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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8167#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 828 fasta sequence
[TGGCCAANAATTTGGCACGAGGG-GCGCGACGGCATTTAAAGAGAAAAGTACTGGGTTGAAGTCCTGGAGTGGACATCGACTCTGGAATTCGGGGACATCCAGCTAACGTGTTCCAACTAAGGCGAAACGCGCGTCCTAGATTCCACTGCTGACCACCATCCATCTCTGCTTAAAATGCTTCTGATTTAATGGCAATTTCGAGGCGATCCGCACGAAATGCACATGTGCTGAAAGATACAAATCAGTTGGAGTCCTAAATATCAATCAGAAAATCCAAACAACTAATGTGTGTGAATGGAAATAGTTAATTGGATATATCATTGCTTTTTGATAGTTATCTTTTAATTCACCTGTTACTGCTCAGTAATGATCTGAAAATGTATTTATCTTCTCAATCATCGTTTTAATTTTACCTCTCGCACTAGATAATAAATTAATTGTGTTGAAATACTGTCTATTTTCTTACTTAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTATTCAAAAGAAGAAAATTATTTATGTTACTTGACTTTTCTTACTGGCAACTCAT-TGTTGATGTCCTCATTTATTTGATA-TTTCGTTGTTTGTATATGATTTTAGTTGACCTGAAGACAATAATTTCAAAATCTACTTCTGTTNTATTCTTTCCTCACTGATTCTATTGTAATAAATTCTAACTCGATCATAANTGGTTTNTAGTTCAAA-CACTATCATAGT-AAATATAAACACATGT-ATGAAATTTG-TCCA-TTTCTTGTNTG-ATTGGC-TC-ATGNNTAACGG-TGA-TTGT-AATAAAAAAATAGC]
[+] EMBL CD080865 [TGGCCAANAATTTGGCACGAGGG GCGCGACGGCATTTAAAGAGAAAAGTACTGGGTTGAAGTCCTGGAGTGGACATCGACTCTGGAATTCGGGGACATCCAGCTAACGTGTTCCAACTAAGGCGAAACGCGCGTCCTAGATTCCACTGCTGACCACCATCCATCTCTGCTTAAAATGCTTCTGATTTAATGGCAATTTCGAGGCGATCCGCACGAAATGCACATGTGCTGAAAGATACAAATCAGTTGGAGTCCTAAATATCAATCAGAAAATCCAAACAACTAATGTGTGTGAATGGAAATAGTTAATTGGATATATCATTGCTTTTTGATAGTTATCTTTTAATTCACCTGTTACTGCTCAGTAATGATCTGAAAATGTATTTATCTTCTCAATCATCGTTTTAATTTTACCTCTCGCACTAGATAATAAATTAATTGTGTTGAAATACTGTCTATTTTCTTACTTAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTATTCAAAAGAAGAAAATTATTTATGTTACTTGACTTTTCTTACTGGCAACTCATNTGTTGATGTCCTCATTTATTTGATANTTTCGTTGTTTGTATATGATTTTAGTTGACCTGAAGACAATAATTTCAAAATCTACTTCTGTTNTATTCTTTCCTCACTGATTCTATTGTAATAAATTCTAACTCGATCATAANTGGTTTNTAGTTCAAA CACTATCATAGT AAATATAAACACATGT ATGAAATTTG TCCA TTTCTTGTNTG ATTGGC TC ATGNNTAACGG TGA TTGT AATAAAAA ]
[+] EMBL CD080763 [gaGCCAA GATTCGGCACGAGGGCGAGCGACGGCATTTAAAGAGAAAAGTACTGGGTTGAAGTCCTGGAGTGGACATCGACTCTGGAATTCGGGGACATCCAGCTAACGTGTTCCAACTAAGGCGAAACGCGCGTCCTAGATTCCACTGCTGACCACCATCCATCTCTGCTTAAAATGCTTCTGATTTAATGGCAATTTCGAGGCGATCCGCACGAAATGCACATGTGCTGAAAGATACAAATCAGTTGGAGTCCTAAATATCAATCAGAAAATCCAAACAACTAATGTGTGTGAATGGAAATAGTTAATTGGATATATCATTGCTTTTTGATAGTTATCTTTTAATTCACCTGTTACTGCTCAGTAATGATCTGAAAATGTATTTATCTTCTCAATCATCGTTTTAATTTTACCTCTCGCACTAGATAATAAATTAATTGTGTTGAAATACTGTCTATTTTCTTACTTAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTATTCAAAAGAAGAAAATTATTTATGTTACTTGACTTTTCTTACTGGCAACTCAT TGTTGATGTCCTCATTTATTTGATA TTTCGTTGTTTGTATATGATTNTAGTTGACCTGAAGACAATAATTTC AAATCTA ]
[-] EMBL CD074687 [ TTATCTTCTCAATCATCGTTTTAATTTTCCCTCTCGCACTAGATAATAAATTAATTGTGTTGAAATACTGTCTATTTTCTTACTTAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTATTCAAAAAAAGAAAATTATTTATGTTACTTGACTTTTCTTACTGGCAACTCAT TGTTGATGTCCTCATTTATTTGATA TTTCGTTGTTTGTATATGATTTTAGTTGCCCTGAAGCCAATAATTTCAAAATCTACTTCTGTTTTATTCTTTCCCCACTGATTCTATTGTAATAAATTCTAACTCGATCATAATTGGTTT TAGTTCAAACCCCTATCATAGTAAAATATAAACCCATGTAATG AATTTGTTCCATTTTCTTGTTTGTATTGGCTTCAATGTTTACCGGTTGATTTGTAAATAAAAAAATAGC]
