCGGAAATAGAAGTAGATATGAAAAGGATGAATGTTAACTCGAAAGAAGTGGAAAGGATTGCCCAG]
[+] EMBL CD074001 [ACATCATCAATGTAATAGCAACATAATCATAATAAATGCACAATATTCATATAAGGATAGAGATATAACACATTATAAGGTTAAATAAATAAGTAGTCTATAATGATGAATCAGTAGTTTATCATTAAACTTCAATTAAAACCGATTGATTGACATAGCGCAATAATGAAGGTTATTCAATCTTCAAGAATATAGATTTAAATAGAGGTCAATTCTTTACTTGTTTGAATGAAGCACAAATGAATTCATTACTTCAAATGATAATAATAATAATAATAATAATAATAGTAGCTTTAGGAAGCTCTTTGAAGCTCACTGAATTCATCATGAGGTCCCATAGACAAAATCTATGAGGTGATGTGATTCATTTTACAATCTTTTGTTTTGTTGTTGTTGTTTAAATGTTTCATCCAATAGTCATAGTTAAAGAGCTGGAACATATACTTCACACTATATGATAGGATAGGACATACATTAAGGAACTCATCAAACTGCATCACGAAGCAAGCCTTCACTTGGAATTCGGAAGGGGAAACGGAAAAGAGGAAAGTCAAAGAACGCATTACATCCGGAAATAGAAGTAGATATGAAAAGGATGAATGTTAACTCGAAAGAAGTGGAAAGGATTGCCCAG]
consensusID : consensus_8068#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[TTTCATAAACTAATGAACTGGGCCGACAGGAATTTCAGCCTTCGTTGTGATATGGATCAGGATGCGCAACGCTGGATTCGCCTGTGATGACGCCCAAGAGCAGTGTTCCTTCCATCGTTGGACGACCTCGACATCAAGGTGTGATGGCTCGCATGGGTCAGAAAGACAGCTACGTCGGTGATGAAGCACATCGAAACGTGGTATTCTCACACTGAAATCCCCATCGACACGGTATTGTGACGAACTGGGATGACATGGAGAAGATCTGGCATCACACATTCCACAATGAATTGCGTGTGCTACAAGAAGAACACCTGTCTGTTGACGAAGCTCATTGATCGAAGCCATCGTGAGAGATGACCAATCATGTTGAGCATCACAACCAGCATGTACGTCGGCATCAAGCTGTACTGTCCTGTAGATCGGGTCTAAAATGGTATTGTGTTGGACCTGGTGATGGAGTACACACCGGACGATCTAGAGGTTATCGCCACCATGTATTCGGGGTGGATTGGTGTCGTGATTAACGATCTGAGAGGTCTGAGGACGGTTAATTTCCAAAAGGGGGAGAATCGCGGAAAAAGGAACTGGTTTTGGTCTA]
[+] EMBL AI639549 [TTTCATAAACTAATGAACTGGGCCGACAGGAATTTCAGCCTTCGTTGTGATATGGATCAGGATGCGCAACGCTGGATTCGCCTGTGATGACGCCCAAGAGCAGTGTTCCTTCCATCGTTGGACGACCTCGACATCAAGGTGTGATGGCTCGCATGGGTCAGAAAGACAGCTACGTCGGTGATGAAGCACATCGAAACGTGGTATTCTCACACTGAAATCCCCATCGACACGGTATTGTGACGAACTGGGATGACATGGAGAAGATCTGGCATCACACATTCCACAATGAATTGCGTGTGCTACAAGAAGAACACCTGTCTGTTGACGAAGCTCATTGATCGAAGCCATCGTGAGAGATGACCAATCATGTTGAGCATCACAACCAGCATGTACGTCGGCATCAAGCTGTACTGTCCTGTAGATCGGGTCTAAAATGGTATTGTGTTGGACCTGGTGATGGAGTACACACCGGACGATCTAGAGGTTATCGCCACCATGTATTCGGGGTGGATTGGTGTCGTGATTAACGATCTGAGAGGTCTGAGGACGGTTAATTTCCAAAAGGGGGAGAATCGCGGAAAAAGGAACTGGTTTTGGTCTA]
consensusID : consensus_8068#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence
