cluster # 8086

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Schistosoma mansoni
cluster # 8086 cluster # 8086 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8086#0 length = 398 sequences # 4

consensus_8086#1 length = 211 sequences # 2

consensusID : consensus_8086#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 398
fasta sequence

                              [ACAAACAAAGAGGAAATGAGCCTCCAAGATTTCCACCACAAACGTCTCCACACAATTCATGGTGACTGGTAACACGACCACAGTCATTCCGACAGTTTTCCTCAGTAAGCTGGACACGATCATTACACTTTGGTAAACATTTGTCGAAATCGTCTTGAGTACTGGCATTATGACTGCATCCGAGATAACAATAGAATGTTTGAGGTCCTGTGTTGCTAGAACACAGACCACCACAGTATCGAGTCACATATTCATTGTTTCCCTCACAGTGTTTTTTACATTCTCGTTCAGCGTCACGAGTTTCTTGAGCTGTGAATACACAGTCGAATGAGTGGAGAGAGATGATCAGAATCAATGCAACGAACAGCATCTTCACTAATCTATGTGTAGTTGTGCGA]

[+] EMBL CD188146             [ACAAACAAAGAGGAAATGAGCCTCCAAGATTTCCACCACAAACGTCTCCACACAATTCATGGTGACTGGTAACACGACCACAGTCATTCCGACAGTTTTCCTCAGTAAGCTGGACACGATCATTACACTTTGGTAAACATTTGTCGAAATCGTCTTGAGTACTGGCATTATGACTGCATCCGAGATAACAATAGAATGTTTGAGGTCCTGTGTTGCTAGAACACAGACCACCACAGTATCGAGTCACATATTCATTGTTTCCCTCACAGTGTTTTTTACATTCTCGTTCAGCGTCACGAGTTTCTTGAGCTGTGAATACACAGTCGAATGAGTGGAGAGAGATGATCAGAATCAATGCAACGAACAGCATCTTCACTAATCTA               ]
[-] EMBL CD112843             [                                  ACCACAAACGTCTCCACACAATTCATGGTGACTGGTAACACGACCACAGTCATTCCGACAGTTTTCCTCAGTAAGCTGGACACGATCATTACACTTTGGTAAACATTTGTCGAAATCGTCTTGAGTACTGGCATTATGACTGCATCCGAGATAACAATAGAATGTTTGAGGTCCTGTGTTGCTAGAACACAGACCACCACAGTATCGAGTCACATATTCATTGTTTCCCTCACAGTGTTTTTTACAT                                                                                                                     ]
[-] EMBL CD199856             [                                                                                                                                                                    GCATTATGACTGCATCCGAGATAACAATAGAATGTTTGAGGTCCTGTGTTGCTAGAACACAGACCACCACAGTATCGAGTCACATATTCATTGTTTCCCTCACAGTGTTTTTTACATTCTCGTTCAGCGTCACGAGTTTCTTGAGCTGTGAATACACAGTCGAATGAGTGGAGAGAGATGATCAGAATCAATGCAACGAACAGCATCTTCACTAATCTATGTGTAGTTGTG   ]
[-] EMBL CD190023             [                                                                                                                                                                               GCATCCGAGATAACAATAGAATGTTTGAGGTCCTGTGTTGCTAGAACACAGACCACCATAGTATCGAGTCACATATTCATTGTTTCCCTCACAGTGTTTTTTACATTCTCGTTCAGCGTCACGAGTTTCTTGAGCTGTGAATACACAGTCGAATGAGTGGAGAGAGATGATCAGAATCAATGCAACGAACAGCATCTTCACTAATCTATGTGTAGTTGTGCGA]




>consensus_8086#0
ACAAACAAAGAGGAAATGAGCCTCCAAGATTTCCACCACAAACGTCTCCACACAATTCAT
GGTGACTGGTAACACGACCACAGTCATTCCGACAGTTTTCCTCAGTAAGCTGGACACGAT
CATTACACTTTGGTAAACATTTGTCGAAATCGTCTTGAGTACTGGCATTATGACTGCATC
CGAGATAACAATAGAATGTTTGAGGTCCTGTGTTGCTAGAACACAGACCACCACAGTATC
GAGTCACATATTCATTGTTTCCCTCACAGTGTTTTTTACATTCTCGTTCAGCGTCACGAG
TTTCTTGAGCTGTGAATACACAGTCGAATGAGTGGAGAGAGATGATCAGAATCAATGCAA
CGAACAGCATCTTCACTAATCTATGTGTAGTTGTGCGA

consensusID : consensus_8086#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 211
fasta sequence

