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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1538 fasta sequence
[TCTTCAGAAACGGCTGATTCGTTAGATCGTGGTGGTTGTGAAGGTCTACTTCGTGCAGCTCTGCGCCTAAGCAATCCCCCACCACTTTCATTGTCATATAAAAAAATCAGCAATATTACTACCACAACTAACATCACTGATAATACTATCACTGTTTCAAATGACGAATGGAATTGTAAATTTTTACCATTCTCAAATTCAAAATATTATTTATTTCAAAAGTTGGTCAGTGCAAACAGTTTGCAAAATAGTTTATGTGCCCAACTAATTTTAAGTTTAGGATTTACATTGGATCCAAGTTTAATTGAATACTTATTATTCTATCTGTGCTGCTGGAGGTGTGTAAAAACGAAAACCAATCCCAATGAAAATTCATTTACATCACGAGCCTCAGTGAAATCCGCCAAATCATCATCATTTGCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACAACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATTCTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAATCATCAAATGGATTCAACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGCCTAGTTTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGAAATCTGCTATGGTTAGTGAATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGAGCACAGCTAGGCGAAATCGTGAACATGATGCTGAAAAATGATGATCTTCAATGTTTAGACTTGCTGATTAGTCTTTGTGAATGTATATTCTGTACATTTCGGTTTCCTCCAACTAATCGTTTGTCACCTTCAACCACCACCACACTTAATCAATCTATGAAGCTAAGTGAATCAAGCCATTATTACCACTTGACACGGTTTCGTGATGGATCAAAAAACTCTGGTGGTTTAAATACTAATGGTCATCTGCGCTATCATTATGGTAACCATCAAACATTCGGCGTAATACTTCTATCACCTACCCAATGTATGCAATTAGCTAATAGTTTTGTACAGTTAACATCTCGATTGATGTTCATGATGAATGATGCGAACTTACCCAGTGAATCATCATCATTGTCTTCGTGTACCCATTTGTATGTATTTGGTCGATCTCGAAATCTATTGAATTTATTATTCAGCACTATTCAATCAACAATTTTCCGTTCAGCTATTATGAGGTTAATTCCAAAAGTGATAATGTCTAGTCGTTTATATCCGTACACGGATGATTTATTAAAAAATAATATGCCTACAATGGATTATTTTAATGCCAATCTATTCGATTCAAATCTTTCATATTTACTACCAAATTGTTT]
[-] EMBL CD153041 [TCTTCAGAAACGGCTGATTCGTTAGATCGTGGTGGTTGTGAAGGTCTACTTCGTGCAGCTCTGCGCCTAAGCAATCCCCCACCACTTTCATTGTCATATAAAAAAATCAGCAATATTACTACCACAACTAACATCACTGATAATACTATCACTGTTTCAAATGACGAATGGAATTGTAAATTTTTACCATTCTCAAATTCAAAATATTATTTATTTCAAAAGTTGGTCAGTGCAAACAGTTTGCAAAATAGTTTATGTGCCCAACTAATTTTAAGTTTAGGATTTACATTGGATCCAAGTTTAATTGAATACTTATTATTCTATCTGTGCTGCTGGAGGTGTGTAAAAACGAAAACCAATCCCAATGAAAATTCATTTACATCACGAGCCTCAGTGAAATCCGCCAAATCATCATCATTTGCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCAT ]
[-] EMBL CD153129 [ TCATATAAGAGAATCGCCAATATTACTACCACAACTAACATCACTGATAATACTATCACTGTTTCAAATGACGAATGGAATTGTAAATTTTTACCATTCTCAAATTCAAAATATTATTTATTTCAAAAGTTGGTCAGTGCAAACAGTTTGCAAAATAGTTTATGTGCCCAACTAATTTTAAGTTTAGGATTTACATTGGATCCAAGTTTAATTGAATACTTATTATTCTATCTGTGCTGCTGGAGGTGTGTAGAAACGAAAACCAATCCCAATGAAAATTCATTTACATCACGAGCCTCAGTGAAATCCGCCAAATCATCATCATTTGCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCAT ]
[+] EMBL CD167797 [ CTCAGTGAAATCCGCCAAATCATCATCATTTGCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACAACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATTCTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAATCATCAAATGGATTCAACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGCCTAGTTTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGAAATCTGCTATGGTTAGTGAATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGAGCACAGCTAGGCGAAATCGTGAACATGATGCTGAAAAATGATGATCTTCAATGTTTAGACTTGCTGATTAGTCTTTGTGAATGTATA ]
[+] EMBL AW017215 [ CAATCGTGTCGATACATAATAAATATTTACTAATGAGTAATCATCAAATGGATTCAACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGTCTAGTTTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGTAATCTGCTATGGTTAGTGAATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGAGCACAGCTAGGCGAAATCGTGAACATGATGCTGAAAAATGATGATCTTCAATGTTTAGACTTGCTGATTAGTCTTTGTGAATGTATATTCTGTACATTTCGGTTTCCTCCAACTAATCGTTTGTCACCTTCAACCACCACCACACTTAATCAATCTATGAAGCTAAGTGAATCAAGCCATTATTACCACTTGACACGGTTTCGTGATGGATCAAAAAACTCTGGTGGTTTAAATACTAATGGTCATCTGCG ]