[CAGAGAAAGTCAATACACAAGCTGAATACACTACAGCAAAAAAGCAAGTGACGATGAGCATCAGAATCGACGAGCAGAAATACGCAGAAGAGCTAGCAACGACGGTGGAAAAAGCTGTAAGAGAAGGAAACATGAAACAACTATATGACACGACGAAGAAACTAGCAGGGAAATATGGTAAATCAGAGAGACCAGTCAAGGACAAAGAGGGCAAGCCAATCTCTGAGACTCAAGAACCGGAGCACAAATGGGTAGAATACTTTGAGGAACCCTTGAATTGATCATCTCCATTGAATTCACCGGACATTTGAACTGCAGACATAGGCCTTCCTATAGCTGTCACCCAACCAACGACAGAAGAAATCAGGATGACCATCAGATAAAACAAGTGTGGGAAGGCGGTAGGAACTGACAATATACCAGCCGAAGCACTGGAATCAGACAGAAATAACTATAAACATGCTCCACGCTCTATACAGG]
[+] EMBL CD190367 [CAGAGAAAGTCAATACACAAGCTGAATACACTACAGCAAAAAAGCAAGTGACGATGAGCATCAGAATCGACGAGCAGAAATACGCAGAAGAGCTAGCAACGACGGTGGAAAAAGCTGTAAGAGAAGGAAACATGAAACAACTATATGACACGACGAAGAAACTAGCAGGGAAATATGGTAAATCAGAGAGACCAGTCAAGGACAAAGAGGGCAAGCCAATCTCTGAGACTCAAGAACCGGAGCACAAATGGGTAGAATACTTTGAGGAACCCTTGAATTGATCATCTCCATTGAATTCACCGGACATTTGAACTGCAGACATAGGCCTTCCTATAGCTGTCACCCAACCAACGACAGAAGAAATCAGGATGACCATCAGATAAAACAAGTGTGGGAAGGCGGTAGGAACTGACAATATACCAGCCGAAGCACTGGAATCAGACAGAAATAACTATAAACATGCTCCACGCTCTATACAGG]
consensusID : consensus_8068#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence
[TTACTCTGAGAAATAGAAGCAGATATGAAAAGGATGAATGTTAACTGGAAAGAATTGGAAAGGAAGGCTCAGGACAGAGTTGGATGAAGAATTCTAATGAGCGGCCTATGCTCCTTGACGAGGGGTAATAGGCGTAAGTAATTAAGGAAGTAAAATCGCATTCATAGATGAATATATTTAAGTAGCCTGCCAGCTATGACTTTTTCGACTATCAAATTACGTTGACGGCATTGCATAGCTATTTTGAATGAGCAAGATTATGTTGGGCGTTTTTAGC]
[+] EMBL CD177775 [TTACTCTGAGAAATAGAAGCAGATATGAAAAGGATGAATGTTAACTGGAAAGAATTGGAAAGGAAGGCTCAGGACAGAGTTGGATGAAGAATTCTAATGAGCGGCCTATGCTCCTTGACGAGGGGTAATAGGCGTAAGTAATTAAGGAAGTAAAATCGCATTCATAGATGAATATATTTAAGTAGCCTGCCAGCTATGACTTTTTCGACTATCAAATTACGTTGACGGCATTGCATAGCTATTTTGAATGAGCAAGATTATGTTGGGCGTTTTTAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8068#1 ---------------------------ACATCATCAATGTA-ATAGCAACATAATCATA- 31
consensus_8068#4 -----------------------------TTACTCTGAGAA-ATAGAAGCAGATATGAA- 29
consensus_8068#3 -------------CAGAGAAAGTCAATACACAAGCTGAATACACTACAGCAAAAAAGCA- 46
consensus_8068#0 ATTTCTCTCAAAACATCAGTTTGTGCGAGAGAGTAGGTATACTTTGAACCCGACTGCTGT 60
consensus_8068#2 -----------------TTTCATAAACTAATGAACTGGGCCGACAGGAATTTCAGCCTT- 42
*
consensus_8068#1 ATAAATGCACAATATTCATATAAGGATAGAGATATAA-CACATTATAAGGTTA-AATAAA 89
