cluster # 8101

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Schistosoma mansoni
cluster # 8101 cluster # 8101 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8101#0 length = 730 sequences # 5

consensus_8101#1 length = 284 sequences # 1

consensusID : consensus_8101#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 730
fasta sequence

                              [AAACTCAAAACATTCTTACCTAGTATCCCGATTGACGGAAATAATCCAAAAAGTGGTGGTGTGTTTATACTAACTCGGTCAAACTCATTTCGTACTGAACAGTTAAAGCGTCCCTCTAACAATTGTCACTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATTCAACTATACCCTGCCCTATCAGTTCTACTGAAGAAAATGAAGTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACGAAGAGCGGGTTTTGCGCAAAAAGGCATTAAGCCTAATGAGACAGCTTTCAAGCAATCCCTCTTCTGGTCTATCTCCCACACATGTTCCTGAATCTCATTCACAATGTATTGAGGAAAGACAGAGACGTCGCCTTGCACAGTTAGTTCATTATGACCGTCAAATTGAAAACCTCAGACAACAAAGAGCAAATGAAACCGTGGAGAGGCGTATTCGGGGAGAAGCGAGAGAGAAAAAATTCCAGTTAATTAGAGCTCGGAAATATTTCGACGAATTTGTCCGTGAATTTCGTCTGAAAAAAATTGCCAAGGTTAATGCTGATGAAAAGATATTTCGTCAGTTTTTTCAGCAACTAATTCANAAACAAAAAGAATATTNTCTGGAAGTGAAAAAACTAGAACGTGAAGAANATCTCCAGA]

[+] EMBL CD156264             [AAACTCAAAACATTCTTACCTAGTATCCCGATTGACGGAAATAATCCAAAAAGTGGTGGTGTGTTTATACTAACTCGGTCAAACTCATTTCGTACTGAACAGTTAAAGCGTCCCTCTAACAATTGTCACTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATTCAACTATACCCTGCCCTATCAGTTCTACTGAAGAAAATGAAGTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACGAAGAGCGGGTTTTGCGCAAAAAGGCATTAAGCCTAATGAGACAGCTTTCAAGCAATCCCTCTTCTGGTCTATCTCCCACACATGTTCCTGAATCTCATTCACAATGTATTGAGGAAAGACAGAGACGTCGCCTTGCACAGTTAGTTCATTATGACCGTCAAATTGAAAACCTCAGACAACAAAGAGCAA                                                                                                                                                                                                                                    ]
[-] EMBL CD156105             [ AACTCAAAACATTCTTACCTAGTATCCCGATTGACGGAAATAATCCAAAAAGTGGTGGTGTGTTTATACTAACTCGGTCAAACTCATTTCGTACTGAGCAGTTAAAGCGTCCCTCTAACAATTGTCACTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATTCAACTATACCCTGCCCTATCAGTTCTACTGAAGAAAATGAAGTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACGAAGAGCGGGTTTTGCGCAAAAAGGCATTAAGCCTAATGAGACAGCATTCAAGCAGTCCCTCTTCTGGTCTATCTCCCACACATGTTCCTGAATCTCATTCACAATGTATTGAGGAAGGACAGAGACGTCGCCTTGCACAGTTAGTTCATTATGACCGTCAAATTGAAAACCTCAGACAACAAAGAGCAAA                                                                                                                                                                                                                                   ]
[-] EMBL CD156255             [ AACTCAAAACATTCTTACCTAGTATCCCGATTGACGGAAATAATCCAAAAAGTGGTGGTGTGTTTATACTAACTCGGTCAAACTCATTTCGTACTGAACAGTTAAAGCGTCCCTCTAACAATTGTCACTGCGATTGCAAAAGTGTAGTTAAATTACACGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATTCAACTATACCCTGCCCTATCAGTTCTACTGAAGAAAATGAAGTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACGAAGAGCGGGTTTTGCGCAAAAAGGCATTAAGCCTAATGAGACAGCTTTCAAGCAATCCCTCTTCTGGTCTATCTCCCACACATGTTCCTGAATCTCATTCACAATGTATTGAGGAAAGACAGAGACGTCGCCTTGCACAGTTAGTTCATTATGACCGTCAAATTGAAAACCTCAGACAACAAAGAGCAAA                                                                                                                                                                                                                                   ]
[+] EMBL CD078961             [                                                                                                                           TGTCACTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATTCAACTATACCCTGCCCTATCAGTTCTGCTGAAGAAAATGAAGTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACGAAGAGCGGGTTTTGCGCAAAAAGGCATTAAGCCTAATGAGACAGCTTTCAAGCAATCCCTCTTCTGGTCTATCTCCCACACATGTTCCTGAATCTCATTCACAATGTATTGAGGAAAGACAGAGACGTCGCCTTGCACAGTTAGTTCATTATGACCGTCAAATTGAAAACCTCAGACAACAAAGAGCAAATGAAACCGTGGAGAGGCGTATTCGGGGAGAAGCGAGAGAGAAAAAATTCCAGTTAATTAGAGCTCGGAAATATTTCGACGAATTTGTCCGTGAATTTCGTCTGAAAAAAATTGCCAAGGTTAATGCTGATGAAAAGATATTTCGTCAGTTTTTTCAGCAACTAATTCANAAACAAAAAGAATATTNTCTGGAAGTGAAAAAACTAGAACGTGAAGAANATCTCCAG ]
[-] EMBL CD073415             [                                                                                                                                      TTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATTCAACTATACCCTGCCCTATCAGTTCTGCTGAAGAAAATGAAGTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACGAAGAGCGGGTTTTGCGCAAAAAGGCATTAAGCCTAATGAGACAGCTTTCAAGCAATCCCTCTTCTGGTCTATCTCCCACACATGTTCCTGAATCTCATTCACAATGTATTGAGGAAAGACAGAGACGTCGCCTTGCACAGTTAGTTCATTATGACCGTCAAATTGAAAACCTCAGACAACAAAGAGCAAATGAAACCGTGGAGAGGCGTATTCGGGGAGAAGCGAGAGAGAAAAAATTCCAGTTAATTAGAGCTCGGAAATATTTCGACGAATTTGTCCGTGAATTTCGTCTGAAAAAAATTGCCAAGGTTAATGCTGATGAAAAGATATTTCGTCAGTTTTTTCAGCAACTAATTCAAAAACAAAAAGAATATTTTCTGGAAGTGAAAAAACTAGAACGTGAAGAAAATCTCCAGA]




