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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 790 fasta sequence
[GGACGTATTAATGTTGTGTTGCTTCTATGTTTCAGGATAATAATTCTTCTCCCCTAATATGCTTGTCGAAGATTGTCCT-CAGCAGCATACCTTCCGGGTGGAAGGTTACGTCTCAATTAAATAATTGCTTCAAGTTGTTTTCAAACATTTTACCTTTCTCATCACCATTGGAATTGGAGTATTTTTTCCAGTTTAACCATTTCGCTAACAAGGGAGAAATAAAAACTATCTATGGAACGTTCGCTTACTACGAAATATC-AAATAAGTTGAAACAACTGATGTTTCGGAAGGAACTGTCGCTCAGTAACTCATGTTTGTTGTCTCTAATAGAAAATCCCCCTCCTAATTTCACCACTCATTGCTTGCTTGGCCTACCTTCAGCATTATTTCAACAGTTTATCATTATTAGTTTTTGTATATACTGGCTTCCAATGACACATGTATTATATCATCGCACAGTTCCGGAGGAGGGAAATTCCGGGGCTTTGCAGACTGTTTTTAGTTTTTTAGCTGATCCACACGTTTTCAACAAACTATATGAAACATGCAGAGATGTACAAGTGTTTGTATATTCTTGGATGCAACATAGTCATTTCTATGGTGTTAGCGGGGCAAACACTGAGGTCAACCAATACATAAACATAGTTTTTAAACATTCAGATTATTCTCCACTTGTTGAACCGCATGCATTATCGAATAATTTGGTTNTAAACTTACATGAAGTTCTCACTCGAGCTCCCCGGTTAAAACGCAATGCAGCCCCAGAAGTAATAGCTGCTGCGTTGCTTGG]
[+] EMBL CD098154 [GGACGTATTAATGTTGTGTTGCTTCTATGTTTCAGGATAATAATTCTTCTCCCCTAATATGCTTGTCGAAGATTGTCCT CAGCAGCATACCTTCCGGGTGGAAGGTTACGTCTCAATTAAATAATTGCTTCAAGTTGTTTTCAAACATTTTACCTTTCTCATCACCATTGGAATTGGAGTATTTTTTCCAGTTTAACCATTTCGCTAACAAGGGAGAAATAAAAACTATCTATGGAACGTTCGCTTACTACGAAATATC NAATAAGTTGAAACAACTGATGTNTCGGAAGG ]
[-] EMBL CD195579 [ ggAGATGTTCCTACAGCAGCATACCTTCCGGGTGGAAGGTTACGTCTCAATTAAATAACTGCTTCAAGTTGTTTTCAAACATTTTACCTTTCTCATCACCATTGGAATTGGAGTATTTTTTCCAGTTTAACCATTTCGCTAACAAGGGAGAAATAAAAACTATCTATGGAACGTTCGCTTACTACGAAATATCAAAATAAGTTGAAACAACTGATGTTTCGGAAGGAACTGTCGCTCAGTAACTCATGTTTGTTGTCTCTAATAGAAAATCCCCCTCCTAATTTCACCACTCATTGCTTGCTTGGCCTACCTTCAGCATTATTTCAACAGTTTATCATTATTAGTTTTTGTATATACTGGCTTCCAATGACACATGTATTATATCATCGCACAGTTCCGGAGGAGGGAAATTCCGGGGCTTTGCAGACTGTTTTT ]
[-] EMBL CD187360 [ TACCTTTCTCATCACCATTGGAATTGGAGTATTTTTTCCAGTTTAACCATTTCGCTAACAAGGGAGAAATAAANACTATCTATGGAACGTTCGCTTACTACGAAATATC AAATAAGTTGAAACAACTGATGTTTCGGAAGGAACTGTCGCTCAGTAACTCATGTTTGTTGTCTCTAATAGAAAATCCCCCTCCTAATTTCACCACTCATTGCTTGCTTGGCCTACCTTCAGCATTATTTCAACAGTTTATCATTATTAGTTTTTGTATATACTGGCTTCCAATGACACATGTATTATATCATCGCACAGTTCCGGAGGAGGGAAATTCCGGGGCTTTGCAGACTGTTTTTAGTTTTTTAGCTGATCCACACGTTTTCAACAAACTATA ]