consensus_8068#4 AAGGATGAATGTTAACTGGAAAGAATTGGAAAGGAAGGCTCAGGACAGAGTTG-GATGAA 88
consensus_8068#3 AGTGACGATGAGCATCAGAATCGACGAGCAGAAATACGCAGAAGAGCTAGCAACGACGGT 106
consensus_8068#0 AAGCACCCAGGCTAAAATAATCTATTGGAAGTGTCGCCCAAACTAATGGGCATGAATAAC 120
consensus_8068#2 CGTTGTGATATGGATCAGGATGCGCAACGCTGGATTCGCCTGTGATGACGCCC-AAGAGC 101
* * * * * *
consensus_8068#1 TAAGTAGTCTATAATGATGAATCAGTAGTTTATCATTAAACTTCAATTAAAACCGATTGA 149
consensus_8068#4 GAA-----TTCTAATGA-------GCGGCCTAT------GCTCC--TTGACGAGGGGTAA 128
consensus_8068#3 GGAAAAAGCTGTAAGAG------AAGGAAACATGAAACAACTATATGACACGACGAAGAA 160
consensus_8068#0 TTAATTGTCTTCAGTGT-GAATGAGTTTGATATATTATAACACTGAAAACATTTACTCTA 179
consensus_8068#2 AGTGTTCCTTCCATCGTTGGACGACCTCGACATCAAGGTGTGATGGCTCGCATGGGTCAG 161
* * **
consensus_8068#1 TTGACATAGC-------GCAATAATGAAGGTTATTCAA---TCTTCA-AGAAT--ATAGA 196
consensus_8068#4 TAGGCGTAA--------GTAATTAAGGAAGTAAAATCG---CATTCA-TAGATGAATATA 176
consensus_8068#3 ACTA-GCAGG-------GAAATATGGTAAATCAGAGAGAC-CAGTCA-AGGACAAAGAGG 210
consensus_8068#0 CAAGTGTGGA-------ATCACTTGAAAAATGTGATGGTCCTATGTATAAAACTAACAAA 232
consensus_8068#2 AAAG-ACAGCTACGTCGGTGATGAAGCACATCGAAACGTGGTATTCT-CACACTGAAATC 219
* * * * * *
consensus_8068#1 TTTAAATAGAGGTCAATTCT--TTACTTGTTTGAATGAAGCACAAATGAATTCATTACTT 254
consensus_8068#4 TTTAAGTAGCCTGCCAGCTA--TGACTTTTTCGACT--ATCA-AATTACGTTGACGGCAT 231
consensus_8068#3 GCAAGCCAATCTCTGAGACT--CAAG------AACCGGAGCACAAATGGGTAGAATACTT 262
consensus_8068#0 ATCTATTAGTCAATCAATAAAATAAATGAGGTGACACCAGTT-ATCGCCATTTAATATTT 291
consensus_8068#2 CCCATCGACACGGTATTGTGACGAACTGGGATGACATGGAGAAGATCTGGCATCACACAT 279
* * * *
consensus_8068#1 CAAATGAT-AATAAT-AATA--ATAATAATAATAATAGTAGCTTTAGGAAGCTCTTTGAA 310
consensus_8068#4 TGCATAGC-TATTTTGAATG--AGCAAGATTATGTTGGGCGTTTTTAGC----------- 277
consensus_8068#3 TGAGGAAC-CCTTGA-ATTG--ATCAT--CTCCATTGAATTCACCGGACATTTGAACTGC 316
consensus_8068#0 GATTAACT-CACTGTTACAT--CTAATAATGAAAATTTGATTCTTATAAAGTGTAAC-AC 347
consensus_8068#2 TCCACAATGAATTGCGTGTGCTACAAGAAGAACACCTGTCTGTTGACGAAGCTCATTGAT 339
*
consensus_8068#1 GCTCACTGAATTCATCATGAGGTCCCATAGACAAAATCTATGAGGTGATGTGATTCATTT 370
consensus_8068#4 ------------------------------------------------------------
