cluster # 811

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Schistosoma mansoni
cluster # 811 cluster # 811 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_811#0 length = 839 sequences # 1

consensus_811#1 length = 580 sequences # 1

consensusID : consensus_811#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 839
fasta sequence

                              [GAGCCATATTCGGCCGAGGGGTGGTGGAGCATCGTTAGATGTGATCCCATGGTAGATGAGCGATAATAGGTTCATACACCATTTTTCCCTAGGATCCTTGCACTCATGTGCACCATTGTTTTGGAATCCGAATATTTCAATTCACCTAGGTGGATCCTCTGTACTCACATTTTTGTAGCAAACAACTGGTGTCTGGCCTCTCTAGGGCCTAAGTTCTCCGACCCATCTTTTTTACAAAAAAGGCAGTATCACTAAAGTTGGCAATTTTTTAAATGCTAATTTAGTAGTGGTTTTCGTTTTGGGAGATTTCGACATCCATATTAAAGTGAGGGAAACCTTATCTGTGGTATTTGAATCAAAATAGTTTTTTTTCAGAATTTAGCAATGTCTTTTTTGAATTTGATCGTTAGACTCGTCTTCCTCCAGAGGTAAATAGGATCTTGTTGGTGAAAAACCTGCCCTATAACATATCAGCGGAAGAAATGTATGATATTTTCGGCAAGTACGGTGCTATCCGTCAAATTCGCATCGGCAACACTCCTGAAACGAAAGGAACTGCTCTAGTTATCTATGAAGATATTTTCGACGCTAAGAACGCTTGTGATCACCTCAGTGGCTTTAACGTTTGTAACCGATATCTCGTAGTTCTGTACTACCAGAGAAACAAGGTATTCTGTATTGTTTTATTGTGTCGTTATCATGCTTTATATTAATTTGCATATTTCCATATGATGACGTCAGCGAAAATTATTTGTCTATTAAATTTATACAGCCATAAAACATTAGTAATATGGTAGCCTCCATACTGTCTAAGAATGTAAATGCAACACCTANTAAGC]

[+] EMBL CD081571             [GAGCCATATTCGGCCGAGGGGTGGTGGAGCATCGTTAGATGTGATCCCATGGTAGATGAGCGATAATAGGTTCATACACCATTTTTCCCTAGGATCCTTGCACTCATGTGCACCATTGTTTTGGAATCCGAATATTTCAATTCACCTAGGTGGATCCTCTGTACTCACATTTTTGTAGCAAACAACTGGTGTCTGGCCTCTCTAGGGCCTAAGTTCTCCGACCCATCTTTTTTACAAAAAAGGCAGTATCACTAAAGTTGGCAATTTTTTAAATGCTAATTTAGTAGTGGTTTTCGTTTTGGGAGATTTCGACATCCATATTAAAGTGAGGGAAACCTTATCTGTGGTATTTGAATCAAAATAGTTTTTTTTCAGAATTTAGCAATGTCTTTTTTGAATTTGATCGTTAGACTCGTCTTCCTCCAGAGGTAAATAGGATCTTGTTGGTGAAAAACCTGCCCTATAACATATCAGCGGAAGAAATGTATGATATTTTCGGCAAGTACGGTGCTATCCGTCAAATTCGCATCGGCAACACTCCTGAAACGAAAGGAACTGCTCTAGTTATCTATGAAGATATTTTCGACGCTAAGAACGCTTGTGATCACCTCAGTGGCTTTAACGTTTGTAACCGATATCTCGTAGTTCTGTACTACCAGAGAAACAAGGTATTCTGTATTGTTTTATTGTGTCGTTATCATGCTTTATATTAATTTGCATATTTCCATATGATGACGTCAGCGAAAATTATTTGTCTATTAAATTTATACAGCCATAAAACATTAGTAATATGGTAGCCTCCATACTGTCTAAGAATGTAAATGCAACACCTANTAAGC]




>consensus_811#0
GAGCCATATTCGGCCGAGGGGTGGTGGAGCATCGTTAGATGTGATCCCATGGTAGATGAG
CGATAATAGGTTCATACACCATTTTTCCCTAGGATCCTTGCACTCATGTGCACCATTGTT
TTGGAATCCGAATATTTCAATTCACCTAGGTGGATCCTCTGTACTCACATTTTTGTAGCA
AACAACTGGTGTCTGGCCTCTCTAGGGCCTAAGTTCTCCGACCCATCTTTTTTACAAAAA
AGGCAGTATCACTAAAGTTGGCAATTTTTTAAATGCTAATTTAGTAGTGGTTTTCGTTTT
GGGAGATTTCGACATCCATATTAAAGTGAGGGAAACCTTATCTGTGGTATTTGAATCAAA
ATAGTTTTTTTTCAGAATTTAGCAATGTCTTTTTTGAATTTGATCGTTAGACTCGTCTTC
CTCCAGAGGTAAATAGGATCTTGTTGGTGAAAAACCTGCCCTATAACATATCAGCGGAAG
AAATGTATGATATTTTCGGCAAGTACGGTGCTATCCGTCAAATTCGCATCGGCAACACTC
CTGAAACGAAAGGAACTGCTCTAGTTATCTATGAAGATATTTTCGACGCTAAGAACGCTT
GTGATCACCTCAGTGGCTTTAACGTTTGTAACCGATATCTCGTAGTTCTGTACTACCAGA
GAAACAAGGTATTCTGTATTGTTTTATTGTGTCGTTATCATGCTTTATATTAATTTGCAT
ATTTCCATATGATGACGTCAGCGAAAATTATTTGTCTATTAAATTTATACAGCCATAAAA
CATTAGTAATATGGTAGCCTCCATACTGTCTAAGAATGTAAATGCAACACCTANTAAGC

