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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 945 fasta sequence
[AAAATATATTCTTAAAGAATTTTGATTTCTTAAAATGTACAGAGATCTTTGGTTTGTCACATTAAAAGTCAAATGAATAATGATTTGTTAGAGCAATTCGGTCGACAGTTACAGAGTAGCAACCAGATGTTAATTAAATTCCTAAGTCATTAAAAATTTAATTTTCTCGCTACAAAATAACTAACATATCTACATATTTGTGATTTACATTTGTCTATTTGTTTAGTGGATATCCAGCATACTCATCTCCGTCATCTTGAGGTATTCTTTCTTCTTGTAAGCATGTTTCGTGAGTAGGAATTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGGCATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGGAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCATAATATTACCGAAAACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGTTGACACACTGCTTTGGGAAATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCTCAAAAACTGACGAATCCAACCACCATGACCTACAATAAGAACATGTCCTGCATAAGTGGATATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGACGAAGAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAGGATCCAGAAGGAAGTTATGTGTTCGACNTTGCCATCTCGTGAGTACATTCTCTCCCTCGTGCCCTA]
[+] EMBL CD074799 [AAAATATATTCTTAAAGAATTTTGATTTCTTAAAATGTACAGAGATCTTTGGTTTGTCACATTAAAAGTCAAATGAATAATGATTTGTTAGAGCAATTCGGTCGACAGTTACAGAGTAGCAACCAGATGTTAATTAAATTCCTAAGTCATTAAAAATTTAATTTTCTCGCTACAAAATAACTAACATATCTACATATTTGTGATTTACATTTGTCTATTTGTTTAGTGGATATCCAGCATACTCATCTCCGTCATCTTGAGGTATTCTTTCTTCTTGTAAGCATGTTTCGTGAGTAGGAATTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGGCATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGGAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCATAATATTACCGAAAACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGTTGACACACTGCTTTGGGAAATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCTCAAAAACTGACGA ]
[+] EMBL CD075175 [AAAATATATTCTTAAAGAATTTTGATTTCTTAAAATGTACAGAGATCTTTGGTTTGTCACATTAAAAGTCAAATGAATAATGATTTGTTAGAGCAATTCGGTCGACAGTTACAGAGTAGCAACCAGATGTTAATTAAATTCCTAAGTCATTAAAAATTTAATTTTCTCGCTACAAAATAACTAACATATCTACATATTTGTGATTTACATTTGTCTATTTGTTTAGTGGATATCCAGCATACTCATCTCCGTCATCTTGAGGTATTCTTTCTTCTTGTAAGCATGTTTCGTGAGTAGGAATTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGGCATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGGAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCATAATATTACCGAAAACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGTTGACACACTGCTTTGG ]
[-] EMBL CD081343 [ AAGCATGTTTCGTGAGTAGGAATTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGGCATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGGAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCATAATATTACCGAAAACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGTTGACACACTGCTTTGGGAAATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCTCAAAAACTGACGAATCCAACCACCATGACCTACAATAAGAACATGTCCTGCATAAGTGGATATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGACGAAGAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAGGATCCAGAAGGAAGTTATGTGTTCGACNTTGCCATCTCGTGAGTACATTCTCTCCCTCGTGCCCTA]
[-] EMBL CD135454 [ GGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGGCATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGCTAAATGAATATAGGAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTCGTAATATTACCGAAAACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTCAAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATCACCGAGTTGACACACTGCTTTGGGAAATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCTCAAAAACTGACGAATCCAACCACCATGACCTAC ]
