cluster # 8115

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Schistosoma mansoni
cluster # 8115 cluster # 8115 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8115#0 length = 341 sequences # 1

consensus_8115#1 length = 231 sequences # 4
consensus_8115#2 length = 227 sequences # 1

consensusID : consensus_8115#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [CAAAAACTGTTTGGCAATCTTCTGTCTCATACAGCTTGTTGTATTTTCAAAATGTGATGGTTGGACAATCACATGCAACGAAACATATTGTTGTGAAAACACCAATGATGGGAAACTTTGTTGTGATGGGGAGTATTGTTCTGCTTCAATAAGTAATCATCAAGATTTGACTAAACGTTACCAACAGAACCTTTTGATGACTCAACAGATAAAACAGTTTGCAAGAAGTTTAAAATAATATAACGTTCAAAAAGATAAGTGATCTGAACGAACTACGATTATTGATAATGCAAACTGGACGGTCGCTAAATTACCCCGGAATTCCTAAAATTCCTGGGACA]

[+] EMBL AW497769             [CAAAAACTGTTTGGCAATCTTCTGTCTCATACAGCTTGTTGTATTTTCAAAATGTGATGGTTGGACAATCACATGCAACGAAACATATTGTTGTGAAAACACCAATGATGGGAAACTTTGTTGTGATGGGGAGTATTGTTCTGCTTCAATAAGTAATCATCAAGATTTGACTAAACGTTACCAACAGAACCTTTTGATGACTCAACAGATAAAACAGTTTGCAAGAAGTTTAAAATAATATAACGTTCAAAAAGATAAGTGATCTGAACGAACTACGATTATTGATAATGCAAACTGGACGGTCGCTAAATTACCCCGGAATTCCTAAAATTCCTGGGACA]




>consensus_8115#0
CAAAAACTGTTTGGCAATCTTCTGTCTCATACAGCTTGTTGTATTTTCAAAATGTGATGG
TTGGACAATCACATGCAACGAAACATATTGTTGTGAAAACACCAATGATGGGAAACTTTG
TTGTGATGGGGAGTATTGTTCTGCTTCAATAAGTAATCATCAAGATTTGACTAAACGTTA
CCAACAGAACCTTTTGATGACTCAACAGATAAAACAGTTTGCAAGAAGTTTAAAATAATA
TAACGTTCAAAAAGATAAGTGATCTGAACGAACTACGATTATTGATAATGCAAACTGGAC
GGTCGCTAAATTACCCCGGAATTCCTAAAATTCCTGGGACA

consensusID : consensus_8115#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 231
fasta sequence

                              [TTCGGCGATTTGTAACCAACAGAACCTTTTGATGACTCAACAGATAAAAACAGTTTGCAAGAAGTTTAAAATAATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAAATGCAAAACTGAACGATCG-CTAAATTATCCCTGTAATTTCTTAAAATT-CATTGGACAAAAAAATATTGCTTGTGGATGCTTTAATTTTACAATAATAAAACTATAT]

[+] EMBL AW146475             [TTCGGCGATTTGTAACCAACAGAACCTTTTGATGACTCAACAGATAAAAACAGTTTGCAAGAAGTTTAAAATAATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAAATGCAAAACTGAACGATCG CTAAATTATCCCTGTAATTTCTTAAAATT CATTGGACAAAAAAATATTGCTTGTGGATGCTTTAATTTTACAATAATAAAAC     ]
[-] EMBL AI740431             [                                                               GTTTAAAATAATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAAATGCAAAACTGAACGATCG CTAAATTATCCCTGTAATTTCTTAAAATT CATTGGACAAAAAAATATTGCTTGTGGATGCTTTAATTTTACAATAATAAAACT    ]
[-] EMBL AI740402             [                                                                        AATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAAATGCAAAACTGAACGATCG CTAAATTATCCCTGTAATTTCTTAAAATT CATTGGACAAAAAAATATTGCTTGTGGATGCTTTAATTTTACAATAATAAAACT    ]
[-] EMBL AI026207             [                                                                                                        ACGAACTACGATTATTGATAAATGCAAAACTGAACGATCGACTAAATTATCCCTGTAATTTCTTAAAATTACATTGGACAAAAAAATATTGCTTGTGGATGCTTTAATTTTACAATAATAAAACTATAT]




