cluster # 8276

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Schistosoma mansoni
cluster # 8276 cluster # 8276 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8276#0 length = 731 sequences # 5

consensus_8276#1 length = 381 sequences # 1

consensusID : consensus_8276#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 731
fasta sequence

                              [AGATGAAGACGATGAGGAAGACACAAGTGAACGTCATAAGGGTGTTAGTCATTTAATTGAAGTATGCAATCCTAATCGTATAAAATCTAAAACAGTTGCTCCTTCACGAAAAGAAATCGCCGCATCTATCAAAGCTACAACTGATCCAATAAAATTACTATCAGAAACTGAATTAGCAGCTAACATAGCACGTCTTCAATTGGTTAGAAAAGAACGTGAATTAGCAGCTCAAAAACTTGAACAAGAAAAACAAGCCCGTGAAGCACAACGTGCAGCAACAGCAGCCGCAAAACGTACATCTCAAACAAAACCACAACAGAAAAGTGGTCGTAGTGGTTTGCAGACA-ACGGGCAGTAACAAAGAGCATCAAACAGTAAATCAAAGAAACAATATAAATTCATCAGAAATAACCGATGATAATTGACCAATTAATTGGTTGATCAGTGATCATTATCCTTAAGCCCTATGCTTTTCTGATATGATTCACGCACAAAGATGAGAGAGGAATAATAACTATGCTGCAAAGTTGCCAAACAGTCAAATCCAACTTTCCTTATTCGTTTCCCTATATTTTTTTTCGATACATGCCATAAAACTGATTTAGATTACATTCTAAATATGTTTTATAGCATTTTCGTAGTTGGAAAATCTCTATTACCTAACTCTCTCTGTATGAATAACTTAAAAAAGTTTTTAAATTGTATCCTTCTCAGTTAAAAGTGCCCTCTTTT]

[+] EMBL CD132190             [AGATGAAGACGATGAGGAAGACACAAGTGAACGTCATAAGGGTGTTAGTCATTTAATTGAAGTATGCAATCCTAATCGTATAAAATCTAAAACAGTTGCTCCTTCACGAAAAGAAATCGCCGCATCTATCAAAGCTACAACTGATCCAATAAAATTACTATCAGAAACTGAATTAGCAGCTAACATAGCACGTCTTCAATTGGTTAGAAAAGAACGTGAATTAGCAGCTCAAAAACTTGAACAAGAAAAACAAGCCCGTGAAGCACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD086159             [    GAAGACGATGAGGAAGACACAAGTGAACGTCATAAGGGTGTTAGTCATTTAATTGAAGTATGCAATCCTAATCGTATAAAATCTAAAACAGTTGCTCCTTCACGAAAAGAAATCGCCGCATCTATCAAAGCTACAACTGATCCAATAAAATTATTATCAGAAACTGAATTAGCAGCTAACATAGCACGTCTTCAATTGGTTAGAAAAGAACGTGAATTAGCAGCTCAATAACTTGAACAAGAAAAACAAGCCCGTGAAGCACAACGTGCAGCAACAGCAGCCGCAAAACGTACATCTCAAACAAAACCACAACAGAAAAGTGGTCGTAGTGGTTTGCAGACA ACGGGCAG                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD083304             [                                                       cgaggAGTATGCAATCCTAATCGTAT AAATCTAAAACAGTTGCTCCTTCACGAAAAGAAATCGCCGCATCTATCAAAGCTACAACTGATCCAATAAAATTACTATCAGAAACTGAATTAGCAGCTAACATAGCACGTCTTCAATTGGTTAGAAAAGAACGTGAATTAGCAGCTCAAAAACTTGAACAAGAAAAACAAGCCCGTGAAGCACAACGTGCAGCAACAGCAGCCGCAAAACGTACATCTCAAACAAAACCACAACAGAAAAGTGGTCGTAGTGGTAAACAG CATACGAACAGTAACAAAGAGCATCAAACAGTAAATCAAAGAAACAATATAAATTCATCAGAAATAACCGATGATAATTGACCAATTAATTGGTTGATCAGTGATCATTATCCTTAAGCCCTATGCTTTTCTGATATGATTCACGCACAAAGATGAGAGAGGAATAATAACTATGCTGCAAAGTTGCCAAACAGTCAAATCCAACTTTCCTTATTCGTTTCCCTATATNTTTTTTCGATACATGCCATAAAACTGATTTAGATTACAT                                                                                                                        ]
[-] EMBL CD139806             [                                                                                                                                                                                                                                                                                                                                                                                        AAATCAAAGAAACAATATAAATTCATCAGAAATAACCGATGATAATTGACCAATTAATTGGTTGATCAGTGATCATTATCCTTAAGCCCTATGCTTTTCTGATATGATTCACGCACAAAGATGAGAGAGGAATAATAACTATGCTGCAAAGTTGCCAAACAGTCAAATCCAACTTTCCTTATTCGTTTCCCTATATTTTTTTTCGATACATGCCATAAAACTGATTTAGATTACATTCTAAATATGTTTTATAGC                                                                                                     ]
[-] EMBL AI067458             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGCACAAAGATGAGAGAGGAATAATAACTATGCTGCAAAGTTGCCAAACAGTCAAATCCAACTTTCCTTATTCGTTTCCCTATATTTTTTTTGGATACATGCCATAAAACTGATTTAGATTACATTCTAAATATGTTTTATAGCATTTTCGTAGTTGGAAAATCTCTATTACCTAACTCTCTCTGTATGAATAACTTAAAAAAGTTTTTAAATTGTATCCTTCTCAGTTAAAAGTGCCCTCTTTT]




