cluster # 8226

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8226 cluster # 8226 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8226#0 length = 808 sequences # 5

consensus_8226#1 length = 305 sequences # 1

consensusID : consensus_8226#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 808
fasta sequence

                              [ACCAAATCCCTTTGATTTGTATACACAAAAAGATAAAACTTTGACTCAGTAGACTAGTTGCCATCATCTGTTTGGTGGATTAGGAGTTAAAATATTATTTCTCTTTGAAAAAGGGTCCAATCTACGATCTTAAGAAAAAATTTGCATAAAACTAAATTATATTAGCTTTATCTTTGGAAAAATTGACAGTCATTGTTTAAAATATACACAATCATACGCGTAAACTTCACTGAGTGAACAAATAAACTAATATAAAAACTCCACTGTTTTTGAAGTGATTGTGGTGAGTATGTAATCAGATGAAACTCAGTAGCTAAGTTCATGTTTCATACTTATCGTGTGGAAGTTAATGATGCCAGTCGATTATTCAGATTTCACTCTTTAAGGGCATGAGTTTATTGCACGAACATTTTGTTCATCGCCTACTGATGAATATTCATATGAACTGAATATAATCGAAAATATTTATTACTCGCAACTAACTGTTCAACTATCTCGAAAAGTAGTCTAGACAATGAATTACCAACTTACCCCAAGTTCAGCCAGATATCACGTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAATATGTTATGTAAATTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACCTGAGAGCAAGCCTCTTTCTAAGGTGTACCACAGTCACATAAAAAATCGAAAAACAGAGACAGCAACAATTTTCATAGAACTATTTGAACGACAAAGGTTTAAATGAGGTATACCAAATAACTTTGAATAAAATAGGTATGGATAGTGT]

[+] EMBL CD196449             [ACCAAATCCCTTTGATTTGTATACACAAAAAGATAAAACTTTGACTCAGTAGACTAGTTGCCATCATCTGTTTGGTGGATTAGGAGTTAAAATATTATTTCTCTTTGAAAAAGGGTCCAATCTACGATCTTAAGAAAAAATTTGCATAAAACTAAATTATATTAGCTTTATCTTTGGAAAAATTGACAGTCATTGTTTAAAATATACACAATCATACGCGTAAACTTCACTGAGTGAACAAATAAACTAATATAAAAACTCCACTGTTTTTGAAGTGATTGTGGTGAGTATGTAATCAGATGAAACTCAGTAGCTAAGTTCATGTTTCATACTTATCGTGTGGAAGTTAATGATGCCAGTCGATTATTCAGATTTCACTCTTTAAGGGCATGAGTTTATTGCACGAACATTTTGTTCATCGCCTACTGATGAATATTCATATGAACTGAATATAATCGAAAATATTTt                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD196583             [ACCAAATCCCTTCGATTTGTATACACAAAAAGATAAAACTTTGACTCAGTAGACTAGTTGCCATCATCTGTTTGGTGGATTAGGAGTTAAAATATTATTTCTCTTTGAAAAAGGGTCCAATCTACGATCTTAAGAAAAAATTTGCATAAAACTAAATTATATTAGCTTTATCTTTGGAAAAATTGACAGTCATTGTTTAAAATATACACAATCATACGCGTAAACTTCACTGAGTGAACAAATAAACTAATATAAAAACTCCACTGTTTTTGAAGTGATTGTGGTGAGTATGTAATCAGATGAAACTCAGTAGCTAAGTTCATGTTTCATACTTATCGTGTGGAAGTTAATGATGCCAGTCGATTATTCAGATTTCACTCTTTAAGGGCATGAGTTTATTGCACGAACATTTTGTTCATCGCCTACTGATGAATATTC                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD196486             [                                                                                                                                                                                                                                                                                                                                                                                                  GGCATGAGTTTATTGCACGAACATTTTGTTCATCGCCTACTGATGAATATTCATATGAACTGAATATAATCGAAAATATTTATTACTCGCAACTAACTGTTCAACTATCTCGAAAAGTAGTCTAGACAATGAATTACCAACTTACCCCAAGTTCAGCCAGATATCACGTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAATATGTTATGTAAATTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACCTGAGAGCAAGCCTCTTTCTAAGGTGTACCACAGTCACATAAAAAATCGAAAAACAGAGACAGCAACAATTTTCATAGAACTATTTGAACGACAAAGGTTTAAATGAGGTATACCAAATAACTTTGAATAAAATAGGTATGGATAGTGT]
[-] EMBL CD196663             [                                                                                                                                                                                                                                                                                                                                                                                                         GTTTATTGCACGAACATTTTGTTCATCGCCTACTGATGAATATTCATATGAACTGAATATAATCGAAAATATTTATTACTCGCAACTAACTGTTCAACTATCTCGAAAAGTAGTCTAGACAATGAATTACCAACTTACCCCAAGTTCAGCCAGATATCACGTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAATATGTTATGTAAATTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACCTGAGAGCAAGCCTCTTTCTAAGGTGTACCACAGTCACATAAAAAATCGAAAAACAGAGACAGCAACAATTTTCATAGAACTATTTGAACGACAAAGGTTTAAATGAGGTATACCAAATAACTTTGAATAAAATAGGTATGGATAGTGT]
[-] EMBL CD196481             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTCATAATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAATATGTTATGTAAATTGCATTGGTGGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACCTGAGAGCAAGCCTCTTTCTAAGGTGTACCACAGTCACATAAAAAATCGAAAAACAGAGACAGCAACAATTTTCATAGAACTATTTGAACGACAAAGGTTTAAATGAGGTATACCAAATAACTTTGAATAAAATAGGTATGGATAGTGT]




