cluster # 8151

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Schistosoma mansoni
cluster # 8151 cluster # 8151 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8151#0 length = 775 sequences # 5

consensus_8151#1 length = 272 sequences # 1

consensusID : consensus_8151#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 775
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTGGATAAAACCGTATTTATTTTTATTTGAATACAATAACAGTAAACATTTGCATTATTGTTCAGTAACTGACGAATATGAATTATGCTTCCATTGGTTGAATGTAAAACTGATCAAATTGAGCTGTCATTTGGATAGCTTGTGAATATAAATCGCTGTCAAACTTTGCACTTGCTTCCTGAGAGAAAACGACCGGTT-CCGCTGTAGCATTGA-TTTCTGTACCTTGCACATTGCTTACGCGACCTTGAACTTCTATAACTCGATTTTCTGGAGAAGCCTGGAGAGGCGAGAGAAGATTGCAATCGATTTCCCGCCCATCTGCACAGCGTATATGTATTCTTTG-TCC-TGAAGGGGCAACACGAAGAGCAGTCCCAACTATACATACATCGCGACCTACTAGATTAGGAAGCATTGAACCCGTAACACGGAATCGAGCTATGGGCTTTTGATCAGCAGAATCC-TGCAACAAAATGTAGCTAGTAACAAAAAAACTAGAGCCAGCGAACAGAAAGAAGAAATCATGAAGTAATTGTATTTCAAGAGATCTGATTACACTACACAGCAAAACCAAGTTTTCTCAAACATTCTTTATGCTCCATGATCACATCTGCACACTTTTCCTCACCATACATCAGGACGCACTGATCACGCTTGAGACGTGCTTCTGGACATGCACAACAGGGTTTAAGAGGTTTTCCTTCGTTGTCCAAAGGTATTTTTGAAGCACGCTGACTGTTCAGTTTCTCCATGCTCGATG]

[+] EMBL AI395325             [TTTTTTTTTTTTTTTTTTTTGGATAAAACCGTATTTATTTTTATTTGAATACAATAACAGTAAACATTTGCATTATTGTTCAGTAACTGACGAATATGAATTATGCTTCCATTGGTTGAATGTAAAACTGATCAAATTGAGCTGTCATTTGGATAGCTTGTGAATATAAATCGCTGTCAAACTTTGCACTTGCTTCCCGAGAAAAAACCAACGGGT TCGCTGGAACAATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AI395313             [ TTTTTTTTTTTTTTTTTTTGGATAAAACCGTATTTATTTTTATTTGAATACAATAACAGTAAACATTTGCATTATTGTTCAGTAACTGACGAATATGAATTATGCTTCCATTGGTTGAATGTAAAACTGATCAAATTGAGCTGTCATTTGGATAGCTTGTGAATATAAATCGCTGTCAAACTTTGCACTTGCTTCCTGAGAGAAAACGACCGGTT CCGCTGTAGCATTGA TTTCTGTACCTTGCACATTGCTTACGCGACCTTGAACTTCTATAACTCGATTTTCTGGAGAAGCCTGGAGAGGCGAGAGAAGATTGCAATCGATTTCCCGCCCATCTGCACAGCGTATATGTATTCTTTG GCC TGAAGGGGCAACACGAAGAGCAGTCCCAACTATACATACATCGCGACCTACTAGATTAGGAAGCATTGAACCCGTAACACGGAATCGAGCTATGGGCTTTTGATTAGCAGAAT                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AI395034             [    TTTTTTTTTTTTTTTTGGATAAAACCGTATTTATTTTTATTTGAATACAATAACAGTAAACATTTGCATTATTGTTCAGTAACTGACGAATATGAATTATGCTTCCATTGGTTGAATGTAAAACTGATCAAATTGAGCTGTCATTTGGATAGCTTGTGAATATAAATCGCTGTCAAACTTTGCACTTGCTTCCTGAGAGAAAACGACCGGTT CCGCTGTAGCATTGA TTTCTGTACCTTGCACATTGCTTACGCGACCTTGAACTTCTATAACTCGATTTTCTGGAGAAGCCTGGAGAGGCGAGAGAAGATTGCAATCGATTTCCCGCCCATCTGCACAGCGTATATGTA   TTTG TCCTTGAA GGGCAACACGAAGAGCAGTCTCAACTATACATACATCGCGACCTACTAGATTACGAAGCATTGAACCCGTAACACGGATCCNAGCTA GGGCTTTTGATCAGAAGct                                                                                                                                                                                                                                                                                                            ]
[-] EMBL AA559814             [                                                                                                                                                                                                        anGAAAACGACCGGTTCCCGCTGTAGCATTGATTTTCTGTACCTTGCACATTGCTTACGCGACCTTGAACTTCTATAACTCGATTTTCTGGAGAAGCCTGGAGAGGCGAGAGAAGATTGCAATCGATTTCCCGCCCATCTGCACAGCGTATATGTATTCTTTGTTCC TGAAGGGGCAACACGAAGAGCAGTCCCAACTATACATACATCGCGACCTACTAGATTAGGAAGCATTGAACCCGTAACACGGAATCGAGCTATGGGCTTTTGATCAGCAGAATCCATGCAACAAA                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD119778             [                                                                                                                                                                                                                                                                                             TTCTGGAGAAGCCTGGAGAGGCGAGAGAAGATTGCAATCGATTTCCCGCCCATCTGCACAGCGTATATGTATTCTTTG TCC TGAAGGGGCAACACGAAGAGCAGTCCCAACTATACATACATCGCGACCTACTAGATTAGGAAGCATTGAACCCGTAACACGGAATCGAGCTATGGGCTTTTGATCAGCAGAATCC TAAAACGAAATGTAGCTAGTAACAAAAAAACTAGAGCCAGCGAACAGAAAGAAGAAATCATGAAGTAATTGTATTTCAAGAGATCTGATTACACTACACAGCAAAACCAAGTTTTCTCAAACATTCTTTATGCTCCATGATCACATCTGCACACTTTTCCTCACCATACATCAGGACGCACTGATCACGCTTGAGACGTGCTTCTGGACATGCACAACAGGGTTTAAGAGGTTTTCCTTCGTTGTCCAAAGGTATTTTTGAAGCACGCTGACTGTTCAGTTTCTCCATGCTCGATG]