>consensus_8276#0
AGATGAAGACGATGAGGAAGACACAAGTGAACGTCATAAGGGTGTTAGTCATTTAATTGA
AGTATGCAATCCTAATCGTATAAAATCTAAAACAGTTGCTCCTTCACGAAAAGAAATCGC
CGCATCTATCAAAGCTACAACTGATCCAATAAAATTACTATCAGAAACTGAATTAGCAGC
TAACATAGCACGTCTTCAATTGGTTAGAAAAGAACGTGAATTAGCAGCTCAAAAACTTGA
ACAAGAAAAACAAGCCCGTGAAGCACAACGTGCAGCAACAGCAGCCGCAAAACGTACATC
TCAAACAAAACCACAACAGAAAAGTGGTCGTAGTGGTTTGCAGACAACGGGCAGTAACAA
AGAGCATCAAACAGTAAATCAAAGAAACAATATAAATTCATCAGAAATAACCGATGATAA
TTGACCAATTAATTGGTTGATCAGTGATCATTATCCTTAAGCCCTATGCTTTTCTGATAT
GATTCACGCACAAAGATGAGAGAGGAATAATAACTATGCTGCAAAGTTGCCAAACAGTCA
AATCCAACTTTCCTTATTCGTTTCCCTATATTTTTTTTCGATACATGCCATAAAACTGAT
TTAGATTACATTCTAAATATGTTTTATAGCATTTTCGTAGTTGGAAAATCTCTATTACCT
AACTCTCTCTGTATGAATAACTTAAAAAAGTTTTTAAATTGTATCCTTCTCAGTTAAAAG
TGCCCTCTTTT

consensusID : consensus_8276#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [ACTGACTGCTCTATTTAGTGTAGTTTGGATCGCCGATTTGTATCACTAGCTCTCACAAACAATATGCCTTAGAGCTGTACTAAGTAAATGCATTATTTTAATAGACGGTAATGAAAATAATCCACCGATTACATATATGTTGCATTTCATCAATATTATATGTAAACTGCATGCAAATTAGCTATTAAACTAAGTTTTTTTCTAAGGAAAAGTAGTAATGTTTTCTGTATTTCAGTCCTTCACGAAAAGAAATCGCCGCATCTATCAAAGCTACAACTGATCCAATAAAATTACTATCAGAAACTGAATTAGCAGCTAACATAGCATGTCTTCAATTGGTTAGAAAAGAACGTGAATTAGCAGCTCAAAAACTTGAACAAG]

[+] EMBL CD186829             [ACTGACTGCTCTATTTAGTGTAGTTTGGATCGCCGATTTGTATCACTAGCTCTCACAAACAATATGCCTTAGAGCTGTACTAAGTAAATGCATTATTTTAATAGACGGTAATGAAAATAATCCACCGATTACATATATGTTGCATTTCATCAATATTATATGTAAACTGCATGCAAATTAGCTATTAAACTAAGTTTTTTTCTAAGGAAAAGTAGTAATGTTTTCTGTATTTCAGTCCTTCACGAAAAGAAATCGCCGCATCTATCAAAGCTACAACTGATCCAATAAAATTACTATCAGAAACTGAATTAGCAGCTAACATAGCATGTCTTCAATTGGTTAGAAAAGAACGTGAATTAGCAGCTCAAAAACTTGAACAAG]