>consensus_8101#0
AAACTCAAAACATTCTTACCTAGTATCCCGATTGACGGAAATAATCCAAAAAGTGGTGGT
GTGTTTATACTAACTCGGTCAAACTCATTTCGTACTGAACAGTTAAAGCGTCCCTCTAAC
AATTGTCACTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCA
TTGCATATTTATTCCAATAAGCATTCAACTATACCCTGCCCTATCAGTTCTACTGAAGAA
AATGAAGTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGAT
TTAGATGAACACGAAGAGCGGGTTTTGCGCAAAAAGGCATTAAGCCTAATGAGACAGCTT
TCAAGCAATCCCTCTTCTGGTCTATCTCCCACACATGTTCCTGAATCTCATTCACAATGT
ATTGAGGAAAGACAGAGACGTCGCCTTGCACAGTTAGTTCATTATGACCGTCAAATTGAA
AACCTCAGACAACAAAGAGCAAATGAAACCGTGGAGAGGCGTATTCGGGGAGAAGCGAGA
GAGAAAAAATTCCAGTTAATTAGAGCTCGGAAATATTTCGACGAATTTGTCCGTGAATTT
CGTCTGAAAAAAATTGCCAAGGTTAATGCTGATGAAAAGATATTTCGTCAGTTTTTTCAG
CAACTAATTCANAAACAAAAAGAATATTNTCTGGAAGTGAAAAAACTAGAACGTGAAGAA
NATCTCCAGA

consensusID : consensus_8101#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 284
fasta sequence

                              [CTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATNCAACTATACCCTGCCCTATCAGTTCTACTGAANAAAATGAANTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACNAAGAGCGGGTTTTGCGCAAAAAGGCATATNTTTCGTCAGTTTTTTCAGCAACTAATTCAAAAACAAAAAGAATATTTNCTGGAAGTGAAAAAACTAGAA]