[+] EMBL CD153801 [ CGAAATATC AAATAAGTTGAAACAACTGATGTTTCGGAAGGAACTGTCGCTCAGTAACTCATGTTTGTTGTCTCTAATAGAAAATCCCCCTCCTAATTTCACCACTCATTGCTTGCTTGGCCTACCTTCAGCATTATTTCAACAGTTTATCATTATTAGTTTTTGTATATACTGGCTTCCAATGACACATGTATTATATCATCGCACAGTTCCGGAGGAGGGCAATTCCGGGGCTTTGCAGACTGTTTTTAGTTTTTTAGCTGATCCACACGTTTTCAACAAACTATATGAAACATGCAGAGATGTACAAGTGTTTGTATATTCTTGGATGCAACATAGTCATTTCTATGGTGTTAGCGGGGCAAACACTGAGGTCAACCAATACATAAACATAGTTTTTAAACATTCAGATTATTCTCCACTTGTTGAACCGCATGCATTATCGAATAATTTGGTTNTAAACTTACATGAAGTTCTCACTCGAGCTCCCCGGTTAAAACGCAATGCAGCCCCAGAAGTAATAGCTGCTGCGTTGCTTGG]
[+] EMBL CD157818 [ TTGCTTGCTTGGCCTACCTTCAGCATTACTTCAACAGTTAATCATTATTAGTTTTTGTATATACTGGCTTCCAATGACACATGTATTATATCATCGCACAGTTCCGGAGGAGGGCAATTCCGGGGCTTAGCAGACTGTTTTTAGTATTTTAGCTGATCCACACGTTTTCAACAAACTATATGAAACATGCAGAGATGTACAAGTGTTTGTATATTCTTGGATGCAACATACTCATTTCTATGGTGTTAGCGGGGCAAACACTGAGGTCAACCAATACATAAACATAGTTTTTAAACATTCAGATTATTCTCCACTTGTTGAACCGCATGCATTATCGAATAATTTGGTTTTAAACTTACATGAAGTTCTCACTCGAACTTCCCGGAT AAACGCAAT ]
consensusID : consensus_8195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence
[CAGAGATGTACAAGTGTTTGTATATTCTTGGATGCAACATAGTCATTTCTATGGTGTTTAGCGGGGCAAACACTGAGGTCAACCAATACATAAACATAGTTTTTAAACATTCAGATTATTCTCCACTTGTTCACCACGATGCATTCTCGCATAACTGGGGTTTAAACTCACACGAAGTTCTCACTCCGAGCTCCCCAGTTCGAATGCAGAGCAGCCCCATGAATGTTATATCTCCTGCATAGCATGGTGCTTAAACTGTGCATAACTGTCATGTGCGAGCGCTCCGATTACCATCATAGCATGACGAAGCGGTTCGGAGTGCTCGATGTGACTGTACCTTCTTTTTTCACTCTAACGAAATTCCCTCCGTTGCTCGAGCCACGTGTAAGCATTTGACGCGCATGCGCATATCGCATCGAGCCGTGTACGCGCTACACCATGTACTTCGTACCTGTAGATCACTGGTCTCCACATCATG]
[-] EMBL CD128209 [CAGAGATGTACAAGTGTTTGTATATTCTTGGATGCAACATAGTCATTTCTATGGTGTTTAGCGGGGCAAACACTGAGGTCAACCAATACATAAACATAGTTTTTAAACATTCAGATTATTCTCCACTTGTTCACCACGATGCATTCTCGCATAACTGGGGTTTAAACTCACACGAAGTTCTCACTCCGAGCTCCCCAGTTCGAATGCAGAGCAGCCCCATGAATGTTATATCTCCTGCATAGCATGGTGCTTAAACTGTGCATAACTGTCATGTGCGAGCGCTCCGATTACCATCATAGCATGACGAAGCGGTTCGGAGTGCTCGATGTGACTGTACCTTCTTTTTTCACTCTAACGAAATTCCCTCCGTTGCTCGAGCCACGTGTAAGCATTTGACGCGCATGCGCATATCGCATCGAGCCGTGTACGCGCTACACCATGTACTTCGTACCTGTAGATCACTGGTCTCCACATCATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8195#0 GGACGTATTAATGTTGTGTTGCTTCTATGTTTCAGGATAATAATTCTTCTCCCCTAATAT 60
consensus_8195#1 ------------------------------------------------------------
consensus_8195#0 GCTTGTCGAAGATTGTCCTCAGCAGCATACCTTCCGGGTGGAAGGTTACGTCTCAATTAA 120
consensus_8195#1 ------------------------------------------------------------
