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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 956 fasta sequence
[CAGTGGTAAAGTTAACAATGATTTGTAGCTTTGACGCCGAAATCAGTACGTTTCAACCTAATAATTGCGAAAGACCGATTAAAAAAGCAAGTAAGTGGTTGGAAATACGTTTATCACAAGATTACCAGTTATTTTGTACTAAACTCACAGAACACCACTTTACCTGTTGCGCGCTGAAATGACATTATCTGGTAAGATTTTTCTACTGATAGACAGAATATTAATCTAAGGTTGCTTCGGCGATTATGATCCTAAGTTAACCATTACTAGGTACTGGGAGCTCATTCTTCTAAGAACATATACACTACAAAACATAAAAAGTGAAATACGCCCGGGTGTCTCAACCAGCAACTTTTTAACGTGTTACCCATTTGATATATTGTGTAAACTAGTACTTGATTGTTGTAATTA-GATATTTT-AAGGAAGGATTTTGAACAGAGGCATATGGTGTTAAGTAAAGATTAAGGATGATGATACTTTAACTTCGAATTATTATGGCTGTCATTTTTCATGGGTATTGACACGGTTATAAAAGATTGAGACCTTTCAACTTTGAGGGAGACTTACCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCCTTAAGAGAATTGGGTGTAA-ATATAAGCGATTATGCACCTACAAATCGTC-TTTTCCCCAGGTCCGGGGAAAATAGTG-CCTATT-TTCCCTAGAATGTACCCATAGAGGAAAAATTTATCGAACTTGACACTTTCAGTTTGCCAAAATTTACATTAACTCGTCCACCTTTCCCCTAAACTGGCATCAAATTGTCTACCTTACCCCTAAAATTAACACCACATTGTTTATTCTCACCGATCTCATGAGGACAAAATTTGTAGCCGAATTGTTGGGAAGTTCTGTTGTTAATCTTAGGGGAGATGTGATTAGAAACACATANACTTTCATGGGCTTTGTGGAAAACT]
[+] EMBL CD124253 [CAGTGGTAAAGTTAACAATGATTTGTAGCTTTGACGCCGAAATCAGTACGTTTCAACCTAATAATTGCGAAAGACCGATTAAAAAAGCAAGTAAGTGGTTGGAAATACGTTTATCACAAGATTACCAGTTATTTTGTACTAAACTCACAGAACACCACTTTACCTGTTGCGCGCTGAAATGACATTATCTGGTAAGATTTTTCTACTGATAGACAGAATATTAATCTAAGGTTGCTTCGGCGATTATGATCCTAAGTTAACCATTACTAGGTACTGGGAGCTCATTCTTCTAAGAACATATACACTACAAAACATAAAAAGTGAAATACGCCCGGGTGTCTCAACCAGCAACTTTTTAACGTGTTACCCATTTGATATATTGTGTAAACTAGTACTTGATTGTTGTAATTA GATATTTT AAGGAAGGATTTTGAACAGAGGCATATGGTGTTAAGTAAAGATTAAGGATGATGATACTTTAACTTCGAATTATTATGGCTGTCATTNTTCATGGGTATTGACACGGTTATAAAAGATTGAGACCTTTCAACTNTGAGGGAGACTTANCCCAGC AGCAAGAAAGGATTACANAGGCGGACTTTTGGGCGAATCCTTAAGAGAATTGNGTGTAANNTAT AGCGATTATGCACCTANCAATCGTCTTTTTCCCCA GTNCGGGGAAAATAGTGCCCTATTNTTCCt ]
[-] EMBL CD180844 [ CTAAACTCACAGAACACCACTTTACCTGTTGCGCGCTGAAATGACATTATCTGGTAAGATTTTTCTACTGATAGACAGAATATTAATCTAAGGTTGCTTCGGCGATTATGATCCTAAGTTAACCATTACTAGGTACTGGGAGCTCATTCTTCTAAGAACATATACACTACAAAACATAAAAAGTGAAATACGCCCGGGTGTCTCAACCAGCAACTTTTTAACGTGTTACCCATTTGATATATTGTGTAAACTAGTACTTGATTGTTGTAATTA GATATTTT AAGGAAGGATTTTGAACAGAGGCATATGGTGTTAAGTAAAGATTAAGGATGATGATACTTTAACTTCGAATTATTATGGCTGTCATTTTTCATGGGTGTTGACACGGTTATAAAAGATTGAGACCTTTCAACTTTGAGGGAGACTTACCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCCTTAAGAGAATTGGGTGTAA ATATAAGCGATTATGCACCCACAAATCGT ]
[+] EMBL CD188583 [ cATTACGATATTTTCAGGGAAGGATTTTGAACAGAGGCATATGGTGTTAAGTAAAGATTAAGGATGATGATACTTTAACTTCGAATTATTATGGCCGTCTATTTACATGGGTATTGACACGGTTATAAAAGATTGAGACCTTTCAACTTTGAGGGAGACTTACCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCCTTAAGAGAATTGGGTGTAA ATATAAGCGATTATGCACCTACAAATCGTC TTTTCCCCAGGTCCGGGGAAAATAGTG CCTATT TTCCCTAGAATGTACCCATAGAGGAAAAATTT ]
