cluster # 8173

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Schistosoma mansoni
cluster # 8173 cluster # 8173 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8173#0 length = 749 sequences # 5

consensus_8173#1 length = 194 sequences # 1

consensusID : consensus_8173#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 749
fasta sequence

                              [AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAAGGTGAAATACATCATGCTAATATTTCAGTCGAACGTAAGCAAGGGAACATTGATATATTAAATAAGAAACTGGAACGTTTAATTCATGACTGCGGTGTAAGTAATTGACTGTGAAATTAAATTATATTTTTTACCAACTGAAATAACTTTTTTTTGTAGTTTTGAATGACATACACTTTTATCTTAACTCTGTAGTCTAATGCAAATGATCTAATATAGGGTTTTTAATTATTTACATATTTGGTAAGTTTTGTTTTATTATAGGTAAATTAATTACTTAGTTATTGTTAATAGAATCATATATATCCTCGAATCCTTACCATACTGATGAATATTATTTTTAGAAAGTTTTTCCTCCGTAAAGTGTTCATTATTTATATTACAGTTTTTGAGGGGGTTAGCAAAGATGTTTAATTAAGTTTTTACATGGAAAGCACTGTGATAAACAACAAGGATGTTAGTGAATGATTAATAACTAGTAACGTTTCATAGTTCGAAATAATAAGTGATCGTATGGCACAATATCAGCCACTAAATATTTAGAACCTAGTTTGAGATGAAGTTGAATAATAG-AAGCTTTGCAGCTACTAGATCAAAGCGAAAACCTGTTCATGAGTAGAACAAA-CCTCACTCGGTAACTAA-TTCCATCTTCATCTATCGTCTACTCAAAGTCATATTGTACGGAGATA]