[+] EMBL AI111000             [CTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCATTGCATATTTATTCCAATAAGCATNCAACTATACCCTGCCCTATCAGTTCTACTGAANAAAATGAANTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGAACACNAAGAGCGGGTTTTGCGCAAAAAGGCATATNTTTCGTCAGTTTTTTCAGCAACTAATTCAAAAACAAAAAGAATATTTNCTGGAAGTGAAAAAACTAGAA]




>consensus_8101#1
CTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCATTGCATAT
TTATTCCAATAAGCATNCAACTATACCCTGCCCTATCAGTTCTACTGAANAAAATGAANT
TCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGATTTAGATGA
ACACNAAGAGCGGGTTTTGCGCAAAAAGGCATATNTTTCGTCAGTTTTTTCAGCAACTAA
TTCAAAAACAAAAAGAATATTTNCTGGAAGTGAAAAAACTAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8101#0      AAACTCAAAACATTCTTACCTAGTATCCCGATTGACGGAAATAATCCAAAAAGTGGTGGT 60
consensus_8101#1      ------------------------------------------------------------
                                                                                  

consensus_8101#0      GTGTTTATACTAACTCGGTCAAACTCATTTCGTACTGAACAGTTAAAGCGTCCCTCTAAC 120
consensus_8101#1      ------------------------------------------------------------
                                                                                  

consensus_8101#0      AATTGTCACTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCA 180
consensus_8101#1      --------CTGCGATTGCAAAAGTGTAGTTAAATTACATGCCAAACCTTTAGTGGATCCA 52
                              ****************************************************

consensus_8101#0      TTGCATATTTATTCCAATAAGCATTCAACTATACCCTGCCCTATCAGTTCTACTGAAGAA 240
consensus_8101#1      TTGCATATTTATTCCAATAAGCATNCAACTATACCCTGCCCTATCAGTTCTACTGAANAA 112
                      ************************ ******************************** **

consensus_8101#0      AATGAAGTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGAT 300
consensus_8101#1      AATGAANTTCTGTCCAATCAATCGTTTTATAAATTATTAAATGGATTCCCTAAATTGGAT 172
                      ****** *****************************************************

consensus_8101#0      TTAGATGAACACGAAGAGCGGGTTTTGCGCAAAAAGGCATTAAGCCTAATGAGACAGCTT 360
consensus_8101#1      TTAGATGAACACNAAGAGCGGGTTTTGCGCAAAAAGGCAT-ATNTTTCGTCAG---TTTT 228
                      ************ *************************** *    *  * **     **

consensus_8101#0      TCAAGCAATCCCTCTTCTGGTCTATCTCCCACACATGTTCCTGAATCTCATTCACAATGT 420
consensus_8101#1      TTCAGCAA-------------CTAATTCAAAAACAAAA---AGAATATTTNCTGGAA--- 269
                      *  *****             ***  **  * ***       **** *       **   

consensus_8101#0      ATTGAGGAAAGACAGAGACGTCGCCTTGCACAGTTAGTTCATTATGACCGTCAAATTGAA 480
consensus_8101#1      ---GTGAAAAAACTAGAA------------------------------------------ 284
                         * * *** **    *                                          

consensus_8101#0      AACCTCAGACAACAAAGAGCAAATGAAACCGTGGAGAGGCGTATTCGGGGAGAAGCGAGA 540
consensus_8101#1      ------------------------------------------------------------
                                                                                  

consensus_8101#0      GAGAAAAAATTCCAGTTAATTAGAGCTCGGAAATATTTCGACGAATTTGTCCGTGAATTT 600
consensus_8101#1      ------------------------------------------------------------
                                                                                  

consensus_8101#0      CGTCTGAAAAAAATTGCCAAGGTTAATGCTGATGAAAAGATATTTCGTCAGTTTTTTCAG 660
consensus_8101#1      ------------------------------------------------------------
                                                                                  

consensus_8101#0      CAACTAATTCANAAACAAAAAGAATATTNTCTGGAAGTGAAAAAACTAGAACGTGAAGAA 720
consensus_8101#1      ------------------------------------------------------------
                                                                                  

consensus_8101#0      NATCTCCAGA 730
consensus_8101#1      ----------