consensusID : consensus_811#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence

                              [CATTTTATTGATTATTTTGCCAAAATTATAAGTTTTATTTCCACAAGGATTTAAGAATGTCTGGTGTGAAAAACCGCGAAGAAGCCTCGGATTCGTTGTGAAATGAATCATTTCATTTTCGGAGTATTTAATCCATATTTTGCCTTCAACCGATCTAATTCTTCTTTCTTTTTATCTACATCAGTTTTCTTGAATTGCTGCAAAAGGAAGGAAAAGCCATTAAGAACAACCTAAAAATATTATGCACATACGTATAGTTAGGGTTAAAAAGAACCTGATATTTATACACGAACTCAGAGACCACAGGTTTTGATTGAAACAGTCGAGGCCAACCTAGTTAACAAGCATAGATTCGTTTACTATGTCAAACACATCAACCACGTGAAACTTGTTAAATAGGTCGGAGTAATATAAGCATCAAAAAGCCGTCTAGCTCGTTCGATATTTTTGTCTTAACTATATGGTGCTTATACCTGACAGAAAATCCGGCATGCCCCTATACTTATTATCAAAAAGGTCTGAACTAAAGGATGTTTTAACATTGACTGCTTTATAGGTGTTGCATTTACATTCTTAGACA]

[+] EMBL CD075397             [CATTTTATTGATTATTTTGCCAAAATTATAAGTTTTATTTCCACAAGGATTTAAGAATGTCTGGTGTGAAAAACCGCGAAGAAGCCTCGGATTCGTTGTGAAATGAATCATTTCATTTTCGGAGTATTTAATCCATATTTTGCCTTCAACCGATCTAATTCTTCTTTCTTTTTATCTACATCAGTTTTCTTGAATTGCTGCAAAAGGAAGGAAAAGCCATTAAGAACAACCTAAAAATATTATGCACATACGTATAGTTAGGGTTAAAAAGAACCTGATATTTATACACGAACTCAGAGACCACAGGTTTTGATTGAAACAGTCGAGGCCAACCTAGTTAACAAGCATAGATTCGTTTACTATGTCAAACACATCAACCACGTGAAACTTGTTAAATAGGTCGGAGTAATATAAGCATCAAAAAGCCGTCTAGCTCGTTCGATATTTTTGTCTTAACTATATGGTGCTTATACCTGACAGAAAATCCGGCATGCCCCTATACTTATTATCAAAAAGGTCTGAACTAAAGGATGTTTTAACATTGACTGCTTTATAGGTGTTGCATTTACATTCTTAGACA]




>consensus_811#1
CATTTTATTGATTATTTTGCCAAAATTATAAGTTTTATTTCCACAAGGATTTAAGAATGT
CTGGTGTGAAAAACCGCGAAGAAGCCTCGGATTCGTTGTGAAATGAATCATTTCATTTTC
GGAGTATTTAATCCATATTTTGCCTTCAACCGATCTAATTCTTCTTTCTTTTTATCTACA
TCAGTTTTCTTGAATTGCTGCAAAAGGAAGGAAAAGCCATTAAGAACAACCTAAAAATAT
TATGCACATACGTATAGTTAGGGTTAAAAAGAACCTGATATTTATACACGAACTCAGAGA
CCACAGGTTTTGATTGAAACAGTCGAGGCCAACCTAGTTAACAAGCATAGATTCGTTTAC
TATGTCAAACACATCAACCACGTGAAACTTGTTAAATAGGTCGGAGTAATATAAGCATCA
AAAAGCCGTCTAGCTCGTTCGATATTTTTGTCTTAACTATATGGTGCTTATACCTGACAG
AAAATCCGGCATGCCCCTATACTTATTATCAAAAAGGTCTGAACTAAAGGATGTTTTAAC
ATTGACTGCTTTATAGGTGTTGCATTTACATTCTTAGACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_811#0      GAGCCATATTCGGCCGAGGGGTGGTGGAGCATCGTTAGATGTGATCCCATGGTAGATGAG 60
consensus_811#1      ------------------------------------------------------------
                                                                                 