consensusID : consensus_8167#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence
[TACGTGAGTATCAGTTGTCCTTCATCATCAAAACTGCGGTTAAACAGATTTACCTCGTGCTAACGTCAACTTTTGGCTGGCAAGTTACTCATGACGACTAGCGGCCACATTGCAACTTAATCGGTAGAATTTGATCAGCACTTGAANNNNNNGCAAACAAGACAATCATCATTCATCTCTGCTTAAAATGCTTCTGATTTAATGGCAATTTCGAGGCGATCCGCACGAAATGCACATGTGCTGAAAGATACAAATCAGTTGGAGTCCTAAATATCAATCAGAAAATCCAAACAACTAATGTGNNNNNNNNNNNNNNNTTAATTGGATATATCATTGCTTTTTGATAGTTATCTTTTAATTCACCTGTTACTGCTCAGTAATGATCTGAAAATGTATTTATCTTCTCAATCATCGTTTTAATTTTACCTCTCGCACTAGATAATAAATTAATTGTGTTGAAATACTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTATTCAAAAGAAGAAAATTATTTATGTTACTTGACTTTTCTTACTGGCAACTCATNGGNTGATGTCCTCATTTATTTGATATTTTCGTTGTTTGTATATGATTTTAGTTGACCTGAAGAACATATTTCAAATCTATCTACTCGATCATATGGGTNTAGTTCANACCTATCTAGTAAATATAACCATGTATGAATTGTCCATTTCTGGNTGATGGGCTCATGTTACGGTGATTGTATAAAAA]
[+] EMBL CD080942 [TACGTGAGTATCAGTTGTCCTTCATCATCAAAACTGCGGTTAAACAGATTTACCTCGTGCTAACGTCAACTTTTGGCTGGCAAGTTACTCATGACGACTAGCGGCCACATTGCAACTTAATCGGTAGAATTTGATCAGCACTTGAANNNNNNGCAAACAAGACAATCATCATTCATCTCTGCTTAAAATGCTTCTGATTTAATGGCAATTTCGAGGCGATCCGCACGAAATGCACATGTGCTGAAAGATACAAATCAGTTGGAGTCCTAAATATCAATCAGAAAATCCAAACAACTAATGTGNNNNNNNNNNNNNNNTTAATTGGATATATCATTGCTTTTTGATAGTTATCTTTTAATTCACCTGTTACTGCTCAGTAATGATCTGAAAATGTATTTATCTTCTCAATCATCGTTTTAATTTTACCTCTCGCACTAGATAATAAATTAATTGTGTTGAAATACTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTATTCAAAAGAAGAAAATTATTTATGTTACTTGACTTTTCTTACTGGCAACTCATNGGNTGATGTCCTCATTTATTTGATATTTTCGTTGTTTGTATATGATTTTAGTTGACCTGAAGAACATATTTCAAATCTATCTACTCGATCATATGGGTNTAGTTCANACCTATCTAGTAAATATAACCATGTATGAATTGTCCATTTCTGGNTGATGGGCTCATGTTACGGTGATTGTATAAAAA]
consensusID : consensus_8167#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence
[TTACTTAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCCCGTACTGATAGTTATTTATTCAAAAAAAGAAAATTATTTATGTTACTTGACTTTTTTTACGGGCAACTCATGGTTGAGGCCCCCATTTATTTGATATTTCGTGGTTGGAAAATGATTTTAGTTGCCCTGAAGCCAATAATTTCAAAATCTACTTCTGTTTTATTCTTTCCCCCCTGATTCTATGGTAATAAATTCTAACTCGATCATAATGGGTTTTAGTTCAAACCCCTATCATAGTAAAATATAACCCCATGTAATGAATTGGTCCCATTTTCTGGTTGGTATGGGCTCCAATGTTTACCGGTTGATTTGTAAATAAAAAAATAGC]
[-] EMBL CD074776 [TTACTTAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCCCGTACTGATAGTTATTTATTCAAAAAAAGAAAATTATTTATGTTACTTGACTTTTTTTACGGGCAACTCATGGTTGAGGCCCCCATTTATTTGATATTTCGTGGTTGGAAAATGATTTTAGTTGCCCTGAAGCCAATAATTTCAAAATCTACTTCTGTTTTATTCTTTCCCCCCTGATTCTATGGTAATAAATTCTAACTCGATCATAATGGGTTTTAGTTCAAACCCCTATCATAGTAAAATATAACCCCATGTAATGAATTGGTCCCATTTTCTGGTTGGTATGGGCTCCAATGTTTACCGGTTGATTTGTAAATAAAAAAATAGC]
consensusID : consensus_8167#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence
[TTCCTAGGAATCTATTGACTATACGTGAGTATACAGTTGTCCTTCATCATCAAAACTGCGGTTAAACAGATTTACCTCGTGCTAACGTCAACTTTTGGCTGGCAAGTTACTCATGACGACTAGCGGCCACATTGCAACTTAATCGGTAGAATTTGATCAGCACTTGAAGACTTGGCAAACAAGACAATCATCATTCAGCTCTAGTCAGAGATGGATTGTGGCTAGCACTGGGATTCAGAATGCACCTTTTGTCTCATTTGGGACTCGTCAGCTGGATCACTATGGGGAGCGACGGCATTTAAAGAGAAAAGTACTGGGTTGAAGTCCTGGAGTGGA]
[+] EMBL BG931934 [TTCCTAGGAATCTATTGACTATACGTGAGTATACAGTTGTCCTTCATCATCAAAACTGCGGTTAAACAGATTTACCTCGTGCTAACGTCAACTTTTGGCTGGCAAGTTACTCATGACGACTAGCGGCCACATTGCAACTTAATCGGTAGAATTTGATCAGCACTTGAAGACTTGGCAAACAAGACAATCATCATTCAGCTCTAGTCAGAGATGGATTGTGGCTAGCACTGGGATTCAGAATGCACCTTTTGTCTCATTTGGGACTCGTCAGCTGGATCACTATGGGGAGCGACGGCATTTAAAGAGAAAAGTACTGGGTTGAAGTCCTGGAGTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8167#0 ----TGGCCAANAATTTGGCACGAGGGGCGCGACGGCATTTAAAGAGAAAAGTACTGGGT 56
consensus_8167#2 ------------------------------------------------------------
consensus_8167#1 TACGTGAGTATCAGTTGTCCTTCATCATCAAAACTGCGGTTAAACAGATTTACCTCGTGC 60
consensus_8167#3 ------------------------------------------------------------
consensus_8167#0 TGAAGTC----CTGGAGTGGACATCGACTCTGGA--ATTCGGGGACA---TCCAGCTAAC 107
consensus_8167#2 ------------------------------------------------------------
consensus_8167#1 TAACGTCAACTTTTGGCTGGCAAGTTACTCATGACGACTAGCGGCCACATTGCAACTTAA 120
consensus_8167#3 ------------------------------------------------------------
consensus_8167#0 GTGTTCCAACTAAGGCGAAACGCGCGTCCTAGATTCCACTGCTGACCACCATCCATCTCT 167
consensus_8167#2 ------------------------------------------------------------
consensus_8167#1 TCGGTAGAATTTGATCAGCACTTGAANNNNNNGCAAACAAGACAATCATCATTCATCTCT 180
consensus_8167#3 ------------------------------------------------------------
consensus_8167#0 GCTTAAAATGCTTCTGATTTAATGGCAATTTCGAGGCGATCCGCACGAAATGCACATGTG 227
consensus_8167#2 ------------------------------------------------------------
consensus_8167#1 GCTTAAAATGCTTCTGATTTAATGGCAATTTCGAGGCGATCCGCACGAAATGCACATGTG 240
consensus_8167#3 ------------------------------------------------------------
consensus_8167#0 CTGAAAGATACAAATCAGTTGGAGTCCTAAATATCAATCAGAAAATCCAAACAACTAATG 287
consensus_8167#2 ------------------------------------------------------------
consensus_8167#1 CTGAAAGATACAAATCAGTTGGAGTCCTAAATATCAATCAGAAAATCCAAACAACTAATG 300
consensus_8167#3 ------------------------------------------------------------
consensus_8167#0 TGTGTGAATGGAAATAGTTAATTGGATATATCATTGCTTTTTGATAGTTATCTTTTAATT 347
consensus_8167#2 ------------------------------------------------------------
consensus_8167#1 TGNNNNNNNNNNNNNNNTTAATTGGATATATCATTGCTTTTTGATAGTTATCTTTTAATT 360
consensus_8167#3 ------------------------------------------------------------
consensus_8167#0 CACCTGTTACTGCTCAGTAATGATCTGAAAATGTATTTATCTTCTCAATCATCGTTTTAA 407
consensus_8167#2 ------------------------------------------------------------