consensus_8195#0 ATAATTGCTTCAAGTTGTTTTCAAACATTTTACCTTTCTCATCACCATTGGAATTGGAGT 180
consensus_8195#1 ------------------------------------------------------------
consensus_8195#0 ATTTTTTCCAGTTTAACCATTTCGCTAACAAGGGAGAAATAAAAACTATCTATGGAACGT 240
consensus_8195#1 ------------------------------------------------------------
consensus_8195#0 TCGCTTACTACGAAATATCAAATAAGTTGAAACAACTG-ATGTTTCGGAAGGAACTGTCG 299
consensus_8195#1 ------------------CAGAGATGTACAAGTGTTTGTATATTCTTGGATGCAACATAG 42
** * * ** ** ** ** ** * * * * * *
consensus_8195#0 CTCAGTAACTCATGTTTGTTGTCTCTAATAGAAAATCCCCCTCCTAATTTCACCACTCAT 359
consensus_8195#1 ---------TCATTTCTATGGTGTTTAGCGGGGCAAACACTGAGGTCAACCAATACATAA 93
**** * * * ** * ** * * * * ** ** *
consensus_8195#0 TGCTTGCTTGGCCTACCTTCAGCATTATTT--CAACAGTTTATCATTATTAGTTTTTGTA 417
consensus_8195#1 -ACATAGTTTTTAAACATTCAG-ATTATTCTCCACTTGTTCACCACGATGCATTCTCGCA 151
* * ** ** ***** ****** ** *** * ** ** ** * * *
consensus_8195#0 TATACTGGCTTCCAATGACACATGTATTATATCATCGCACAGTTCCGGAGGAGGGAAATT 477
consensus_8195#1 TA-ACTGGGGTTTAAACTCACACGAAGT-TCTCACTCCG-AGCTCCCCAG--------TT 200
** ***** * ** **** * * * * *** * ** *** ** **
consensus_8195#0 CCGGGGCTTTGCAGACTGTTTTTAGTTTTTTAGCTGATCCACA-CGTTTTCAACAAACTA 536
consensus_8195#1 CGAATGCAGAGCAGCCC--CATGAATGTTATATCTCCTGCATAGCATGGTGCTTAAACTG 258
* ** **** * * * * ** ** ** * ** * * * * *****
consensus_8195#0 TATGAAACATGCAGAGATGTACAAGTGTTTGTATATTCTTGGATGCAACATAGTCATTTC 596
consensus_8195#1 TGCATAACTGTCA----TGTGCGAGCGCTCCGATTACCATCATAGCATGACGAAGCGGTT 314
* *** ** *** * ** * * ** * * *** * *
consensus_8195#0 TATGGTGTTAGCGGGGCAAACACTGAGGTCAACCAATACATAAACATAGTTTTTAAACAT 656
consensus_8195#1 CGGAGTGCTCGATGTGACTGTACCTTCTTTTTTCACTCTAACGAAATT-CCCTCCGTTGC 373
*** * * * * ** * ** * * * ** *
consensus_8195#0 TCAGATTATTCTCCACTTGTTGAACCGCATGCAT-TATCGAAT-AATTTGGTTNTAAACT 714
consensus_8195#1 TCGAGCCACGTGTAAGCATTTGACGCGCATGCGCATATCGCATCGAGCCGTGTACGCGCT 433
** * * **** ******* ***** ** * * * **
consensus_8195#0 TA--CATGAAGTTCTCACTCG-AGCTCCCCGGTTAAAACGCAATGCAGCCCCAGAAGTAA 771
consensus_8195#1 ACACCATGTACTTCGTACCTGTAGATCACTGGTCTCCACATCATG--------------- 478
**** * *** ** * ** ** * *** ** ***
consensus_8195#0 TAGCTGCTGCGTTGCTTGG 790
consensus_8195#1 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||