[+] EMBL CD153198 [ ATTTT AAGGAAGGATTTTGAACAGAGGCATATGGTGTTAAGTAAAGATTAAGGATGATGATACTTTAACTTCGAATTATTATGGCTGTCATTTTTCATGGGTATTGACACGGTTATAAAAGATTGAGACCTTTCAACTTTGAGGGAGACTTACCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCCTTAAGAGAATTGGGTGTAA ATATAAGCGATTATGCACCTACAAATCGTC TTTTCCCCAGGTCCGGGGAAAATAGTG CCTATT TTCCCTAGAATGTACCCATAGAGGAAAAACTTATCGAACTTGACACTTTCAGTTTGCCAAAATTTACATTAACTCGTCCACCTTTCCCCTAAACTGGCATCAAATTGTCTACCTTACCCCTAAAATTAACACCACATTGTTTATTCTCACCGATCTCATGAGGACAAAATTTGTAGCCGAATTGTTGGGAAGTTCTGTTGTTAATCTTAGGGGAGATGTGATTAGAAACACATANACTTTCATGGGCTTTGTGGAAAACT]
consensusID : consensus_8237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence
[AATATATTTGGAAGCACTCGGGGAATAAAACGAAAGATATTGGAATTGTATTATGTACATAGGAGAAGATTCACAAAGGTTTAATCAGTTTATTTTACTCGTCGACTTTCAATTTTATCCAGAGAGAAATATAACCTGCTAAGAAGGCAGAAGTATCCACAAGGCACAATGGTTGCACTGTAATCTTTTAAGGCGACTTGACAATACGTTGTGAGCAGCATAAGGGCCATAATTCCAAGACAAGCGAATTTCTTGAAGGATACATGTCCAACAACTAACGTAGTTCCTAGCAATAGTTCGAAAACTCCCATAGATTGCATGTAGATCTGAGGACTAGGTATCACTCCAATATGCCGTAGTGGTGATACTTCAGTGAAATTCTTGAATGTCTTTAACATTTCCCGATAAAGTGTTGTATTCAAGCGCACTGTCTTTACTATACCAGGCAGTATGAACAGCAGTCCGAGAACTACAGTTGACACATGGGTAGCAAGATGTGACGCCATTCTGCTGTCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCAAATCGTCTTTTCCCCAGGTCCGGGGAAAATAGTGCCTATTTTCCCTAGAATGTACCCATAGAGGAAAAATTTATCGA]
[+] EMBL CD074846 [AATATATTTGGAAGCACTCGGGGAATAAAACGAAAGATATTGGAATTGTATTATGTACATAGGAGAAGATTCACAAAGGTTTAATCAGTTTATTTTACTCGTCGACTTTCAATTTTATCCAGAGAGAAATATAACCTGCTAAGAAGGCAGAAGTATCCACAAGGCACAATGGTTGCACTGTAATCTTTTAAGGCGACTTGACAATACGTTGTGAGCAGCATAAGGGCCATAATTCCAAGACAAGCGAATTTCTTGAAGGATACATGTCCAACAACTAACGTAGTTCCTAGCAATAGTTCGAAAACTCCCATAGATTGCATGTAGATCTGAGGACTAGGTATCACTCCAATATGCCGTAGTGGTGATACTTCAGTGAAATTCTTGAATGTCTTTAACATTTCCCGATAAAGTGTTGTATTCAAGCGCACTGTCTTTACTATACCAGGCAGTATGAACAGCAGTCCGAGAACTACAGTTGACACATGGGTAGCAAGATGTGACGCCATTCTGCTGTCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCAAATCGTCTTTTCCCCAGGTCCGGGGAAAATAGTGCCTATTTTCCCTAGAATGTACCCATAGAGGAAAAATTTATCGA]
consensusID : consensus_8237#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[CGCACTGTCTTTACTATACCAGGCAGTATGAACAGCAGTCCGAGAACTACAGTTGACACATGGGTAGCAAGATGTGACGCCATTCTGCTGTCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCAAATCGTCTTTTCCNCNNNNNNNNNNNNNNNNNTGCCTATTTTCCCTAGAATGTACCCATAGAGGAAAAATTTATCGAACTTGACACTTTCAGTTTGCCAAAATTTACATTAACTCGTCCACCCCTAAAATTAACACCACATTGTTTATTCTCACCGATCTCATGAGGACAAAATGTAGAATCTTAGGGGAGATGTGATTAGAAACACATAAACTTTCATGGGCTTTGTGGAAAACTACAGAATTCTTAACAACCATGGAGAGAAGCCGAGCCTGCCCAATCTCCCTACTTTGAGAAAATATTGGGNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCATATTCAAGGAAATTTGGGTGCCACTTTCCGAAAACGGTCAAAACTTTCTTAAAAATAGAAAGTTTGGGTGGAGATTAAAAGGATACGAAGATCCATCCTTCATTGTTATTAGCTAATTAGTTGAGGCACATAAGGTGAACTTGTTAGTTCAAATTTGA]
