cluster # 8123

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Schistosoma mansoni
cluster # 8123 cluster # 8123 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8123#0 length = 876 sequences # 5

consensus_8123#1 length = 305 sequences # 1

consensusID : consensus_8123#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 876
fasta sequence

                              [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTAAGACAAGGATTACTATGTATTTTAAAGAATGAAATGAACATTCAGTATACATGTTATATGATATCTCTTAGTGGTCGAAATATTAGTGAATGTAAACCGAAAAAATTAGGTTCAACAAGTTTAACGAAAATAAATCATGCATTTACAATGACTTTAAAAAGGTAAATACACAATAGGTGAATAGTGAAACTATAAAACACCA-TTGCTCATACGCGGCGTAAGCCATAATTTTAGTCGAAAAGCATCTCTTCCATTCAAATAATAACGAATAAGTCTTTTGTCTCTGTAGAATCCGAGCTGCTCATAAAGTGAAAGGGCTGCTTTGTTGTCAACTTCTGCTTCTAAAACAATTTCATCACACCTATCTTGAATCATAAGTTCGATTGCTAGTTGAACCAACCGTGATCCAATGCCAATTCTACGGTGATTTTTTTCAACTGCAAGCATAGCTATATATCCTCTTCGAACATTTTCTAAATGAGTTTCCATTTTGCAAACAATTGTGCCCACACAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTTGGCCAGTTGTATATAAAG-TATCGATAAGTAT-TATAGGAATAAGGTTCGGAGAGATCGTTAGCAATGAGATTGATAATGCTATTTAAATCTGATTCGCCAATATACTGCCGAAACGTGATTTTATTTTGCATATCTTTGAATAGAGGTTCACATGGTTGAAAATTCTCTTCACTTTGACATTTTTCCGTCAGAACGACTTTGTTAAGCTCGGTAGAAAGTTTAACATCTTCTGACATCTCCAGTTGCCTACACGTGTTACTTCCTCAAGGTCACGCA]

[+] EMBL BF936445             [ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTAAGACAAGGATTACTATGTATTTTAAAGAATGAAATGAACATTCAGTATACATGTTATATGATATCTCTTAGTGGTCGAAATATTAGTGAATGTAAACCGAAAAAATTAGGTTCAACAAGTTTAACGAAAATAAATCATGCATTTACAATGACTTTAAAAAGGTAAATACACAATAGGTGAATAGTGAAACTATAAAACACCA TTGCTCATACGCGGCGTAAGCCATAATTTTAGTCGAAAAGCATCTCTTCCATTCAAATAATAACGAATAAGTCTTTTGTCTCTGTAGAATCCGAGCTGCTCATAAAGTGAAAGGGCTGCTTTGTTGTCAACTTCTGCTTCTAAAACAATTTCATCACACCTATCTTGAATCATAAGTTCGATTGCTAGTTGAACCAACCGTGATCCAATGCCAATTCTACGGTGATTTTTTTCAACTGCAAGCATAGCTATATATCCTCTTCGAACATTTTCTAAATGAGTTTCCATTTTGCAAACAATTGTGCCCACACAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTTGGCCAGTTGTATATAAAG TATCGATAAGTAT TATg                                                                                                                                                                                                                                                 ]
[+] EMBL AA999277             [                                                           TTACTATGTATTTTAAAGAATGAAATGAACATTCAGTATACATGTTATATGATATCTCTTAGTGGTCGAAATATTAGTGAATGTAAACCGAAAAAATTAGGTTCAACAAGTTTAACGAAADTAAATCATGCATTTACAATGACTTTAAAAAGGTAAATACACAATAGGTGAATAGTGAAACTATAAAACACCATTTTCTCATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD136764             [                                                                                                                                                                                                                                                                                GCCATAATTTTAGTCGAAAAGCATCTCTTCCATTCAAATAATAACGAATAAGTCTTTTGTCTCTGTAGAATCCGAGCTGCTCATAAAGTGAAAGGGCTGCTTTGTTGTCAACTTCTGCTTCTAAAACAATTTCATCACACCTATCTTGAATCATAAGTTCGATTGCTAGTTGAACCAACCGTGATCCAATGCCAATTCTACGGTGATTTTTTTCAACTGCAAGCATAGCTATATATCCTCTTCGAACATTTTCTAAATGAGTTTCCATTTTGCAAACAATTGTGCCCACACAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTTGGCCAGTTGTATATA                                                                                                                                                                                                                                                                       ]
[+] EMBL CD190861             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ATCGTCCTCACTAACAGCCAATAAACACAGCTTTGGCCAGTTGTATATAAAGCTATCGATAAGTATATA AGGAATAAGGTTCGGAGAGATCGTTAGCAATGAGATTGATAATGCTATTTAAATCTGATTCGCCAATATACTGCCGAAACGTGATTTTATTTTGCATATCTTTGAATAGAGGTTCACATGGTTGAAAATTCTCTTCACTTTGACATTTTTCCGTCAGAACGACTTTGTTAAGCTCGGTAGAAAGTTTAACATCTTCTGACATCTCCAGTTGCCTACACGTGTTACTTCCTCAAGGTCACGCA]
[-] EMBL CD078075             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TATATAAAG TATCGATAAGTA  TATATGAATAAGGTTCGGAGAGATCGTTAGCAATGAGATTGATAATGCTATTTAAATCTGATTCGCCAATATACTGCCGAAACGTGATTTTATTTTGCATATCTTTGAATAGAGGTTCACATGGTTGAAAATTCTCTTCACTTTGACATTTTTCCGTCAGAACGACTTTGTTAAGCTCGGTAGAAAGTTTAACATCTTCTGACATCTCCAGTTGCCTACATGTGTT CTTCCcctc         ]