>consensus_8226#0
ACCAAATCCCTTTGATTTGTATACACAAAAAGATAAAACTTTGACTCAGTAGACTAGTTG
CCATCATCTGTTTGGTGGATTAGGAGTTAAAATATTATTTCTCTTTGAAAAAGGGTCCAA
TCTACGATCTTAAGAAAAAATTTGCATAAAACTAAATTATATTAGCTTTATCTTTGGAAA
AATTGACAGTCATTGTTTAAAATATACACAATCATACGCGTAAACTTCACTGAGTGAACA
AATAAACTAATATAAAAACTCCACTGTTTTTGAAGTGATTGTGGTGAGTATGTAATCAGA
TGAAACTCAGTAGCTAAGTTCATGTTTCATACTTATCGTGTGGAAGTTAATGATGCCAGT
CGATTATTCAGATTTCACTCTTTAAGGGCATGAGTTTATTGCACGAACATTTTGTTCATC
GCCTACTGATGAATATTCATATGAACTGAATATAATCGAAAATATTTATTACTCGCAACT
AACTGTTCAACTATCTCGAAAAGTAGTCTAGACAATGAATTACCAACTTACCCCAAGTTC
AGCCAGATATCACGTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAA
TATGTTATGTAAATTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACC
TGAGAGCAAGCCTCTTTCTAAGGTGTACCACAGTCACATAAAAAATCGAAAAACAGAGAC
AGCAACAATTTTCATAGAACTATTTGAACGACAAAGGTTTAAATGAGGTATACCAAATAA
CTTTGAATAAAATAGGTATGGATAGTGT

consensusID : consensus_8226#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence

                              [TTTCGATACCGAATGGCATTAATTTNTGATCCATCACCCNCAAGTTCAGCCAGATATCACGTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAATATGTTATGTAAATTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACCTGAGAGCAAGCCTCTTTCTTATAATAGTCCCCGAACGACCAGCTGCCCAACATTTCAAACATTGTATGATGATGCCTATCATATCCCACATCATTTAAATCATCATGACGACCACCGATTCGAATACATGGCTGTGAG]

[-] EMBL CD198005             [TTTCGATACCGAATGGCATTAATTTNTGATCCATCACCCNCAAGTTCAGCCAGATATCACGTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAATATGTTATGTAAATTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACCTGAGAGCAAGCCTCTTTCTTATAATAGTCCCCGAACGACCAGCTGCCCAACATTTCAAACATTGTATGATGATGCCTATCATATCCCACATCATTTAAATCATCATGACGACCACCGATTCGAATACATGGCTGTGAG]