>consensus_8151#0
TTTTTTTTTTTTTTTTTTTTGGATAAAACCGTATTTATTTTTATTTGAATACAATAACAG
TAAACATTTGCATTATTGTTCAGTAACTGACGAATATGAATTATGCTTCCATTGGTTGAA
TGTAAAACTGATCAAATTGAGCTGTCATTTGGATAGCTTGTGAATATAAATCGCTGTCAA
ACTTTGCACTTGCTTCCTGAGAGAAAACGACCGGTTCCGCTGTAGCATTGATTTCTGTAC
CTTGCACATTGCTTACGCGACCTTGAACTTCTATAACTCGATTTTCTGGAGAAGCCTGGA
GAGGCGAGAGAAGATTGCAATCGATTTCCCGCCCATCTGCACAGCGTATATGTATTCTTT
GTCCTGAAGGGGCAACACGAAGAGCAGTCCCAACTATACATACATCGCGACCTACTAGAT
TAGGAAGCATTGAACCCGTAACACGGAATCGAGCTATGGGCTTTTGATCAGCAGAATCCT
GCAACAAAATGTAGCTAGTAACAAAAAAACTAGAGCCAGCGAACAGAAAGAAGAAATCAT
GAAGTAATTGTATTTCAAGAGATCTGATTACACTACACAGCAAAACCAAGTTTTCTCAAA
CATTCTTTATGCTCCATGATCACATCTGCACACTTTTCCTCACCATACATCAGGACGCAC
TGATCACGCTTGAGACGTGCTTCTGGACATGCACAACAGGGTTTAAGAGGTTTTCCTTCG
TTGTCCAAAGGTATTTTTGAAGCACGCTGACTGTTCAGTTTCTCCATGCTCGATG

consensusID : consensus_8151#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [GAATCGAGCTATGGGCTTTTGATCAGCAGAATCCTANAACGAAATGTAGCTAGTAACAAAAAAAACTACACAGCAAAACCAAGTTTTCTCAAACATTCTTTATGCTCCATGATCACATCTGCACACTTTTCCTCACCATACATCAGGACGCACTGATCACGCTTGAGACGTGTTTCTGGACATGCACAACAGGGTTTAAGAGGTTTTCCTTCGTTGTCCAAAGGTATTTTTGAAGCAGACTGACTGTTCACCTCGTGCCGAATCTTGGCCGC]