[-] EMBL CD123607 [ CAACTAATCGTTTGTCACTTTCAACCACCACCACACTTAATCAATCTATGAAGCTAAGTGAATCAAGCCATTATTACCACTTGACACGGTTTCGTGATGGATCAAAAAACTCTGGTGTTTTAAATACTAATGGTCATCTGCGCTATCATTATGGTAACCATCAAACATTCGGCGTAATACTTCTATCACCTACCCAATGTATGCAATTAGCTAATAGTTTTGTACAGTTAACATCTCGATTGATGTTCATGATGAATGATGCGAACTTACCCAGTGAATCATCATCATTGTCTTCGTGTACCCATTTGTATGTATTTGGTCGATCTCGAAATCTATTGAATTTATTATTCAGCACTATTCAATCAACAATTTTCCGTTCAGCTATTATGAGGTTAATTCCAAAAGTGATAATGTCTAGTCGTTTATATCCGTACACGGATGATTTATTAAAAAATAATATGCCTACAATGGATTATTTTAATGCCAATCTATTCGATTCAAATCTTTCATATTTACTACCAAATTGTTT]
consensusID : consensus_8143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[TTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACAACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATTCTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAATCATCAAATGGATTCGACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGTCTAGTTTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGTAATCTGCTATGGTTAGTGAATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGAGCACAGCTAGGCGAAATCGTGACATGATGCTGAAAAATGATGATCTTCAATGTTTAGACTTGCTGATTAGTCTTTGTGAATGTATATTCTGCATTTCGGCGTGTCTGCGGGATCCTC]
[-] EMBL CD125828 [TTTATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACAACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATTCTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAATCATCAAATGGATTCGACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGTCTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGTCTAGTTTAGATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGTAATCTGCTATGGTTAGTGAATAAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGAGCACAGCTAGGCGAAATCGTGACATGATGCTGAAAAATGATGATCTTCAATGTTTAGACTTGCTGATTAGTCTTTGTGAATGTATATTCTGCATTTCGGCGTGTCTGCGGGATCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8143#0 TCTTCAGAAACGGCTGATTCGTTAGATCGTGGTGGTTGTGAAGGTCTACTTCGTGCAGCT 60
consensus_8143#1 ------------------------------------------------------------
consensus_8143#0 CTGCGCCTAAGCAATCCCCCACCACTTTCATTGTCATATAAAAAAATCAGCAATATTACT 120
consensus_8143#1 ------------------------------------------------------------
consensus_8143#0 ACCACAACTAACATCACTGATAATACTATCACTGTTTCAAATGACGAATGGAATTGTAAA 180
consensus_8143#1 ------------------------------------------------------------
consensus_8143#0 TTTTTACCATTCTCAAATTCAAAATATTATTTATTTCAAAAGTTGGTCAGTGCAAACAGT 240
consensus_8143#1 ------------------------------------------------------------
consensus_8143#0 TTGCAAAATAGTTTATGTGCCCAACTAATTTTAAGTTTAGGATTTACATTGGATCCAAGT 300
consensus_8143#1 ------------------------------------------------------------
consensus_8143#0 TTAATTGAATACTTATTATTCTATCTGTGCTGCTGGAGGTGTGTAAAAACGAAAACCAAT 360
consensus_8143#1 ------------------------------------------------------------
consensus_8143#0 CCCAATGAAAATTCATTTACATCACGAGCCTCAGTGAAATCCGCCAAATCATCATCATTT 420
consensus_8143#1 ------------------------------------------------------------
consensus_8143#0 GCACAACTTACGTTTTGTCCATTGATGTTATTTTTTCCTTTATTAAATGAAATACAATTT 480
consensus_8143#1 ---------------------------------------------------------TTT 3
***
consensus_8143#0 ATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACA 540
consensus_8143#1 ATCTGGGTAGCTAGAACATCTTCACGACCGCCACCATTAACGGCAACAACAGCATCAACA 63