>consensus_8123#0
ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTAAGACAAGGAT
TACTATGTATTTTAAAGAATGAAATGAACATTCAGTATACATGTTATATGATATCTCTTA
GTGGTCGAAATATTAGTGAATGTAAACCGAAAAAATTAGGTTCAACAAGTTTAACGAAAA
TAAATCATGCATTTACAATGACTTTAAAAAGGTAAATACACAATAGGTGAATAGTGAAAC
TATAAAACACCATTGCTCATACGCGGCGTAAGCCATAATTTTAGTCGAAAAGCATCTCTT
CCATTCAAATAATAACGAATAAGTCTTTTGTCTCTGTAGAATCCGAGCTGCTCATAAAGT
GAAAGGGCTGCTTTGTTGTCAACTTCTGCTTCTAAAACAATTTCATCACACCTATCTTGA
ATCATAAGTTCGATTGCTAGTTGAACCAACCGTGATCCAATGCCAATTCTACGGTGATTT
TTTTCAACTGCAAGCATAGCTATATATCCTCTTCGAACATTTTCTAAATGAGTTTCCATT
TTGCAAACAATTGTGCCCACACAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTT
GGCCAGTTGTATATAAAGTATCGATAAGTATTATAGGAATAAGGTTCGGAGAGATCGTTA
GCAATGAGATTGATAATGCTATTTAAATCTGATTCGCCAATATACTGCCGAAACGTGATT
TTATTTTGCATATCTTTGAATAGAGGTTCACATGGTTGAAAATTCTCTTCACTTTGACAT
TTTTCCGTCAGAACGACTTTGTTAAGCTCGGTAGAAAGTTTAACATCTTCTGACATCTCC
AGTTGCCTACACGTGTTACTTCCTCAAGGTCACGCA

consensusID : consensus_8123#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence

                              [ACTTNNGNTTCTAAAACAATTTNATCACACCNATCTNGAATNATAAGTTNGANNGCTAGTTGAACCAACCGTGATCCAATGCCAATTNTACGGNGAAANNNTTNAACTGCAAGCATAGCTATATATCCTGTTCGAACATTTTCTAAATGAGTTTCCATTTTGCANACAATTGTGCCCACACAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTTGGCCAGTTGTATATAAAGTATCGATAAGTATATATGGAATAAGGTTCGGAGAGATCGTTAGCAATGAGATTGATAATGCTATTTAA]

[-] EMBL AA629473             [ACTTNNGNTTCTAAAACAATTTNATCACACCNATCTNGAATNATAAGTTNGANNGCTAGTTGAACCAACCGTGATCCAATGCCAATTNTACGGNGAAANNNTTNAACTGCAAGCATAGCTATATATCCTGTTCGAACATTTTCTAAATGAGTTTCCATTTTGCANACAATTGTGCCCACACAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTTGGCCAGTTGTATATAAAGTATCGATAAGTATATATGGAATAAGGTTCGGAGAGATCGTTAGCAATGAGATTGATAATGCTATTTAA]