[-] EMBL CD077521             [GAATCGAGCTATGGGCTTTTGATCAGCAGAATCCTANAACGAAATGTAGCTAGTAACAAAAAAAACTACACAGCAAAACCAAGTTTTCTCAAACATTCTTTATGCTCCATGATCACATCTGCACACTTTTCCTCACCATACATCAGGACGCACTGATCACGCTTGAGACGTGTTTCTGGACATGCACAACAGGGTTTAAGAGGTTTTCCTTCGTTGTCCAAAGGTATTTTTGAAGCAGACTGACTGTTCACCTCGTGCCGAATCTTGGCCGC]




>consensus_8151#1
GAATCGAGCTATGGGCTTTTGATCAGCAGAATCCTANAACGAAATGTAGCTAGTAACAAA
AAAAACTACACAGCAAAACCAAGTTTTCTCAAACATTCTTTATGCTCCATGATCACATCT
GCACACTTTTCCTCACCATACATCAGGACGCACTGATCACGCTTGAGACGTGTTTCTGGA
CATGCACAACAGGGTTTAAGAGGTTTTCCTTCGTTGTCCAAAGGTATTTTTGAAGCAGAC
TGACTGTTCACCTCGTGCCGAATCTTGGCCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8151#0      TTTTTTTTTTTTTTTTTTTTGGATAAAACCGTATTTATTTTTATTTGAATACAATAACAG 60
consensus_8151#1      ------------------------------------------------------------
                                                                                  

consensus_8151#0      TAAACATTTGCATTATTGTTCAGTAACTGACGAATATGAATTATGCTTCCATTGGTTGAA 120
consensus_8151#1      ------------------------------------------------------------
                                                                                  

consensus_8151#0      TGTAAAACTGATCAAATTGAGCTGTCATTTGGATAGCTTGTGAATATAAATCGCTGTCAA 180
consensus_8151#1      ------------------------------------------------------------
                                                                                  

consensus_8151#0      ACTTTGCACTTGCTTCCTGAGAGAAAACGACCGGTTCCGCTGTAGCATTGATTTCTGTAC 240
consensus_8151#1      ------------------------------------------------------------
                                                                                  

consensus_8151#0      CTTGCACATTGCTTACGCGACCTTGAACTTCTATAACTCGATTTTCTGGAGAAGCCTGGA 300
consensus_8151#1      ------------------------------------------------------------
                                                                                  

consensus_8151#0      GAGGCGAGAGAAGATTGCAATCGATTTCCCGCCCATCTGCACAGCGTATATGTATTCTTT 360
consensus_8151#1      ------------------------------------------------------------
                                                                                  

consensus_8151#0      GTCCTGAAGGGGCAACACGAAGAGCAGTCCCAACTATACATACATCGCGACCTACTAGAT 420
consensus_8151#1      ------------------------------------------------------------
                                                                                  

consensus_8151#0      TAGGAAGCATTGAACCCGTAACACGGAATCGAGCTATGGGCTTTTGATCAGCAGAATCCT 480
consensus_8151#1      -------------------------GAATCGAGCTATGGGCTTTTGATCAGCAGAATCCT 35
                                               ***********************************

consensus_8151#0      GCAACAAAATGTAGCTAGTAACAAAAAAACTAGAGCCAGCGAACAGAAAGAAGAAATCAT 540
consensus_8151#1      ANAACGAAATGTAGCTAGTAACAAAAAAA------------------------------- 64
                        *** ***********************                               

consensus_8151#0      GAAGTAATTGTATTTCAAGAGATCTGATTACACTACACAGCAAAACCAAGTTTTCTCAAA 600
consensus_8151#1      -------------------------------ACTACACAGCAAAACCAAGTTTTCTCAAA 93
                                                     *****************************

consensus_8151#0      CATTCTTTATGCTCCATGATCACATCTGCACACTTTTCCTCACCATACATCAGGACGCAC 660
consensus_8151#1      CATTCTTTATGCTCCATGATCACATCTGCACACTTTTCCTCACCATACATCAGGACGCAC 153
                      ************************************************************

consensus_8151#0      TGATCACGCTTGAGACGTGCTTCTGGACATGCACAACAGGGTTTAAGAGGTTTTCCTTCG 720
consensus_8151#1      TGATCACGCTTGAGACGTGTTTCTGGACATGCACAACAGGGTTTAAGAGGTTTTCCTTCG 213
                      ******************* ****************************************

consensus_8151#0      TTGTCCAAAGGTATTTTTGAAGCACGCTGACTGTTCAGTTTCTCCATGCTCGATG---- 775
consensus_8151#1      TTGTCCAAAGGTATTTTTGAAGCAGACTGACTGTTCACCTCGTGCCGAATCTTGGCCGC 272
                      ************************  ***********  *  * *    **   *