>consensus_8276#1
ACTGACTGCTCTATTTAGTGTAGTTTGGATCGCCGATTTGTATCACTAGCTCTCACAAAC
AATATGCCTTAGAGCTGTACTAAGTAAATGCATTATTTTAATAGACGGTAATGAAAATAA
TCCACCGATTACATATATGTTGCATTTCATCAATATTATATGTAAACTGCATGCAAATTA
GCTATTAAACTAAGTTTTTTTCTAAGGAAAAGTAGTAATGTTTTCTGTATTTCAGTCCTT
CACGAAAAGAAATCGCCGCATCTATCAAAGCTACAACTGATCCAATAAAATTACTATCAG
AAACTGAATTAGCAGCTAACATAGCATGTCTTCAATTGGTTAGAAAAGAACGTGAATTAG
CAGCTCAAAAACTTGAACAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8276#0      AGATGAAGACGATGAGGAAGACACAAGTGAACGTCATAAGGGTGTTAGTCATTTAATTGA 60
consensus_8276#1      -------------------------------------------ACTGACTGCTCTATTTA 17
                                                                   *      *  *** *

consensus_8276#0      AGTATGCAATCCTAATCGTATAAAATCTAAAACAGTTGCTCCTTCACGAAAAGAAATCGC 120
consensus_8276#1      G---TGTAGTTTGGATCGC---CGATTTGTATCACTAGCTC--TCACAAACAATATGCCT 69
                          ** * *    ****      ** *  * ** * ****  **** ** *  *  *  

consensus_8276#0      CGCATCTATCAAAGCTACAACTGATCCAATAAAATTACTATCAGAAACTGAATTAGCAGC 180
consensus_8276#1      TAGAGCTGTACTAAGTA-AATGCATTATTTTAATAGACGGTAATGAAAATAATCCACCGA 128
                         * ** *   *  ** **   **    * **   **  * *  **   ***   * * 

consensus_8276#0      TAACATAGCACGTCTTCAATTGGTTAGAAAAGAACGTGAATTAGCAGCTCAAAAACTTGA 240
consensus_8276#1      TTACATA-TATGT-TGCATTTCATCAATATTATATGTAAACT----GCATGCAAATT--A 180
                      * *****  * ** * ** **  * *  *    * ** ** *    **    *** *  *

consensus_8276#0      ACAAGAAAAACAAGCCCGTGAAGCACAACGTGCAGCAACAGCAGCCGCAAAAC-GTACAT 299
consensus_8276#1      GCTATTAAACTAAGTTTTTTTCTAAGGAAAAGTAGTAATGTTTTCTGTATTTCAGTCCTT 240
                       * *  ***  ***    *     *  *   * ** **      * * *   * ** * *

consensus_8276#0      CTCAAACA-AAACCACAACAGAAAA-GTGGTCGTAGTGGTTTGCAGACAACGGGCAGTAA 357
consensus_8276#1      CACGAAAAGAAATCGCCGCATCTATCAAAGCTACAACTGATC-CAATAAAATTACTATCA 299
                      * * ** * *** * *  **   *     *    *   * *  **   **    *  * *

consensus_8276#0      CAAAGAGCATCAAACAGTAAATCAAAGAAACAATATAAATTCATCAGAAATAACCGATGA 417
consensus_8276#1      GAAACTGAATTAG-CAGCTAAC--ATAGCATGTCTTCAATTGGTTAGAAAAGA---ACGT 353
                       ***  * ** *  ***  **   *    *     * ****  * *****  *   * * 

consensus_8276#0      TAATTGACCAATTAATTGGTTGATCAGTGATCATTATCCTTAAGCCCTATGCTTTTCTGA 477
consensus_8276#1      GAATTAGCAGCTCAAAAACTTGAACAAG-------------------------------- 381
                       ****  *   * **    **** **                                  

consensus_8276#0      TATGATTCACGCACAAAGATGAGAGAGGAATAATAACTATGCTGCAAAGTTGCCAAACAG 537
consensus_8276#1      ------------------------------------------------------------
                                                                                  

consensus_8276#0      TCAAATCCAACTTTCCTTATTCGTTTCCCTATATTTTTTTTCGATACATGCCATAAAACT 597
consensus_8276#1      ------------------------------------------------------------
                                                                                  

consensus_8276#0      GATTTAGATTACATTCTAAATATGTTTTATAGCATTTTCGTAGTTGGAAAATCTCTATTA 657
consensus_8276#1      ------------------------------------------------------------
                                                                                  

consensus_8276#0      CCTAACTCTCTCTGTATGAATAACTTAAAAAAGTTTTTAAATTGTATCCTTCTCAGTTAA 717
consensus_8276#1      ------------------------------------------------------------
                                                                                  

consensus_8276#0      AAGTGCCCTCTTTT 731
consensus_8276#1      --------------