[-] EMBL CD081020 [CGCACTGTCTTTACTATACCAGGCAGTATGAACAGCAGTCCGAGAACTACAGTTGACACATGGGTAGCAAGATGTGACGCCATTCTGCTGTCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACTTTTGGGCGAATCAAATCGTCTTTTCCNCNNNNNNNNNNNNNNNNNTGCCTATTTTCCCTAGAATGTACCCATAGAGGAAAAATTTATCGAACTTGACACTTTCAGTTTGCCAAAATTTACATTAACTCGTCCACCCCTAAAATTAACACCACATTGTTTATTCTCACCGATCTCATGAGGACAAAATGTAGAATCTTAGGGGAGATGTGATTAGAAACACATAAACTTTCATGGGCTTTGTGGAAAACTACAGAATTCTTAACAACCATGGAGAGAAGCCGAGCCTGCCCAATCTCCCTACTTTGAGAAAATATTGGGNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCATATTCAAGGAAATTTGGGTGCCACTTTCCGAAAACGGTCAAAACTTTCTTAAAAATAGAAAGTTTGGGTGGAGATTAAAAGGATACGAAGATCCATCCTTCATTGTTATTAGCTAATTAGTTGAGGCACATAAGGTGAACTTGTTAGTTCAAATTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8237#0 CAGTGGTAAAGTTAACAATGATTTGTAGCTTTGACGCCGAAATCAGTACGTTTCAACCTA 60
consensus_8237#2 ------------------------------------------------------------
consensus_8237#1 ------------------------------------------------------------
consensus_8237#0 ATAATTGCGAAAGACCGATTAAAAAAGCAAGTAAGTGGTTGGAAATACGTTTATCACAAG 120
consensus_8237#2 -------------------------------------------CGCACTGTCTTTACTA- 16
consensus_8237#1 -------------AATATATTTGGAAGCACTCGGGGAATAAAACGAAAGAT-ATTGGAAT 46
* * * *
consensus_8237#0 ATTACCAGTTATTTTGTACTAAACTCACAGAACACCACTTTACCTGTT--GCGCGCTGAA 178
consensus_8237#2 --TACCAGGCAGTATGAACAGCAGTCCGAGAACTACAGTTGACACATG--GGTAGCAAGA 72
consensus_8237#1 TGTATTATGTACATAGGAGAAGATTCACAAAGGTTTAATCAGTTTATTTTACTCGTCGAC 106
** * * * * * ** * * * * * *
consensus_8237#0 -AT-GACATTATCTGGTAAGATTTTTCTACTGATA-GACAGAATATTAATCTAAGGTTGC 235
consensus_8237#2 TGT-GACGCCATTCTGC----TGTCCAAGCAAGCAAGAAAGGATAACAAAGGCGGACT-T 126
consensus_8237#1 TTTCAATTTTATCCAGAGAGAAATATAACCTGCTAAGAAGGCAGAAGTATCCACAA---- 162
* * ** * * * * ** * * * *
consensus_8237#0 TTCGGCGATTATGATCCTAAGTTAACCATTACTAGGTACTGGGA-GCTCATTCTTCTAAG 294
consensus_8237#2 TTGGGCGAATCAAATCGTCTTTTCCNCNNNNNNNNNNNNNNNNNTGCCTATTTTCCCTAG 186
consensus_8237#1 ---GGC-ACAATGGTTGCACTGTAATCTTTTAAGGCGACTTGACAATACGTTGT--GAGC 216
*** * * * * ** *
consensus_8237#0 AACATATACACTACAAAACATAAAAAGTGAAATACGCCCGGGTGTCTCAACCAGCAACTT 354
consensus_8237#2 AATGTACCCAT------AGAGGAAAAATTTATCGAACTTGACACTTTCAGTTTGCCAAAA 240
consensus_8237#1 AGCATAAGGGC----------CATAATTCCAAGACAAGCGAATTTCTTGAAGGATACATG 266
* ** * ** * * * * *
consensus_8237#0 TTTAACGTGTTACCCATTTGATATATTGTGTAAACTAGTACTTGATTGTTGTAATTAGAT 414