>consensus_8226#1
TTTCGATACCGAATGGCATTAATTTNTGATCCATCACCCNCAAGTTCAGCCAGATATCAC
GTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAATATGTTATGTAAA
TTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACCTGAGAGCAAGCCT
CTTTCTTATAATAGTCCCCGAACGACCAGCTGCCCAACATTTCAAACATTGTATGATGAT
GCCTATCATATCCCACATCATTTAAATCATCATGACGACCACCGATTCGAATACATGGCT
GTGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8226#0      ACCAAATCCCTTTGATTTGTATACACAAAAAGATAAAACTTTGACTCAGTAGACTAGTTG 60
consensus_8226#1      ------------------------------------------------------------
                                                                                  

consensus_8226#0      CCATCATCTGTTTGGTGGATTAGGAGTTAAAATATTATTTCTCTTTGAAAAAGGGTCCAA 120
consensus_8226#1      ------------------------------------------------------------
                                                                                  

consensus_8226#0      TCTACGATCTTAAGAAAAAATTTGCATAAAACTAAATTATATTAGCTTTATCTTTGGAAA 180
consensus_8226#1      ------------------------------------------------------------
                                                                                  

consensus_8226#0      AATTGACAGTCATTGTTTAAAATATACACAATCATACGCGTAAACTTCACTGAGTGAACA 240
consensus_8226#1      ------------------------------------------------------------
                                                                                  

consensus_8226#0      AATAAACTAATATAAAAACTCCACTGTTTTTGAAGTGATTGTGGTGAGTATGTAATCAGA 300
consensus_8226#1      ------------------------------------------------------------
                                                                                  

consensus_8226#0      TGAAACTCAGTAGCTAAGTTCATGTTTCATACTTATCGTGTGGAAGTTAATGATGCCAGT 360
consensus_8226#1      ------------------------------------------------------------
                                                                                  

consensus_8226#0      CGATTATTCAGATTTCACTCTTTAAGGGCATGAGTTTATTGCACGAACATTTTGTTCATC 420
consensus_8226#1      ------------------------------------------------------------
                                                                                  

consensus_8226#0      GCCTACTGATGAATATTCATATGAACTGAATATAATCGAAAATATTTATTACTCGCAACT 480
consensus_8226#1      ------------------------------------------------------------
                                                                                  

consensus_8226#0      AACTGTTCAACTATCTCGAAAAGTAGTCTAGACAATGAATTACCAACTTACCCCAAGTTC 540
consensus_8226#1      -------------TTTCGATACCGAATGGCATTAATTTNTGATCCATCACCCNCAAGTTC 47
                                   * **** *   * *      ***   * * * *    ** *******

consensus_8226#0      AGCCAGATATCACGTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAA 600
consensus_8226#1      AGCCAGATATCACGTGTTTCATCATCTGGAGGAAGTCCAAGTTTTTGATCACCACCGAAA 107
                      ************************************************************

consensus_8226#0      TATGTTATGTAAATTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACC 660
consensus_8226#1      TATGTTATGTAAATTGCATTGGTAGGCAGGTTTAACACCTCAGTAAGAAATTTCCAAACC 167
                      ************************************************************

consensus_8226#0      TGAGAGCAAGCCTCTTTCTAAGGTGTACCACAGTCACATAAAAAATCGAAAAACAGAGAC 720
consensus_8226#1      TGAGAGCAAGCCTCTTTCT------TATAATAGTCCC-CGAACGACCAGCTGCCCAACAT 220
                      *******************      **  * **** *   **  * *      *  * * 

consensus_8226#0      AGCAACAATTTTCATAGAA---CTATTTGAACGACAAAGGTTTAAATGAGGTATACCAAA 777
consensus_8226#1      TTCAAACATTGTATGATGATGCCTATCATATCCCACATCATTTAAATCAT-CATGACGAC 279
                        ***  *** *   *  *   ****   * *    *   ******* *   **  * * 

consensus_8226#0      TAAC--TTTGAATAAAATAGGTATGGATAGTGT 808
consensus_8226#1      CACCGATTCGAATACA-TGGCTGTGAG------ 305
                       * *  ** ***** * * * * **