>consensus_8115#1
TTCGGCGATTTGTAACCAACAGAACCTTTTGATGACTCAACAGATAAAAACAGTTTGCAA
GAAGTTTAAAATAATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATT
GATAAATGCAAAACTGAACGATCGCTAAATTATCCCTGTAATTTCTTAAAATTCATTGGA
CAAAAAAATATTGCTTGTGGATGCTTTAATTTTACAATAATAAAACTATAT

consensusID : consensus_8115#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 227
fasta sequence

                              [ACTGATTGTTTACGAAAAACATTTCATGACTTACTAATGACTAATTAAATTCACTTTTTTCGTTATTTTTCATTGAAGTAATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAATGCAAAACTGAACGATCGCTAATTATCCCTGTATTTCTTAAAATTCATTGGACAAAAATTTGGCTTGTGGATGCTTAATTTACCATAATAAACTA]

[+] EMBL AI764931             [ACTGATTGTTTACGAAAAACATTTCATGACTTACTAATGACTAATTAAATTCACTTTTTTCGTTATTTTTCATTGAAGTAATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAATGCAAAACTGAACGATCGCTAATTATCCCTGTATTTCTTAAAATTCATTGGACAAAAATTTGGCTTGTGGATGCTTAATTTACCATAATAAACTA]




>consensus_8115#2
ACTGATTGTTTACGAAAAACATTTCATGACTTACTAATGACTAATTAAATTCACTTTTTT
CGTTATTTTTCATTGAAGTAATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTAC
GATTATTGATAATGCAAAACTGAACGATCGCTAATTATCCCTGTATTTCTTAAAATTCAT
TGGACAAAAATTTGGCTTGTGGATGCTTAATTTACCATAATAAACTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8115#0      CAAAAACTGTTTGGCAATCTTCTGTCTCATACAGCTTGTTGTATTTTCAAAATGTGATGG 60
consensus_8115#1      ------------------------------------------------------------
consensus_8115#2      ------------------------------------------------------------
                                                                                  

consensus_8115#0      TTGGACAATCACATGCAACGAAACATATTGTTGTGAAAACACCAATGATGGGAAACTTTG 120
consensus_8115#1      ------------------------------------------------------------
consensus_8115#2      ------------------------------------------------------------
                                                                                  

consensus_8115#0      TTGTGATGGGGAGTATTGTTCTGCTTCAATAAGTAATCATCAAGATTTGACTAAACGTTA 180
consensus_8115#1      ---------------------------------------------TTCGGCGATTTGTAA 15
consensus_8115#2      --------------------------------------ACTGATTGTTTACGAAAAACAT 22
                                                                    *   * *       

consensus_8115#0      CCAACAGAACCTTTTGATGACTCAACAGATAAAA-CAGTTTGCAAGAAGT--TTAAAATA 237
consensus_8115#1      CCAACAGAACCTTTTGATGACTCAACAGATAAAAACAGTTTGCAAGAAGT--TTAAAATA 73
consensus_8115#2      TT--CATGACTTACTAATGACTAATTAAATTCACTTTTTTCGTTATTTTTCATTGAAGTA 80
                          **  ** *  * ****** *  * **  *     ** *  *    *  ** ** **

consensus_8115#0      ATATAACGTTCAAAAAGATAAGT-GATCTGAACGAACTACGATTATTGATAA-TGCAAA- 294
consensus_8115#1      ATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAAATGCAAAA 133
consensus_8115#2      ATATAACGTTCAAAAAGATAAGTTGATCTGAACGAACTACGATTATTGATAA-TGCAAAA 139
                      *********************** **************************** ****** 

consensus_8115#0      CTGGACGGTCGCTAAATTACCCCGGAA--TTCCTAAAATTCCTGGGACA----------- 341
consensus_8115#1      CTGAACGATCGCTAAATTATCCCTGTAATTTCTTAAAATTCATTGGACAAAAAAATATTG 193
consensus_8115#2      CTGAACGATCGCTAA-TTATCCCTGTA-TTTCTTAAAATTCATTGGACAAAA--ATTTGG 195
                      *** *** ******* *** *** * *  *** ******** * *****           

consensus_8115#0      --------------------------------------
consensus_8115#1      CTTGTGGATGCTTTAATTTTACAATAATAAAACTATAT 231
consensus_8115#2      CTTGTGGATGCTTAATTTACCATAATAAACTA------ 227