************************************************************
consensus_8143#0 ACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATT 600
consensus_8143#1 ACTACTGGCACATTAACGATTCCTCCAGTTCAACTTACCGATGCACTAGTAACTGATATT 123
************************************************************
consensus_8143#0 CTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAAT 660
consensus_8143#1 CTTCGTCCATCAATCTTCCCAATCGTGTCGATACATAATAAATATTTACTAATGAGTAAT 183
************************************************************
consensus_8143#0 CATCAAATGGATTCAACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGT 720
consensus_8143#1 CATCAAATGGATTCGACTAATAATAATAATGCTTCTTTATCATTTCTTTACCCAAATGGT 243
************** *********************************************
consensus_8143#0 CTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGCCTAGTTTA 780
consensus_8143#1 CTCCTGTACATACACCAACTTCTTGCCAATAAATACTTTCCTCTGTTGTGGTCTAGTTTA 303
*************************************************** ********
consensus_8143#0 GATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGAAATCTGCTATGGTTAGTGAAT 840
consensus_8143#1 GATAAAGGTGATCATGAATTTCGTATTTCCGTATTACGTAATCTGCTATGGTTAGTGAAT 363
************************************** *********************
consensus_8143#0 AAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGA 900
consensus_8143#1 AAAGAGCTTATTTTAATTGGAAAGAATTCTGGTCACCCACGTATTCTATTTGCTTTGGGA 423
************************************************************
consensus_8143#0 GCACAGCTAGGCGAAATCGTGAACATGATGCTGAAAAATGATGATCTTCAATGTTTAGAC 960
consensus_8143#1 GCACAGCTAGGCGAAATCGTGA-CATGATGCTGAAAAATGATGATCTTCAATGTTTAGAC 482
********************** *************************************
consensus_8143#0 TTGCTGATTAGTCTTTGTGAATGTATATTCTGTACATTTCGGTTTCCTCCAACTAATCGT 1020
consensus_8143#1 TTGCTGATTAGTCTTTGTGAATGTATATTCTG--CATTTCGGCGTG-TCTGCGGGATCCT 539
******************************** ******** * ** *** *
consensus_8143#0 TTGTCACCTTCAACCACCACCACACTTAATCAATCTATGAAGCTAAGTGAATCAAGCCAT 1080
consensus_8143#1 C----------------------------------------------------------- 540
consensus_8143#0 TATTACCACTTGACACGGTTTCGTGATGGATCAAAAAACTCTGGTGGTTTAAATACTAAT 1140
consensus_8143#1 ------------------------------------------------------------
consensus_8143#0 GGTCATCTGCGCTATCATTATGGTAACCATCAAACATTCGGCGTAATACTTCTATCACCT 1200
consensus_8143#1 ------------------------------------------------------------
consensus_8143#0 ACCCAATGTATGCAATTAGCTAATAGTTTTGTACAGTTAACATCTCGATTGATGTTCATG 1260
consensus_8143#1 ------------------------------------------------------------
consensus_8143#0 ATGAATGATGCGAACTTACCCAGTGAATCATCATCATTGTCTTCGTGTACCCATTTGTAT 1320
consensus_8143#1 ------------------------------------------------------------
consensus_8143#0 GTATTTGGTCGATCTCGAAATCTATTGAATTTATTATTCAGCACTATTCAATCAACAATT 1380
consensus_8143#1 ------------------------------------------------------------
consensus_8143#0 TTCCGTTCAGCTATTATGAGGTTAATTCCAAAAGTGATAATGTCTAGTCGTTTATATCCG 1440
consensus_8143#1 ------------------------------------------------------------
consensus_8143#0 TACACGGATGATTTATTAAAAAATAATATGCCTACAATGGATTATTTTAATGCCAATCTA 1500
consensus_8143#1 ------------------------------------------------------------
consensus_8143#0 TTCGATTCAAATCTTTCATATTTACTACCAAATTGTTT 1538
consensus_8143#1 --------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||