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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1004 fasta sequence
[CCTTCNAGGCCATTATTCGGCACGAGGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAAGAAGCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAAAGTTATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAAGTGCATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATTTACTACAAATGCTGTATTGAGTGTAATTACAAATCAACTTATGAAAAATTGTAATCATTGCACTCTTACTAACCCACTGCATATATTTTGTACACGTTGTCGTGATAACAAGTA-TTTCTCTGC-AAGTTTTAATTNGTTG-TGCTGTGA-TAGAAAAAT-ATAGTTAA]
[+] EMBL CD081618 [CCTTCNAGGCCATTATTCGGCACGAGGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAAGAAGCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAAAGTTATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAAGTGCATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATTTACTACAAATGCTGTATTGAGTGT ATTACAAATCNACTTATGAAAAATTGTAATCATTGCACTCTTACTAACCCACTGCATATATTTTGTACACGTTGTCGTGATACCAAGTA TTTCTCTGC AAGTTTTAATTNGTTG TGCTGTGA TAGAAAAAT ATAGTT ]
[-] EMBL CD074088 [ AAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAAGAAGCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAAAGTTATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAAGTGCATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATTTACTACAAATTCTGTATTGAGTGTAATTACAAATCAACTTATGAAAAATTGTAATCATTGCACTCTTACTAACCCACTGCATATATTTTGT ACGTTGTCGTGATAACAAGTA T ]
[-] EMBL CD075441 [ AACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAAGAAGCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAAAGTTATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAAGTGCATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATTTACTACAAATGCTGTATTGAGTGTAATTACAAATCAACTTATGAAAAATTGTAATCATTGCACTCTTACTAACCCACTGCATATATTTTGTACACGTTGTCGTGATAACAAGTATTTTCTCTGCAAAGTTTTAATT GTTGTTGCTGTGATTAGAAAAATAATAGTTAA]
consensusID : consensus_8069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 718 fasta sequence
[TGGCCTCGAGAGCAGAATCGCACGAGGTTTACTCTTGTGATTTGTTGCATGAATACGTTCCCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAAATGTGTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGNGTAGCGAAG]
[+] EMBL CD083451 [TGGCCTCGAGAGCAGAATCGCACGAGGTTTACTCTTGTGATTTGTTGCATGAATACGTTCCCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAAATGTGTGTGATAAATGTCGAGATCCTAAAAATATTCATGCT ]
[+] EMBL CD077717 [ cggtccgagGTGATTTGTTGCATGAATACGTTCCCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGGTTTATTTTTGAAGAGGAAACTTCTAA ]
[+] EMBL CD079890 [ attcgGCACGAGGACGTTCCCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAACAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCATGATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGTTTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAATTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATAAAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCTGATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGCAAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTAATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGTGAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATGAGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGNGTAGCGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8069#0 ---------------------------------------------------------CCT 3
consensus_8069#1 TGGCCTCGAGAGCAGAATCGCACGAGGTTTACTCTTGTGATTTGTTGCATGAATACGTTC 60
consensus_8069#0 TCNAGGCCATTATTCGGCACGAGGGATGAACTTACAGAAGCTGAACATTTACGAATTGAA 63
consensus_8069#1 CCCATGTGAGTTGACTATTGAATGGATGAACTTACAGAAGCTGAACATTTACGAATTGAA 120
* * * * * * * *************************************
consensus_8069#0 CAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCAT 123
consensus_8069#1 CAAAATCGGAAACGTGCCTTAGAACTTAGACTTTCACAAGTTGTTGCAAATGATCGTCAT 180
************************************************************
consensus_8069#0 GATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGT 183
consensus_8069#1 GATGTTTATGCATCAGTCCCACAATCAAAACTGAATACAAAATACTTAAGTGATGGAGGT 240
************************************************************
consensus_8069#0 TTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAA 243
consensus_8069#1 TTTATTTTTGAAGAGGAAACTTCTAATCATAATTATCCTTATACAGAAAAAGATGAAGAA 300
************************************************************
consensus_8069#0 TTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATA 303
consensus_8069#1 TTTTCAGATCCAGAATTAAATGCAACTGTTAAACCTAAAAAACGCAAACAAAAGTGTATA 360
************************************************************
consensus_8069#0 AAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCT 363
consensus_8069#1 AAGCAATCAAACACTGAATCGAATCTCCTTATAACTAACTCCAATGTACCTATTCCCCCT 420
************************************************************
consensus_8069#0 GATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGC 423
consensus_8069#1 GATCAAGAAAAACCAACTTGTGATTTATGCCATAAACTGTTTGAAGAATCATTTTTACGC 480
************************************************************
consensus_8069#0 AAAACATTTGAAGTAGATGTTTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTA 483
consensus_8069#1 AAAACATTTGAAGTAAATGTGTGTGATAAATGTCGAGATCCTAAAAATATTCATGCTTTA 540
*************** **** ***************************************
consensus_8069#0 ATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGT 543
consensus_8069#1 ATTACTAAAAGTTCAGCAAAGGAACGTTATTTGCTAAATGATGTTGATTTAGATATACGT 600
************************************************************
consensus_8069#0 GAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATG 603
consensus_8069#1 GAACCGAAATTGAACTATTTGTTGAAACGTAATCCACACAATTCAAGTTGGGGAGATATG 660
************************************************************
consensus_8069#0 AGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGGGTAGCGAAGAA 663
consensus_8069#1 AGGCTGTATTTGGAAGCACAAATTGCTGAACGTGCTCTAGAAATATGGNGTAGCGAAG-- 718
************************************************ *********
consensus_8069#0 GCTTTAGAAGAAGAACGTGAAAAGCGTTTGAAACGCAATGAACAATCGAAACTTAAAAGT 723
consensus_8069#1 ------------------------------------------------------------
consensus_8069#0 TATAGTAAAAAGGTTAAAGAACTGAAACTTCAAACACGCAGTAGCTTATATATGAAAGTG 783
consensus_8069#1 ------------------------------------------------------------
consensus_8069#0 CATAAATCTCATGAACACACTTTCGGACTGGAGAAATATGATCCGAAGTCAGATATTTAC 843
consensus_8069#1 ------------------------------------------------------------
consensus_8069#0 TACAAATGCTGTATTGAGTGTAATTACAAATCAACTTATGAAAAATTGTAATCATTGCAC 903
consensus_8069#1 ------------------------------------------------------------
consensus_8069#0 TCTTACTAACCCACTGCATATATTTTGTACACGTTGTCGTGATAACAAGTATTTCTCTGC 963
consensus_8069#1 ------------------------------------------------------------
consensus_8069#0 AAGTTTTAATTNGTTGTGCTGTGATAGAAAAATATAGTTAA 1004
consensus_8069#1 -----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||