[+] EMBL CD085082             [AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAAGGTGAAATACATCATGCTAATATTTCAGTCGAACGTAAGCAAGGGAACATTGATATATTAAATAAGAAACTGGAACATTTAATTCATGACTGCGGTGTAAGTAATTGACTGTGAAATTAAATTATATTTTTTACCAACTGAAATAACTCTTTTTTGTAGTTTTGAATGACATACACTTTTATCTTAACTCTGTAGTCTAATGCAAATGATCTAATATAGGGTTTTTAATTATTTACATATTTGGTAAGTTTTGTTTTATTATAGGTAAATTAATTACTTAGTTATTGTTAATAGAATCATATATATCCTCGAATCCTTACCATACTGATGAATATTATTTTTAGAAAGTTTTTCCTCCGTAAAGTGTTCATTATTTATATTACAGTTTTTGAGGGGGTTAGCAAAGATGTTTAATTAAGTTTTTACATGGAAAGCACTGTGATAAACAACAAGGATGTTAGTGAATGATTAATAACTAGTAACGTTTCATAGTTCGAAATAATAAGTGATCGTATGGCACAATATCAGCCACTANATATTTAGAACCTAGNTTGAGATGAAGTTGAATAATAGAAAGC TTGCAGCTACTAGATCAAAGCGAAAACCTGTTCATGAGTAGAACAAACCCTCACTCGG NACTAANTNNCATC TCATCTATCGNCTACTCAAAGNCATATTGNACGGAGAT ]
[+] EMBL CD085350             [AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAAGGTGAAATACATCATGCTAATATTTCAGTCGAACGTAAGCAAGGGAACATTGATATATTAAATAAGAAACTGAAACGTTTAATTCATGACTGCGGTGTAAGTAATTGACTGTGAAATTAAATTATATTTTTTACCAACTGAAATAACTTTTTTTTGTAGTTTTGAATGACATACACTTTTATCTTAACTCTGTAGTCTAATGCAAATGATCTAATATAGGGTTTTTAATTATTTACATATTTGGTAAGTTTTGTTTTATTATAGGTAAATTAATTACTTAGTTATTGTTAATAGAATCATATATATCCTCGAATCCTTACCATACTGATGAATATTATTTTTAGAAAGTTTTTCCTCCGTAAAGTGTTCATTATTTATATTACAGTTTTTGAGGGGGTTAGCANAGATGTTTAATTAAGTTTTTACATGGAAAGCACTGTGATAAACAACAAGGATGTTAGTGAATGATTAATAACTAGTAACGTTTCATAGTTCGAAATAATAAGTGATCGTATGGCACAATATAAGCCACTA                                                                                                                                                              ]
[+] EMBL CD085299             [AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAAGGTGAAATACATCATGCTAATATTTCAGTCGAACGTAAGCAAGGGAACATTGATATATTAAATAGGAAACTGGAACGTTTAATTCATGACTGCGGTGTAAGTAATTGTCTGTGAAATTAAATTATATTTTTTACCAACTGAAATAACTTTTTTTTGTAGTTTTGAATGACATACACTTTTATCTTAACTCTGTAGTCTAATGCAAATGATCTAATATAGGGTTTTTAATTATTTACATATTTGGTAGGGTTTGTTTTATTATAGGTAAATTAATTACTTAGTTATTGTTAATAGAATCATATATATCCTCGAATCCTTACCATACTGATGAA                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD085207             [                                                                                                                                               TCATGACTGCGGTGTAAGTAATTGACTGTGAAATTAAATTATATTTTTTAGCAACTGAAATAACTTTTTTTTGTAGTTTTGAATGACATACACTTTTATCTTAACTCTGTAGTCT ATGCAAATGATCTAATATAGGGTTTTTAATTATTTACATATTTGGTAAGTTTTGTTTTATTATAGGTAAATTAATTACTTAGTTATTGTTAATAGAATCATATATATCCTCGAATCCTTACCATACTGATGAATATTATTTTTAGAAAGTTTATCCTCCGTAAAGTGTTCATTATTTATATTACAGTTTTTGAGGGGGTTAGCAAAGATGTTTAATTAAGTTTTTACATGGAAAGCACTGTGATAATCAACAAGGATGTTAGTGAATGATTAATAACTAGTAACGTTTCATAGTTCGAAATAATAAGTGATCGTATGGCACAATATAAGCCACTAAATATTTAGAACCTAGTTTGAGATGAAGTTGAATAATAG AAGCTTTGCAGCTACTAGATCAAAGCGAAAACCTGTTCATGAGTAGAACAAA CCTCACTCGGTAACTAA TTCCATCTTCATCTATCGTCTACTCAAAGTCATATTGTACGGAGATA]
[-] EMBL CD085173             [                                                                                                                                                                                                               aacTTTTTGTAGTTNTGAATGGCATACACTTTTATCTTAACTCTGTAGTCTAATGCAAATGATCTAATATAGGGTTTTTAATTATTTACATATTTGGTAAGTTTTGTTTTATTATAGGTAAATTAATTACTTAGTTATTGTTAATAGAATCATATATATCCTCGAATCCTTACCATACTGATGAATATTATTTTTAGAAAGTTTTTCCTCCGTAAAGTGTTCATTATTTATATTACAGTTTTTGAGGGGGTTAGCAAAGATGTTTAATTAAGTTTTTACATGGAAAGCACTGTGATAAACAACAAGGATGTTAGTGAATGATTAATAACTAGTAACGTTTCATAGTTCGAAATAATAAGTGATCGTATGGCACAATATCAGCCACTAAATATTTAGAACCTAGTTTGAGATGAAGTTGAATAATAG AAGCTTTGCAGCTACTAGATCAAAGCGAAAACCTGTTCATGAGTAGAACAAA CCTCACTCGGTAACTAA TTCCATCTTCATCTATCGTCTACTCAAAGTCATATTGTACGGAGATA]




>consensus_8173#0
AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAA
GGTGAAATACATCATGCTAATATTTCAGTCGAACGTAAGCAAGGGAACATTGATATATTA
AATAAGAAACTGGAACGTTTAATTCATGACTGCGGTGTAAGTAATTGACTGTGAAATTAA
ATTATATTTTTTACCAACTGAAATAACTTTTTTTTGTAGTTTTGAATGACATACACTTTT
ATCTTAACTCTGTAGTCTAATGCAAATGATCTAATATAGGGTTTTTAATTATTTACATAT
TTGGTAAGTTTTGTTTTATTATAGGTAAATTAATTACTTAGTTATTGTTAATAGAATCAT
ATATATCCTCGAATCCTTACCATACTGATGAATATTATTTTTAGAAAGTTTTTCCTCCGT
AAAGTGTTCATTATTTATATTACAGTTTTTGAGGGGGTTAGCAAAGATGTTTAATTAAGT
TTTTACATGGAAAGCACTGTGATAAACAACAAGGATGTTAGTGAATGATTAATAACTAGT
AACGTTTCATAGTTCGAAATAATAAGTGATCGTATGGCACAATATCAGCCACTAAATATT
TAGAACCTAGTTTGAGATGAAGTTGAATAATAGAAGCTTTGCAGCTACTAGATCAAAGCG
AAAACCTGTTCATGAGTAGAACAAACCTCACTCGGTAACTAATTCCATCTTCATCTATCG
TCTACTCAAAGTCATATTGTACGGAGATA

consensusID : consensus_8173#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 194
fasta sequence