>consensus_8123#1
ACTTNNGNTTCTAAAACAATTTNATCACACCNATCTNGAATNATAAGTTNGANNGCTAGT
TGAACCAACCGTGATCCAATGCCAATTNTACGGNGAAANNNTTNAACTGCAAGCATAGCT
ATATATCCTGTTCGAACATTTTCTAAATGAGTTTCCATTTTGCANACAATTGTGCCCACA
CAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTTGGCCAGTTGTATATAAAGTAT
CGATAAGTATATATGGAATAAGGTTCGGAGAGATCGTTAGCAATGAGATTGATAATGCTA
TTTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8123#0      ACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTAAGACAAGGAT 60
consensus_8123#1      ------------------------------------------------------------
                                                                                  

consensus_8123#0      TACTATGTATTTTAAAGAATGAAATGAACATTCAGTATACATGTTATATGATATCTCTTA 120
consensus_8123#1      ------------------------------------------------------------
                                                                                  

consensus_8123#0      GTGGTCGAAATATTAGTGAATGTAAACCGAAAAAATTAGGTTCAACAAGTTTAACGAAAA 180
consensus_8123#1      ------------------------------------------------------------
                                                                                  

consensus_8123#0      TAAATCATGCATTTACAATGACTTTAAAAAGGTAAATACACAATAGGTGAATAGTGAAAC 240
consensus_8123#1      ------------------------------------------------------------
                                                                                  

consensus_8123#0      TATAAAACACCATTGCTCATACGCGGCGTAAGCCATAATTTTAGTCGAAAAGCATCTCTT 300
consensus_8123#1      ------------------------------------------------------------
                                                                                  

consensus_8123#0      CCATTCAAATAATAACGAATAAGTCTTTTGTCTCTGTAGAATCCGAGCTGCTCATAAAGT 360
consensus_8123#1      ------------------------------------------------------------
                                                                                  

consensus_8123#0      GAAAGGGCTGCTTTGTTGTCAACTTCTGCTTCTAAAACAATTTCATCACACCTATCTTGA 420
consensus_8123#1      ---------------------ACTTNNGNTTCTAAAACAATTTNATCACACCNATCTNGA 39
                                           ****  * ************** ******** **** **

consensus_8123#0      ATCATAAGTTCGATTGCTAGTTGAACCAACCGTGATCCAATGCCAATTCTACGGTGATTT 480
consensus_8123#1      ATNATAAGTTNGANNGCTAGTTGAACCAACCGTGATCCAATGCCAATTNTACGGNGAAAN 99
                      ** ******* **  ********************************* ***** **   

consensus_8123#0      TTTTCAACTGCAAGCATAGCTATATATCCTCTTCGAACATTTTCTAAATGAGTTTCCATT 540
consensus_8123#1      NNTTNAACTGCAAGCATAGCTATATATCCTGTTCGAACATTTTCTAAATGAGTTTCCATT 159
                        ** ************************* *****************************

consensus_8123#0      TTGCAAACAATTGTGCCCACACAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTT 600
consensus_8123#1      TTGCANACAATTGTGCCCACACAAGTATCGTCCTCACTAACAGCCAATAAACACAGCTTT 219
                      ***** ******************************************************

consensus_8123#0      GGCCAGTTGTATATAAAGTATCGATAAGTATTATAGGAATAAGGTTCGGAGAGATCGTTA 660
consensus_8123#1      GGCCAGTTGTATATAAAGTATCGATAAGTATATATGGAATAAGGTTCGGAGAGATCGTTA 279
                      *******************************    *************************

consensus_8123#0      GCAATGAGATTGATAATGCTATTTAAATCTGATTCGCCAATATACTGCCGAAACGTGATT 720
consensus_8123#1      GCAATGAGATTGATAATGCTATTTAA---------------------------------- 305
                      **************************                                  

consensus_8123#0      TTATTTTGCATATCTTTGAATAGAGGTTCACATGGTTGAAAATTCTCTTCACTTTGACAT 780
consensus_8123#1      ------------------------------------------------------------
                                                                                  

consensus_8123#0      TTTTCCGTCAGAACGACTTTGTTAAGCTCGGTAGAAAGTTTAACATCTTCTGACATCTCC 840
consensus_8123#1      ------------------------------------------------------------
                                                                                  

consensus_8123#0      AGTTGCCTACACGTGTTACTTCCTCAAGGTCACGCA 876
consensus_8123#1      ------------------------------------