consensusID : consensus_8072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[CGCTTCCTCAATGTCGATGTGATTTTGGTGATTATTTCTTGTGATTTGTGTGGTTAGTAGATATTTTGTCTGAGTCGGTTCATTGTGCTTTCATATTATCTTTGTTTCCAGAATATGAAACAAGAAATCTTATATTTCTACTTGACGCTATTACGACAGTAAGAATCAGTCTAATAATGAACTATCTTCTAGCGGAGAAACAACTGAAAATAAAAACCAAGTGATTCAAGGTTACTTCTATCTTTTATTTAGATTTTGGCGTTTTAGGTCACTTGGATACCGNNNNNNNNNNNNNNNGACTTGAGCAAGCTAAGAATATTCGGACTCTCATTAACCAAAGCAAACCAGATATTATTATTTCAAGTGATCTAAAAAGAGCCAGATACACGGCATATGAGGTAACCGACCCGTCTGTTGTGGAACTGGAATCTCTTACTGGTCGTCCAAGATCTGAAGTTCAACAGTTCACAGAAATAAATTTCAAGAGGGGATATGAATGTGATGGCTGGCGAAACATTGGTGGAGAATGTACTCACGAGGCTCCATCAAGTGTGATTGTTTGTCTTTTACTTCCTATAATGGTTACAGATGGCNNNNNNNNNN]
[+] EMBL CD080973 [CGCTTCCTCAATGTCGATGTGATTTTGGTGATTATTTCTTGTGATTTGTGTGGTTAGTAGATATTTTGTCTGAGTCGGTTCATTGTGCTTTCATATTATCTTTGTTTCCAGAATATGAAACAAGAAATCTTATATTTCTACTTGACGCTATTACGACAGTAAGAATCAGTCTAATAATGAACTATCTTCTAGCGGAGAAACAACTGAAAATAAAAACCAAGTGATTCAAGGTTACTTCTATCTTTTATTTAGATTTTGGCGTTTTAGGTCACTTGGATACCGNNNNNNNNNNNNNNNGACTTGAGCAAGCTAAGAATATTCGGACTCTCATTAACCAAAGCAAACCAGATATTATTATTTCAAGTGATCTAAAAAGAGCCAGATACACGGCATATGAGGTAACCGACCCGTCTGTTGTGGAACTGGAATCTCTTACTGGTCGTCCAAGATCTGAAGTTCAACAGTTCACAGAAATAAATTTCAAGAGGGGATATGAATGTGATGGCTGGCGAAACATTGGTGGAGAATGTACTCACGAGGCTCCATCAAGTGTGATTGTTTGTCTTTTACTTCCTATAATGGTTACAGATGGCNNNNNNNNNN]
consensusID : consensus_8072#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence
[AAGAACATGTCCTGCATAAGTGGATATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGACGAAGAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAAGATCCAGAAGGAAGTTATGTGTTCGACTTGCCATCTCGTGAGTACATTCTCCACCAATGTTTCGCCAGCCATCACATTCATATCCCCTCTTGAAATTTATTTCTGTGAACTGTTGAACTTCAGATCTTGGACGACCAGTAAGAGATCCGAAGTTTCTTTCACGTATTCGTGATTCCAGTTCCACAACAGACGGGTCGGTTACCTCATATGCCGTGTATCTGGCTCTTTTTAGATCACTTGAAATAATAATATCTGGTTTGCTTTGGTTAATGAGAGTCCGAATATTCTTAGCTTGCTCAAGTCCAACTGCTGATAGATCGGTATCCAAGTGACTTGGTTTTTATTTTNG]
[-] EMBL CD083734 [AAGAACATGTCCTGCATAAGTGGATATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGACGAAGAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAAGATCCAGAAGGAAGTTATGTGTTCGACTTGCCATCTCGTGAGTACATTCTCCACCAATGTTTCGCCAGCCATCACATTCATATCCCCTCTTGAAATTTATTTCTGTGAACTGTTGAACTTCAGATCTTGGACGACCAGTAAGAGATCCGAAGTTTCTTTCACGTATTCGTGATTCCAGTTCCACAACAGACGGGTCGGTTACCTCATATGCCGTGTATCTGGCTCTTTTTAGATCACTTGAAATAATAATATCTGGTTTGCTTTGGTTAATGAGAGTCCGAATATTCTTAGCTTGCTCAAGTCCAACTGCTGATAGATCGGTATCCAAGTGACTTGGTTTTTATTTTNG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8072#0 AAAATATATTCTTAAAGAATTTTGATTTCTTAAAATGTACAGAGATCTTTGGTTTGTCAC 60
consensus_8072#2 ------------------------------------------------------------
consensus_8072#1 ------------------------------------------------------------
consensus_8072#0 ATTAAAAGTCAAATGAATAATGATTTGTTAGAGCAATTCGGTCGACAGTTACAGAGTAGC 120
consensus_8072#2 ------------------------------------------------------------
consensus_8072#1 ------------------------------------------------------------
consensus_8072#0 AACCAGATGTTAATTAAATTCCTAAGTCATTAAAAATTTAATTTTCTCGCTACAAAATAA 180
consensus_8072#2 ------------------------------------------------------------
consensus_8072#1 ------------------------------------------------------------
consensus_8072#0 CTAACATATCTACATATTTGTGATTTACATTTGTCTATTTGTTTAGTGGATATCCAGCAT 240