consensus_811#0      CGATAATAGGTTCATACACCATTTTTCCCTAGGATCCTTGCACTCATGTGCACCATTGTT 120
consensus_811#1      ------------------------------------------------------------
                                                                                 

consensus_811#0      TTGGAATCCGAATATTTCAATTCACCTAGGTGGATCCTCTGTACTCACATTTTTGTAGCA 180
consensus_811#1      ------------------------------------------------------------
                                                                                 

consensus_811#0      AACAACTGGTGTCTGGCCTCTCTAGGGCCTAAGTTCTCCGACCCATCTTTTTTACAAAAA 240
consensus_811#1      ----------------------------------CATTTTATTGATTATTTTGCCAAAAT 26
                                                         *   *   **  ****  ***** 

consensus_811#0      AGGCAGTATCACTAAAGTTGGCAATTTTTTAAATGCTAATTTAGTAGTGGTTTTCGTTTT 300
consensus_811#1      TATAAGTTTTATT----TCCACAAGGATTTAAGAAT--GTCTGGTGTGAAAAACCGCG-- 78
                         *** * * *    *   ***   *****       * * **         **    

consensus_811#0      GGGAGATTTCGACATCCATATTAAAGTGAGGGAAACCTTATCTGTGGTATTTGAATCAAA 360
consensus_811#1      AAGAAGCCTCGG-ATTCGTTGTGAAATGAATCATTTCATTTTCGGAGTATTTAATCCATA 137
                       **    ***  ** * *  * ** ***   *   * * *  *  ****** *  ** *

consensus_811#0      ATAGTTTTTTTTCAGAATTTAGCAATGTCTTTTTTGAATTTGATCGTTAGACTCGTCTTC 420
consensus_811#1      TTTTGCCTTCAACCGATCTAATTCTTCTTTCTTTTTATCTACATCAGTTTTCTTGAATTG 197
                      *     **   * **  * *    * * * **** *  *  ***  *   ** *  ** 

consensus_811#0      CTCCAGAGGTAAATAGGATCTTGTTGGTGAAAAACCTGCCCTATAACATATCAGCGGAAG 480
consensus_811#1      CTGCAAAAGGAAGGAAAAGCC-ATTAA-GAACAACCTA------AAAATATTATGCACAT 249
                     ** ** * * **  *  * *   **   *** *****       ** **** *     * 

consensus_811#0      AAATGTA-TGATATTTTCGGCAAGTACGGTGCT-ATCCGTCAAATTCGCATCGGCAACAC 538
consensus_811#1      ACGTATAGTTAGGGTTAAAAAGAACCTGATATTTATACACGAACTCAGAGACCACAGGTT 309
                     *  * ** * *   **      *    * *  * ** *   ** *  *   *  **    

consensus_811#0      TC--CTGAAACGAAAGGAACTGCTCTAGTTATCTATGAAGATATTTTCGACGCTAAGAAC 596
consensus_811#1      TTGATTGAAACAGTCGAGGCCAACCTAGTTA---ACAAGCATAGATTCG---TTTACTAT 363
                     *    ******    *   *    *******   *  *  ***  ****    * *  * 

consensus_811#0      GCTTGTGATCACCTCAGTGGCTTTAACGTTTGTAACCGATATCTCGTAGTTCTGTAC-TA 655
consensus_811#1      GTC---AAACACATCAACCACGTGAAACTTGTTAA---ATAGGTCGGAGTAATATAAGCA 417
                     *      * *** ***    * * **  **  ***   ***  *** ***  * **   *

consensus_811#0      CCAGAGAAAC----AAGGTATTCTGTATTGTTTT----ATTGTGTCGTTATCATGCTTTA 707
consensus_811#1      TCAAAAAGCCGTCTAGCTCGTTCGATATTTTTGTCTTAACTATATGGTGCTTATACCTGA 477
                      ** * *  *    *     ***  **** ** *    * * * * **  * ** * * *

consensus_811#0      TATTAATTTGCATATTTCCATATGATGACGTCAGCGAAAATTATTTGTCTATTAAATTTA 767
consensus_811#1      CAGAAAATCCGGCATGCCCCTATACTTA--TTATCAAAAAGGTCTGAACTA--AAGGATG 533
                      *  ** *     **  ** ***  * *  * * * ****    *   ***  **   * 

consensus_811#0      TACAGCCATAAAACATTAGTAATATG-GTAGCCTCCATACTGTCTAAGAATGTAAATGCA 826
consensus_811#1      TTTTAACATTGACTGCT--TTATAGGTGTTGCATTTACATTCTTAGACA----------- 580
                     *     ***  *    *  * *** * ** ** *  * * * *   * *           

consensus_811#0      ACACCTANTAAGC 839
consensus_811#1      -------------