consensus_8068#3 AGACATAGGCCTTCCTATAGCTGTCACCCAACCAACGACAGAAGAAATCAGGATGACCAT 376
consensus_8068#0 TGAGATGTGACACAATATGGAGCAATCGACTTTAATGACATAATTAACTAGAGCAATACA 407
consensus_8068#2 CGAAGCCATCGTGAGAGATGACCAATCATGTTGAGCATCACAACCAGCATGTACGTCGGC 399
consensus_8068#1 TACAATCTTTTGT--TTTGTTGTTGTTGTTTAAATGTTTCATCCAATAGTCATAGTTAAA 428
consensus_8068#4 ------------------------------------------------------------
consensus_8068#3 CAGATAAAACAAG--TGTGGGAAGGCGGTAGGAACTGACAATATACCAGCCGAAGCACTG 434
consensus_8068#0 GGCAATCAATAATA-TATAAATATTATATCATACACTTTAATGTAGCTGACATTAGAAAG 466
consensus_8068#2 ATCAAGCTGTACTGTCCTGTAGATCGGGTCTAAAATGGTATTGTGTTGGACCTGGTGATG 459
consensus_8068#1 GAGC-TGGAACATATACTTCACACTATATGATAGGATAGGACATACATTAAGGAACTCAT 487
consensus_8068#4 ------------------------------------------------------------
consensus_8068#3 GAAT-CAGACAGAAATAACTATAAACATGCTCCACGCTCTATACAGG------------- 480
consensus_8068#0 TGCA-TTGGCCTCATGACCTCCGAAGGAATTCGGCTTTCATCATGAGGCGTCATATTTAT 525
consensus_8068#2 GAGTACACACCGGACGATCTAGAGGTTATCGCCACCATGTATTCGGGGTGGATTGGTGTC 519
consensus_8068#1 CAAACTGCATCACGAAGCAAGCCTTCACTTGGAATTCGGAAGGGGAAACGGAAAAGAGGA 547
consensus_8068#4 ------------------------------------------------------------
consensus_8068#3 ------------------------------------------------------------
consensus_8068#0 TCCTTCAACTCCCAGGGCAGAGTTTAAATGGTTTGAATTATTTTTTCTGGTTAGCTTTTT 585
consensus_8068#2 GTGATTAACGATCTGAGAGGTCTGAGGACGGTTAATTTCCAAAAGGGGGAGAATCGCGGA 579
consensus_8068#1 AAGTCAAAGAACGCATTACATCCGGAAATAGAAGTAGATATGAAAAGGATGAATGTTAAC 607
consensus_8068#4 ------------------------------------------------------------
consensus_8068#3 ------------------------------------------------------------
consensus_8068#0 TTTAGTGAGTTGGTTTTCTACGGGATGGGGTTTCTAACCTCATGCCCAGTCCCCATCCTT 645
consensus_8068#2 AAAAGGAACTGGTTTTGGTCTA-------------------------------------- 601
consensus_8068#1 TCGAAAGAAGTGGAAAGGATTGCCCAG 634
consensus_8068#4 ---------------------------
consensus_8068#3 ---------------------------
consensus_8068#0 TATCACGGCTTGGGATTGGCAGTA--- 669
consensus_8068#2 ---------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||