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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8305#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 800 fasta sequence
[TGCCATAGCCATAACTGATAATAAAAATAATATCATGCCAAAGTCGTCTGCTAAAAGTGACAATTCAAAAAGTGGTAAGACGAGTGGGAAAAATTCAACTAATTCTAATAATAAAACTGATAATTCCTCATCGACCGGCTCTGGTAAACAGTCCAAGTTGGCAAATGCAGTGAAGGTACGTCATATACTAT-GCGAAAAACAAAGTAAATGCTTAGAAGCTTTAGAACAACTTAAAAATGGTAAACGTTTTAATCAAGTAGCAGAAATATACAGTGAAGATAAAGCTCGTTCAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGANCAGATCAAACTGAATCCGTCTAAATGCNAATGCAGACGTTN]
[-] EMBL CD140303 [TGCCATAGCCATAACTGATAATAAAAATAATATCATGCCAAAGTCGTCTGCTAAAAGTGACAATTCAAAAAGTGGTAAGACGAGTGGGAAAAATTCAACTAATTCTAATAATAAAACTGATAATTCCTCATCGACCGGCTCTGGTAAACAGTCCAAGTTGGCAAATGCAGTGAAGGTACGTCATATACTAT GCGAAAAACAAAGTAAATGCTTAGAAGCTTTAGAACAACTTAAAAATGGTAAACGTTTTAATCAAGTAGCAGAAATATACAGTGAAGATAAAGCTCGTTCAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTC ]
[+] EMBL CD082544 [ ggccagAATTTGGCACGAG GGTGAAGGTACGTCATATACTATNGCGAAAAACAAAGTAAATGCTTANAAGCTTTAGAACAACTTAAAAATGGTAAACGTTTTAATCAAGTAGCAGAAATATACAGTGAAGATAAAGCTCGTTCAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGANCAGATCAAACTGAATCCGTCTAAATGCNAATGCAGACGTTN]
[-] EMBL CD146391 [ TTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTC ]
consensusID : consensus_8305#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 739 fasta sequence
[GCCAGAATTTGGCACGAGGTCGTTAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGACAAGATCAAACTGAATCCGTCTAAATGCAAATGCAGACGTTTTTACATTGTAGAAACCTTCCAAATTGCAATATAAAACTAGATTGATACTTATAAAAACGGTATGTAAAATCTCTGTGTTCAGGGTGGCCGTAGTTTCATTGTGTGTATTTGCGTAGTTTATTCGCTTTATATTGGCTTCTTTTATCTTTGCGTCAAATGTTATTTTATACCTAATTTGTTACATCCGAATATATTCCCCCAACAAT]
[+] EMBL CD081091 [GCCAGAATTTGGCACGAGGTCGTTAGGGGGTGATCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGACAAGATCAAACTGAATCCGTCTAAATGCAAATGCAGACGTTTTTACATTGTAGAAACCTTCCAAATTGCAATATAAAACTAGATTGATACTTATAAAAACGGTATGTAAAATCTCTGTGTTCAGGGTGGCCGTAGTTTCATTGTGTGTATTTGCGTAGTTTATTCGCTCTATATTGGCTTCTTTTATCTTTGCGTC AATGTTA TTTATACCTAA TTGTTACATCCG ATATATTCCCCCAc ]
[-] EMBL CD074914 [ CATTTAACTTGCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGGATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTCCAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGACAAGATCAAACTGAATCCGTTTAAATGCAAATGCAGACGTTTTTACATTGTAGAAACCTTCCAAATTGCAATATAAAACTAGATTGATACTTATAAAAACGGTATGTAAAATCTCTGTGTTCAGGGTGGCCGTAGTTTCATTGTGTGTATTTGCGTAGTTTATTCGCTTTATATTGGCTTCTTTTATCTTTGCGTCAAATGTTATTTTATACCTAATTTGTTACATCCGAATATATTCCCCCAACAAT]
[-] EMBL CD076142 [ TAAAACACAATATGGATATCATA TATCATGG TGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATTTGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTACTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACATAATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTCTATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATCACACAGTATTTATCGGATTCACAATTCGAGATCATCGACAAGATCAAACTGAATCCGTCTAAATGCAAATGCAGACGTTTTTACATTGTAGAAACCTTCCAAATTGCAATATAAAACTAGATTGATACTTATAAAAACGGTATGTAAAATCTCTGTGTTCAGGGTGGCCGTAGTTTCATTGTGTGTATTTGCGTAGTTTATTCGCTTTATATTGGCTTCTTTTATCTTTGCGTCAAATGTTATTTTATACCTAATTTGTTACATCCGAATATATTCCCCCAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8305#0 TGCCATAGCCATAACTGATAATAAAAATAATATCATGCCAAAGTCGTCTGCTAAAAGTGA 60