consensus_8072#2 ------------------------------------------------------------
consensus_8072#1 ------------------------------------------------------------
consensus_8072#0 ACTCATCTCCGTCATCTTGAGGTATTCTTTCTTCTTGTAAGCATGTTTCGTGAGTAGGAA 300
consensus_8072#2 ------------------------------------------------------------
consensus_8072#1 ------------------------------------------------------------
consensus_8072#0 TTGTCAGATAATGAGGGTCATGCTGTAAACGTTCATGCTTTTCAAACAATGATTTTGTGG 360
consensus_8072#2 ------------------------------------------------AAGAACATGTCC 12
consensus_8072#1 ------------------CGCTTCCTCAATGTCGATGTGATTTTGGTGATTATTTCTTGT 42
* * *
consensus_8072#0 CATTGAACTGGTAACAGACTGTCATAATAGGTAGACTAGGATTAGC-TAAATGAATATAG 419
consensus_8072#2 TGCATAAGTGGATATGGGCGATTCTG-CAGCTTTGGTATTTTCATT-TGGAAAAACATCA 70
consensus_8072#1 GATTTGTGTGGTTAGTAGATATTTTG----TCTGAGTCGGTTCATTGTGCTTTCATATTA 98
*** * * * * * * * * **
consensus_8072#0 GAACACTGAATGGAATTTTTCACACTAGATGTTTCACTGTGAGTC-ATAATATTACCGAA 478
consensus_8072#2 AAACTCTTACAAATTAGCTTCCCCATAGGCGATAAATCACTAG---ACCCTATAATCGGA 127
consensus_8072#1 TCTTTGTTTCCAGAATATGAAACAAGAAATCTTATATTTCTACTTGACGCTATTACGACA 158
* * * * * * * *** * *
consensus_8072#0 AACAGGGAGAGGGGACATAGAAACTCCACGTTCATATTGTGGACACTTTCGATAAGCTTC 538
consensus_8072#2 AA---AGGGTCTTGACGAAGAACGTTGGTATGCTTCATGC---TTGTTTCTATAAG---- 177
consensus_8072#1 GT---AAGAATCAGTCTAATAATGAACTATCTTCTAGCGGAGAAACAACTGAAAAT---- 211
* * * ** * * * **
consensus_8072#0 AAGACTGCAAATATCAAAAGCCACGCCTACTTGGCATATTCCGCAGTTGTTCATC-ACCG 597
consensus_8072#2 ACGAGAACAAAGATCCAGAAGGAAGT-TATGTGTTCGACTTGCCATCTCGTGAGT-ACAT 235
consensus_8072#1 AAAAACCAAGTGATTCAAGGTTACTTCTATCT--TTTATTTAGATTTTGGCGTTTTAGGT 269
* * * ** * * ** * * * * *
consensus_8072#0 AGTTGACACACTGCTTTGGGAA--ATTCTGTTTGTACTTTGAATGAAAGGCCAAAAGCCT 655
consensus_8072#2 TCTCCAC-CAATGTTTCGCCAGCCATCACATTCATATCCCCTCTTGAAATTTAT---TTC 291
consensus_8072#1 CACTTGGATACCGNNNNNNNNNNNNNNNGACTTGAGCAAGCTAAGAATATTCGGACTCTC 329
* * * *
consensus_8072#0 CAAAAACTGACGAATCCAACCACCATGACCTACAATAAGAACATGTCCTGCATAAGTGGA 715
consensus_8072#2 TGTGAACTGTTGAACTTCAGATCTTGGACGACCAGTAAGA----GATCCG---AAGTTTC 344
consensus_8072#1 ATTAACCAAAGCAAACCAGATATTATTATTTCAAGTGA-------TCTAAAAAGAGCCAG 382
* * ** * * * * **
consensus_8072#0 TATGGGCGATTCTGCAGCTTTGGTATTTTCATTTGGAAAAACATCAAAACTCTTACAAAT 775
consensus_8072#2 TTTCA-CGTATTCGTGATTCCAGT----TCCACAACAGACGGGTCGGTTACCTCATATGC 399
consensus_8072#1 ATACACGGCATATGAGGTAACCGACCCGTCTGTTGTGGAAC--TGGAATCTCTTACTGGT 440
* * * * ** * * ** *
consensus_8072#0 TAGCTT---CCCCATAGGCGATAAATCACTAGACCCTATAATCGGAAAAGGGTCTTGAC- 831
consensus_8072#2 CGTGTA---TCTGGCTCTTTTTAGATCACTTGAAATAATAATATCTGGTTTGCTTTGGT- 455
consensus_8072#1 CGTCCAAGATCTGAAGTTCAACAGTTCAC-AGAAATAAATTTCAAGAGGGGATATGAATG 499
* * **** ** * * *
consensus_8072#0 GAA-GAACGTTGGTATGCTTCATGCTTGTTTCTATAAGACGAGAACAAGGATCCAGAAGG 890
consensus_8072#2 TAATGAGAGTCCGAATATTCTTAGCTTGCTCAAGTCCAACT-GCTGATAGATCGGTATCC 514
consensus_8072#1 TGATGGCTGGCGAAACATTGGTGGAGAATGTACTCACGAGGCTCCATCAAGTGTGATTGT 559
* * * * * * * *
consensus_8072#0 AAGTTATGTGTTCGACNTTGCCATCTCGTGAGTACATTCTCTCCCTCGTGCCCTA 945
consensus_8072#2 AAGTGACTTGGTTTTTATTTTNG-------------------------------- 537
consensus_8072#1 TTGTCTTTTACTTCCTATAATGGTTACAGATGGCNNNNNNNNNN----------- 603
** * * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||