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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 869 fasta sequence
[CTACAGGCCAANAATTTGGCACGAGGGCAATCTAGAAACTATTAGCCGAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTTTGGGCTCTCAAACATGTACTTTGGACTCGTTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAAATTTGAGCTACTTAAAACCTGCTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGTAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATGGTTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGTCCTTTATCATTTTGAACAAAAAGAAGTTGTAAATCATCCTGATTATAAGCAAATTATTAATGTTTTAAAAATTAATCCGAAAGATGTACCAGAATTTGCTACGGTTTTATCAGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTAGTATTTGATAATATTCAATAAAG-AAGTAATGCTCATTATG-AAGT-AAGTTCAACTTCCTAATCTTC-AAAAAAAAAGGTTTTTTTTG-TGG-TTATAGTACTTTG-TTGGTTGTC-TAANGA-TNTATACCA--TTTAAATG-AC-TTTATGG-AAT-ATAG-TCTTC-TC-ATGAAA--TGT-CT-AACTG-TCG-TTCTACTGCTAGACTCT]
[+] EMBL CD081135 [CTACAGGCCAANAATTTGGCACGAGGGCAATCTAGAAACTATTAGCCGAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTTTGGGCTCTCAAACATGTACTTTGGACTCGTTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAAATTTGAGCTACTTAAAACCTGCTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGTAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATGGTTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGTCCTTTATCATTTTGAACAAAAAGAAGTTGTAAATCATCCTGATTATAAGCAAATTATTAATGTTTTAAAAATTAATCCGAAAGATGTACCAGAATTTGCTACGGTTTTATCAGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTAGTATTTGATAATATTCAATAAAGAAAGT ATGCTCATTATGAAAGT AAGTTCAACTTCCTAATCTTC AAAAAAAAAGGTTTTTTTTG TGG TTATAGTACTTTG TTGGTTGTC TAANGA TNTATACCA TTTAAATG AC TTTATGG AAT ATAG TCTTC TC ATGAAA TGT CT AACTG TCG TTCTACTG ]
[-] EMBL CD143028 [ aTTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAAATTTAAGTTACTTAAAACCTGTTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGTAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATG ]
[-] EMBL CD074958 [ nATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGTAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATGGTTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGTCCTTTATCATTTTGAACAAAAAGAAGTTGTAAATCATCCTGATTATAAGCAAATTATTAATGTTTTAAAAATTAATCCGAAAGATGTACCAGAATTTGCTACGGTTTTATCAGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTAGTATTTGATAATATTCAATAAAG AAGTAATGCTCATTATG AAGTAAAGTTCAACTTCCTAATCTTCAAAAAAAAAAGGTTTTTTTTGTTGGTTTATAGTACTTTGTTTGTTTGTCTTAGTGATTTTATACCATTTTTAATTGAACTTTTATGGAAATAATAGTTCTTCTTCAATGAAAATTGTACTAAACTGTTCGTTTCT TAACTAGACTCT]
[+] EMBL SM719 [ TTAATGGGAATTACA TCGATGAAGGTGGTGTAAAAGAA TTTTAGATGGACA TATTTGGATGGAGATC TTA TTAGATCGTGAACGTAAGACATNT AAGGTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTC TTACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAATATGTCTGGAGATGGTTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGTCCTTTATCATTTTGAACAGAAAGAAGTTGTAAATCATCCTGATTATAAGC AATTATTGATGTTTTAAAAA TAATCCGAAAGATGTACCAGAA TTGCTACTGTTTTATCAGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTGGATA TTGATAATATTCAATAAAG AAGTAATGCTCA TATG AAG TCAACTTCCTAATCTTC AAAAAAGGTTT ]
consensusID : consensus_8321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence
[TTTTTTTTTTTTGTTTTCAATGTGCGTTATTGATTGGTAGCAATCTAGAAACTATTAGCTGAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTTTGGGCTCTCAAACATGTACTTTGGACTCATTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAATTTAAGTTACTTAAAACCTGTTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGAAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAGCTGGGTCGTTCTTTAAATTCAA]
[-] EMBL SMAA33972 [TTTTTTTTTTTTGTTTTCAATGTGCGTTATTGATTGGTAGCAATCTAGAAACTATTAGCTGAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTTTGGGCTCTCAAACATGTACTTTGGACTCATTTTGGCGAGATCAAACATGTATCATTACATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAATTTAAGTTACTTAAAACCTGTTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGGTGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACGAAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTTACTGACGAAGCTGGGTCGTTCTTTAAATTCAA]
consensusID : consensus_8321#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence
[TATAAGCAATTTTGGTGTTTTAAAATTAACCGGAAAGTGTCCCAGATTTGCTACTGTTTTATCAGGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTGATATTTGATAATATTCAATAAAGAAGTAATGCTCATTATGAAGTTCAACTTCCTAATCTTCAAAAAAAAGGTTTTTTGTTGTTGGTTTATAGTACTTTGTTTGTTTGCCTTAGTGATTTTATACCATTCTATTGAACTTTTATGGAAATAATAGTTCTTCTTCAATGAAAATTGTTCTAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL AI395475 [TATAAGCAATTTTGGTGTTTTAAAATTAACCGGAAAGTGTCCCAGATTTGCTACTGTTTTATCAGGAAGAATGTGATGATGCTTGTAAAATGTGAATCTACTTTGATATTTGATAATATTCAATAAAGAAGTAATGCTCATTATGAAGTTCAACTTCCTAATCTTCAAAAAAAAGGTTTTTTGTTGTTGGTTTATAGTACTTTGTTTGTTTGCCTTAGTGATTTTATACCATTCTATTGAACTTTTATGGAAATAATAGTTCTTCTTCAATGAAAATTGTTCTAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8321#0 -------------CTACAGGCCAANAATTTGGCACGAGGGCAATCTAGAAACTATTAGCC 47
consensus_8321#1 TTTTTTTTTTTTGTTTTCAATGTGCGTTATTGATTGGTAGCAATCTAGAAACTATTAGCT 60
consensus_8321#2 ----------------------------------TATAAGCAATTTTGGTGTTTTAAAAT 26
***** * * * * *
consensus_8321#0 GAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTT 107
consensus_8321#1 GAGCCGCAATGACATCTCCTTTACTCTCGAAGGTTGGTACTTGCATTGTACATTCTGCTT 120
consensus_8321#2 TAACCGGAAAG---TGTCCCAGATTTGCTACTGTT-----TTATCAGGAAGAATGTGATG 78
* *** ** * * *** * * * * *** ** * * * * ** *
consensus_8321#0 TGGGCTCTCAAACATGTACTTTGGACTCGT-TTTGGCGAGATCAAACAT-GTATCATTAC 165
consensus_8321#1 TGGGCTCTCAAACATGTACTTTGGACTCAT-TTTGGCGAGATCAAACAT-GTATCATTAC 178
consensus_8321#2 ATGCTTGTAAAATGTG-AATCTACTTTGATATTTGATAATATTCAATAAAGAAGTAATGC 137
* * * *** ** * * * * * **** * ** ** * * * * * *
consensus_8321#0 ATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAAATTTGAGCTACTT 225
consensus_8321#1 ATTCTTTCGTCGTTTGGGATGTAAATTTTGCCGACTGGAAGCTAAAA-TTTAAGTTACTT 237
consensus_8321#2 -TCATTATGAAGTTCAACTTCCTAATCTT--CAAAAAAAAGGTTTT--TTGTTGTTGGTT 192
* ** * *** * *** ** * * *** * ** * * **
consensus_8321#0 AAAACCTGCTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGG 285
consensus_8321#1 AAAACCTGTTTTGGATGCACGCAATATCAAATTAATGGGAATTACATTCGATGAAGGTGG 297
consensus_8321#2 TATAG-TACTTTGTTTGTTTGCCTTAGTGATTTTATA------CCATTCTATTGAACTTT 245
* * * **** ** ** ** * ** ** ***** ** * *
consensus_8321#0 TGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACG 345
consensus_8321#1 TGTAAAAGAATTTTTAGATGGACATTATTTTGATGGAGATCTTTATTTAGATCGTGAACG 357
consensus_8321#2 TATGGAAATA-------ATAGTTCTT-CTTCAATGAAAATTGTTCTAAAAAAAAAAAAAA 297
* * ** * ** * ** ** *** * ** ** * * * **
consensus_8321#0 TAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTT 405
consensus_8321#1 AAAGACATATAAAGCTTTAGAATACAAAAAAGTCTCCGCCTGTTCTGGTTTCTGTTCTTT 417
consensus_8321#2 AAAAAAA----------------------------------------------------- 304
** * *
consensus_8321#0 ACTGACGAAAGCTGGTCGTTCTTTAAATTCAAAGGCAAAGGCTGCTAATATACCTGGTAA 465
consensus_8321#1 ACTGACGAAGCTGGGTCGTTCTTTAAATTCAA---------------------------- 449
consensus_8321#2 ------------------------------------------------------------
consensus_8321#0 TATGTCTGGAGATGGTTGGCAAACTGGTGGACTTCTTGTAGTCGAAAAAGGTGGTAAAGT 525
consensus_8321#1 ------------------------------------------------------------
consensus_8321#2 ------------------------------------------------------------
consensus_8321#0 CCTTTATCATTTTGAACAAAAAGAAGTTGTAAATCATCCTGATTATAAGCAAATTATTAA 585
consensus_8321#1 ------------------------------------------------------------
consensus_8321#2 ------------------------------------------------------------
consensus_8321#0 TGTTTTAAAAATTAATCCGAAAGATGTACCAGAATTTGCTACGGTTTTATCAGAAGAATG 645
consensus_8321#1 ------------------------------------------------------------
consensus_8321#2 ------------------------------------------------------------
consensus_8321#0 TGATGATGCTTGTAAAATGTGAATCTACTTTAGTATTTGATAATATTCAATAAAGAAGTA 705
consensus_8321#1 ------------------------------------------------------------
consensus_8321#2 ------------------------------------------------------------
consensus_8321#0 ATGCTCATTATGAAGTAAGTTCAACTTCCTAATCTTCAAAAAAAAAGGTTTTTTTTGTGG 765
consensus_8321#1 ------------------------------------------------------------
consensus_8321#2 ------------------------------------------------------------
consensus_8321#0 TTATAGTACTTTGTTGGTTGTCTAANGATNTATACCATTTAAATGACTTTATGGAATATA 825
consensus_8321#1 ------------------------------------------------------------
consensus_8321#2 ------------------------------------------------------------
consensus_8321#0 GTCTTCTCATGAAATGTCTAACTGTCGTTCTACTGCTAGACTCT 869
consensus_8321#1 --------------------------------------------
consensus_8321#2 --------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||