consensus_8237#2 TTTA---CATTAACTCGTCCACCCCTAAAATTAACACCACATTGTTTATTCTCACC-GAT 296
consensus_8237#1 TCCAACAACTAACGTAGTTCCTAGCAATAGTTCGAAAACTCCCATAGATTGCATGTAGAT 326
* * * * * * ** ***
consensus_8237#0 ATTTTAAGGA-AGGATTTTGAACA--GAGGCATATGGTGTTAAGTAAAGATTAAGGATGA 471
consensus_8237#2 CTCATGAGGACAAAATGTAGAATCTTAGGGGAGATGTGATTAGAAACACATAAACTTTCA 356
consensus_8237#1 CT---GAGGACTAGGTATCACTCCAATATGCCGTAGTGGTGATACTTCAGTGAAATTCTT 383
* **** * * * * * * * **
consensus_8237#0 TGATACTTTAACTTCGAATTATTATGGCTGTCATTTTTCATGGGTATTGACACGGTTATA 531
consensus_8237#2 TGG-GCTTTG----TGGAAAACTACAGA----ATTCTTAACAACCATGGAGAGAAGCCGA 407
consensus_8237#1 GAATGTCTTTA--ACATTTCCCGATAAAGTGTTGTATTCAAGCGCACTGTCTTTACTATA 441
** * * ** * * * *
consensus_8237#0 AAAGATTGAGACCTTTCAACTTTGAGGGA-GACTTACCCAAGCAAGCAAGAAAGGATAAC 590
consensus_8237#2 GCCTGCCCA-ATCTCCCTACTTTGAGAAA-ATATTGGGNNNNNNNNNNNNNNNNNNNNNN 465
consensus_8237#1 CCAGGCAGTATGAACAGCAGTCCGAGAACTACAGTTGACACATGGGTAGCAAGATGTGAC 501
* * *** *
consensus_8237#0 AAAGGCGGACTTTTGGGCGAATCCTTAAGAGAATTGGGTGTAAATATAAGCGATTATGCA 650
consensus_8237#2 NNTTTCCCATATTCAAGGAAATTTGGGTGCCACTTTCCGAAAACGGTCAAAACTTTCTTA 525
consensus_8237#1 GCCATTCTGCTGTCCAAGCAAGCAAGAAAGGA-----TAACAAAGGCGGACTTTTGGGCG 556
* ** * ** **
consensus_8237#0 CCTACAAATCGTCTTTTCCCCAGGTCCGGGGAAAATAGTGCCTATTTTCCCTAGAATGTA 710
consensus_8237#2 AAAATAGAAAGTTTGGGTGGAGATTAAAAGGATACGAAGATCCATCCTTCATTGTTATTA 585
consensus_8237#1 AAT-CAAATCGTCTTTTCCCCAGGTCCGGGGAAAATAGTGCCTATTTTCCCTAGAATGTA 615
* * ** * * *** * * * ** * * * * **
consensus_8237#0 CCCA--TAGAGGAAAAATTTAT--CGAACTTGACACTTTCAGTTTGCCAAAATTTACATT 766
consensus_8237#2 GCTAATTAGTTGAGGCACATAAGGTGAACTTGTTAGTTCAAATTTGA------------- 632
consensus_8237#1 CCCA--TAGAGGAAAAATTTAT--CGA--------------------------------- 638
* * *** ** * ** **
consensus_8237#0 AACTCGTCCACCTTTCCCCTAAACTGGCATCAAATTGTCTACCTTACCCCTAAAATTAAC 826
consensus_8237#2 ------------------------------------------------------------
consensus_8237#1 ------------------------------------------------------------
consensus_8237#0 ACCACATTGTTTATTCTCACCGATCTCATGAGGACAAAATTTGTAGCCGAATTGTTGGGA 886
consensus_8237#2 ------------------------------------------------------------
consensus_8237#1 ------------------------------------------------------------
consensus_8237#0 AGTTCTGTTGTTAATCTTAGGGGAGATGTGATTAGAAACACATANACTTTCATGGGCTTT 946
consensus_8237#2 ------------------------------------------------------------
consensus_8237#1 ------------------------------------------------------------
consensus_8237#0 GTGGAAAACT 956
consensus_8237#2 ----------
consensus_8237#1 ----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||