consensus_8167#1 CACCTGTTACTGCTCAGTAATGATCTGAAAATGTATTTATCTTCTCAATCATCGTTTTAA 420
consensus_8167#3 ------------------------------------------------------------
consensus_8167#0 TTTTACCTCTCGCACTAGATAATAAATTAATTGTGTTGAAATACTGTCTATTTTCTTACT 467
consensus_8167#2 -------------------------------------------------------TTACT 5
consensus_8167#1 TTTTACCTCTCGCACTAGATAATAAA-----------------------------TTAAT 451
consensus_8167#3 ------------------------------------------------------------
consensus_8167#0 TAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTA 527
consensus_8167#2 TAAGTTCATTGAATCTCATTTACTATTAATTTATTAAAAGCCCGTACTGATAGTTATTTA 65
consensus_8167#1 TGTGTTGA--AATACTCATTTACTATTAATTTATTAAAAGCACGTACTGATAGTTATTTA 509
consensus_8167#3 ----TTCCTAGGAATCTATTGACTATACGTGAGTATACAGTTGTCCTTCATCATCAAAAC 56
** *** ***** * * * ** * ** * *
consensus_8167#0 TTCAAAAGAAGAAAATTATTT-ATGTTACTTGACTTTTCTTACTGGCAACTCATTG-TTG 585
consensus_8167#2 TTCAAAAAAAGAAAATTATTT-ATGTTACTTGACTTTTTTTACGGGCAACTCATGG-TTG 123
consensus_8167#1 TTCAAAAGAAGAAAATTATTT-ATGTTACTTGACTTTTCTTACTGGCAACTCATNGGNTG 568
consensus_8167#3 TGCGGTTAAACAGATTTACCTCGTGCTAACGTCAACTTTTGGCTGGCAAGTTACTCATGA 116
* * ** * * *** * ** ** ** * * ***** * *
consensus_8167#0 ATGTCCTCATTTATTTGATATTT-CGTTGTTTGTATATGATT----TTAGTTGACCTGA- 639
consensus_8167#2 AGGCCCCCATTTATTTGATATTT-CGTGGTTGGAAAATGATT----TTAGTTGCCCTGA- 177
consensus_8167#1 ATGTCCTCATTTATTTGATATTTTCGTTGTTTGTATATGATT----TTAGTTGACCTGA- 623
consensus_8167#3 CGACTAGCGGCCACATTGCAACTTAATCGGTAGAATTTGATCAGCACTTGAAGACTTGGC 176
* * * * * * * * * * **** * * * * **
consensus_8167#0 AGACAATAATTTCAAAATCTACTTCTGTTNTATTCTT--TCCTCACTGATTCTATTGTAA 697
consensus_8167#2 AGCCAATAATTTCAAAATCTACTTCTGTTTTATTCTT--TCCCCCCTGATTCTATGGTAA 235
consensus_8167#1 AG--AACATATTTCAAATCTATCT------------------------------------ 645
consensus_8167#3 AAACAAGACAATCATCATTCAGCTCTAGTCAGAGATGGATTGTGGCTAGCACTGGGATTC 236
* ** * * ** * *
consensus_8167#0 TAAATTCTAACTCGATCATAANTGGTTTNTAGTTCAAACAC-TATCATAGTAAA-TATAA 755
consensus_8167#2 TAAATTCTAACTCGATCATAATGGGTTTT-AGTTCAAACCCCTATCATAGTAAAATATAA 294
consensus_8167#1 ---------ACTCGATCATA-TGGGTNT--AGTTCANACC--TATC-TAGTAAA-TATAA 689
consensus_8167#3 AGAATGCACCTTTTGTCTCATTTGGGACT--CGTCAGCTGG--ATCACTATGGGGAGCGA 292
* ** * ** *** *** * *
consensus_8167#0 ACACATGTATGAAATTTGTCC-ATTTCTTGTNTG--ATTGGCTC--ATGNNTAACGGTGA 810
consensus_8167#2 CCCCATGTAATGAATTGGTCCCATTTTCTGGTTGGTATGGGCTCCAATGTTTACCGGTTG 354
consensus_8167#1 CC--ATGTATGAA--TTGTCC--ATTTCTGGNTG--ATGGGCTC--ATGTT--ACGGTGA 737
consensus_8167#3 CGGCATTTAAAGA-----GAAAAGTACTGGGTTG--AAGTCCTGGAGTGGA--------- 336
** ** * * * ** * ** **
consensus_8167#0 --TTGTAA-TAAAAAAATAGC 828
consensus_8167#2 ATTTGTAAATAAAAAAATAGC 375
consensus_8167#1 --TTGTA--TAAAAA------ 748
consensus_8167#3 ---------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||