consensus_8305#1 ------------------------------------------------------------
consensus_8305#0 CAATTCAAAAAGTGGTAAGACGAGTGGGAAAAATTCAACTAATTCTAATAATAAAACTGA 120
consensus_8305#1 ------------------------------------------------------------
consensus_8305#0 TAATTCCTCATCGACCGGCTCTGGTAAACAGTCCAAGTTGGCAAATGCAGTGAAGGTACG 180
consensus_8305#1 ------------------------------------------------------------
consensus_8305#0 TCATATACTATGCGAAAAACAAAGTAAATGCTTAGAAGCTTTAGAACAACTTAAAAATGG 240
consensus_8305#1 ------------------------------------------------------------
consensus_8305#0 TAAACGTTTTAATCAAGTAGCAGAAATATACAGTGAAGATAAAGCTCGTTCAGGGGGTGA 300
consensus_8305#1 --------------------------GCCAGAATTTGGCACGAGGTCGTT-AGGGGGTGA 33
* * * * ** ***** *********
consensus_8305#0 TCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTT 360
consensus_8305#1 TCTAGGATGGATGTCCCGTGGATCAATGGTTGGTGCATTTCAAGATGCAGCATTTAACTT 93
************************************************************
consensus_8305#0 GCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGG 420
consensus_8305#1 GCCTATATCAACTTTAGAAAATCCCAAGTATACTGATCCTCCAGTTAAAACACAATATGG 153
************************************************************
consensus_8305#0 ATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATT 480
consensus_8305#1 ATATCATATTATCATGGTTGAGGGAAGACGATAAAATATAAAACAAATAATCCCTTCATT 213
************************************************************
consensus_8305#0 TGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTA 540
consensus_8305#1 TGTTTGATTGAGGTGTACTATTTTTATAATACACTTACATGTATTATAGTATACAGTGTA 273
************************************************************
consensus_8305#0 CTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACAT 600
consensus_8305#1 CTTGTTAAATATTAAATGTGAATAACATCAGTTATTTATATTTCGCATGGCATAAAACAT 333
************************************************************
consensus_8305#0 AATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTC 660
consensus_8305#1 AATAAATGTCGTTGTACGTTCATTGATAGCAAGTACAATAATTTTTTGACAGCATATCTC 393
************************************************************
consensus_8305#0 TATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATC 720
consensus_8305#1 TATAAAGGATAACCCAAACTTTTACGTCATCTATCCTACAGTATGTAATTAACCATAATC 453
************************************************************
consensus_8305#0 ACACAGTATTTATCGGATTCACAATTCGAGATCATCGANCAGATCAAACTGAATCCGTCT 780
consensus_8305#1 ACACAGTATTTATCGGATTCACAATTCGAGATCATCGACAAGATCAAACTGAATCCGTCT 513
************************************** ********************
consensus_8305#0 AAATGCNAATGCAGACGTTN---------------------------------------- 800
consensus_8305#1 AAATGCAAATGCAGACGTTTTTACATTGTAGAAACCTTCCAAATTGCAATATAAAACTAG 573
****** ************
consensus_8305#0 ------------------------------------------------------------
consensus_8305#1 ATTGATACTTATAAAAACGGTATGTAAAATCTCTGTGTTCAGGGTGGCCGTAGTTTCATT 633
consensus_8305#0 ------------------------------------------------------------
consensus_8305#1 GTGTGTATTTGCGTAGTTTATTCGCTTTATATTGGCTTCTTTTATCTTTGCGTCAAATGT 693
consensus_8305#0 ----------------------------------------------
consensus_8305#1 TATTTTATACCTAATTTGTTACATCCGAATATATTCCCCCAACAAT 739
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||