                              [AATAAGACCACAGTTACTCAGACACGCTTCTTTACTAAGCTGGACACCACCATCACACTTTGTTTTACAATTGTCGAATTCGCTTTGTTTGGTGGCATTATGACTGCATCCGAGATAACAATAGAATGTTTGAGGTCCTATAGTGCCAGAACACAGAATACCACAGTTTGGAGACACATATTCATTATCTCCTTTACAATTTTTTTCACAT]

[+] EMBL CD110940             [AATAAGACCACAGTTACTCAGACACGCTTCTTTACTAAGCTGGACACCACCATCACACTTTGTTTTACAATTGTCGAATTCGCTTTGTTTGGTGGCATTATGACTGCATCCGAGATAACAATAGAATGTTTGAGGTCCTATAGTGCCAGAACACAGAATACCACAGTTTGGAGACACATATTCATTATCTCCTTTACAATTTTTTTCACAT]
[+] EMBL CD098480             [AATAAGACCACAGTTACTCAGACACGCTTCTTTAGTGAGCTGGACACCACCATCACACTTTGTTTTACAATTGTCGAATTCGCTTTGTTTGGTGGCATTATGACTGCATCCGAGATAACAATAGAATGTTTGAGGTCCTATAGTGCCAGAACACAGAATACCACAGTTTGGAGACACATATTCATTATCTCCTTTACAATTTTTTTCACAT]




>consensus_8086#1
AATAAGACCACAGTTACTCAGACACGCTTCTTTACTAAGCTGGACACCACCATCACACTT
TGTTTTACAATTGTCGAATTCGCTTTGTTTGGTGGCATTATGACTGCATCCGAGATAACA
ATAGAATGTTTGAGGTCCTATAGTGCCAGAACACAGAATACCACAGTTTGGAGACACATA
TTCATTATCTCCTTTACAATTTTTTTCACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8086#0      ACAAACAAAGAGGAAATGAGCCTCCAAGATTTCCACCACAAACGTCTCCACACAATTCAT 60
consensus_8086#1      ------------------------------------------------------------
                                                                                  

consensus_8086#0      GGTGACTGGTAACACGACCACAGTCATTCCGACAGTTTTCCTCAGTAAGCTGGACACGAT 120
consensus_8086#1      ----------AATAAGACCACAGTTACTCAGACACGCTTCTTTACTAAGCTGGACACCAC 50
                                ** * ********* * ** ****   *** * * ************ * 

consensus_8086#0      CATTACACTTTGGTAAACATTTGTCGAAATCGTCTTGAGTACTGGCATTATGACTGCATC 180
consensus_8086#1      CATCACACTTTGTTTTACAATTGTCGAATTCGCTTTGTTTGGTGGCATTATGACTGCATC 110
                      *** ******** *  *** ******** ***  ***  *  ******************

consensus_8086#0      CGAGATAACAATAGAATGTTTGAGGTCCTGTGTTGCTAGAACACAGACCACCACAGTATC 240
consensus_8086#1      CGAGATAACAATAGAATGTTTGAGGTCCTATAGTGCCAGAACACAGAATACCACAGTTTG 170
                      ***************************** *  *** **********  ******** * 

consensus_8086#0      GAGTCACATATTCATTGTTTCCCTCACAGTGTTTTTTACATTCTCGTTCAGCGTCACGAG 300
consensus_8086#1      GAGACACATATTCATTATCTCCTTTACAATTTTTTTCACAT------------------- 211
                      *** ************ * *** * *** * ***** ****                   

consensus_8086#0      TTTCTTGAGCTGTGAATACACAGTCGAATGAGTGGAGAGAGATGATCAGAATCAATGCAA 360
consensus_8086#1      ------------------------------------------------------------
                                                                                  

consensus_8086#0      CGAACAGCATCTTCACTAATCTATGTGTAGTTGTGCGA 398
consensus_8086#1      --------------------------------------