                              [AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAAGGTGAAATACATCAGGCTAATATTGCAGGGCGAACGTAAGCAAGGGAACATTGATTTATAAAAAAAAAAGGTGGAACGTTTAAATCTATTGAGGGGGGTGNAAGTATTGAGTGTGGAAAAATAAATTATTTTTT]

[+] EMBL CD085058             [AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAAGGTGAAATACATCAGGCTAATATTGCAGGGCGAACGTAAGCAAGGGAACATTGATTTATAAAAAAAAAAGGTGGAACGTTTAAATCTATTGAGGGGGGTGNAAGTATTGAGTGTGGAAAAATAAATTATTTTTT]




>consensus_8173#1
AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAA
GGTGAAATACATCAGGCTAATATTGCAGGGCGAACGTAAGCAAGGGAACATTGATTTATA
AAAAAAAAAGGTGGAACGTTTAAATCTATTGAGGGGGGTGNAAGTATTGAGTGTGGAAAA
ATAAATTATTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8173#0      AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAA 60
consensus_8173#1      AAAGTCAGTGAATTAGAACGAGAAATCGATAACACAAATCTATTGATCACTAAGCTGGAA 60
                      ************************************************************

consensus_8173#0      GGTGAAATACATCATGCTAATATTTCAGT-CGAACGTAAGCAAGGGAACATTGATATATT 119
consensus_8173#1      GGTGAAATACATCAGGCTAATATTGCAGGGCGAACGTAAGCAAGGGAACATTGATTTATA 120
                      ************** ********* ***  ************************* *** 

consensus_8173#0      AAATAAGAAACTGGAACGTTTAATTCA--TGACTGCGGTGTAAGTAATTGACTGTG--AA 175
consensus_8173#1      AAAAAAAAAGGTGGAACGTTTAAATCTATTGAGGGGGGTGNAAGTA-TTGAGTGTGGAAA 179
                      *** ** **  ************ **   ***  * **** ***** **** ****  **

consensus_8173#0      ATTAAATTATATTTTTTACCAACTGAAATAACTTTTTTTTGTAGTTTTGAATGACATACA 235
consensus_8173#1      AATAAATTATTTTTT--------------------------------------------- 194
                      * ******** ****                                             

consensus_8173#0      CTTTTATCTTAACTCTGTAGTCTAATGCAAATGATCTAATATAGGGTTTTTAATTATTTA 295
consensus_8173#1      ------------------------------------------------------------
                                                                                  

consensus_8173#0      CATATTTGGTAAGTTTTGTTTTATTATAGGTAAATTAATTACTTAGTTATTGTTAATAGA 355
consensus_8173#1      ------------------------------------------------------------
                                                                                  

consensus_8173#0      ATCATATATATCCTCGAATCCTTACCATACTGATGAATATTATTTTTAGAAAGTTTTTCC 415
consensus_8173#1      ------------------------------------------------------------
                                                                                  

consensus_8173#0      TCCGTAAAGTGTTCATTATTTATATTACAGTTTTTGAGGGGGTTAGCAAAGATGTTTAAT 475
consensus_8173#1      ------------------------------------------------------------
                                                                                  

consensus_8173#0      TAAGTTTTTACATGGAAAGCACTGTGATAAACAACAAGGATGTTAGTGAATGATTAATAA 535
consensus_8173#1      ------------------------------------------------------------
                                                                                  

consensus_8173#0      CTAGTAACGTTTCATAGTTCGAAATAATAAGTGATCGTATGGCACAATATCAGCCACTAA 595
consensus_8173#1      ------------------------------------------------------------
                                                                                  

consensus_8173#0      ATATTTAGAACCTAGTTTGAGATGAAGTTGAATAATAGAAGCTTTGCAGCTACTAGATCA 655
consensus_8173#1      ------------------------------------------------------------
                                                                                  

consensus_8173#0      AAGCGAAAACCTGTTCATGAGTAGAACAAACCTCACTCGGTAACTAATTCCATCTTCATC 715
consensus_8173#1      ------------------------------------------------------------
                                                                                  

consensus_8173#0      TATCGTCTACTCAAAGTCATATTGTACGGAGATA 749
consensus_8173#1      ----------------------------------