cluster # 8331

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Schistosoma mansoni
cluster # 8331 cluster # 8331 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8331#0 length = 723 sequences # 3

consensus_8331#1 length = 630 sequences # 3

consensusID : consensus_8331#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 723
fasta sequence

                              [GCCAANATACTGGTACGAGGGCGGAAATTGATGAAACGAGTTTATCAGGAGTACCTGTGTCAAAAGAAACTGGTAATCCAGTGGAATGGATTGAAGAAGAGAATTACATGTTTAAACTGTCTTCATTTAAAAATGATTTACACAAATGGCTAGATTCAGGAGTATTTCCTAAGTCGTCCAATCAATCAGTTTGGTGTAATATGGCACATAATATGGTGGATAATTCTCAAGATATATCTATTTCAAGACCAAAAAGTCGTTCAGATTGGGGTATACATGTTCCTGGTGATAATGAACAAATTGTTTACGTATGGTTCGATGCTCTGATCAACTACTTAACAGTTACAGGCTTCCCATGGTCAAATGTTAATGATGGTAGTTTTAAACAATCTCTCTGGCCACCAGATGTACAGTTTTTGGGAAAAGACATAATACGATTTCATGCAGTTCTCTGGCCTGCTTTATTAATGGCTGTCAATCTACCGTTGCCACGACTTCTAATTTGTCATCATCATGTACTTGTGGATAATGTTAAGATGTCTAAAAGTAGAGGTAACCAAGTCGATCCGATTGTTGAACAGTCTGCTTTATTGTCGGACGAATTAAACAGCAATGTTATAACACCTGCTGAATCAGATCTTCTTCGTTATGTTNTGCTTCGCCTTCCTTTGCT-ACATATGATGGTACTTATAGTCGTGAAATGGCTCGTA-AATGATTAACACA]

[+] EMBL CD082282             [GCCAANATACTGGTACGAGGGCGGAAATTGATGAAACGAGTTTATCAGGAGTACCTGTGTCAAAAGAAACTGGTAATCCAGTGGAATGGATTGAAGAAGAGAATTACATGTTTAAACTGTCTTCATTTAAAAATGATTTACACAAATGGCTAGATTCAGGAGTATTTCCTAAGTCGTCCAATCAATCAGTTTGGTGTAATATGGCACATAATATGGTGGATAATTCTCAAGATATATCTATTTCAAGACCAAAAAGTCGTTCAGATTGGGGTATACATGTTCCTGGTGATAATGAACAAATTGTTTACGTATGGTTCGATGCTCTGATCAACTACTTAACAGTTACAGGCTTCCCATGGTCAAATGTTAATGATGGTAGTTTTAAACAATCTCTCTGGCCACCAGATGTACAGTTTTTGGGAAAAGACATAATACGATTTCATGCAGTTCTCTGGCCTGCTTTATTAATGGCTGTCAATCTACCGTTGCCACGACTTCTAATTTGTCATCATCATGTACTTGTGGATAATGTTAAGATGTCTAAAAGTAGAGGTAACCAAGTCGATCCGATTGTTGAACAGTCTGCTTTATTGTCGGACGAATTAAACAGCAATGTTATAACACCTGCTGAATCAGATCTTCTTCGTTATGTTNTGCTTCGCCTTCCTTTGCT ACATATGATGGTACTTATAGTCGTGAAATGGCTCGTA AATGATTA     ]
[+] EMBL CD158028             [                                                        GTGTCAAAAGAAACTGGTAATCCAGTGGAATGGATTGAAGAAGAGAATTACATGTTTAAACTGTCTTCATTTAAAAATGATTTACACAAATGGCTAGATTCAGGAGTATTTCCTAAGTCGTCCAATCAATCAGTTTGGTGTAATATGGCACATAATATGGTGGATAATTCTCAAGATATATCTATTTCAAGACCAAAAAGTCGTTCAGATTGGGGTATACATGTTCCTGGTGATAATGAACAA                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD143046             [                                                                                                                                                                                                                                                                                                                                                                                                                              TTTTGGGAAAAGACATAATACGATTTCATGCAGTTCTCTGGCCTGCTTTATTAATGGCTGTCAATCTACCGTTGCCACGACTTCTAATTTGTCATCATCATGTACTTGTGGATAATGTTAAGATGTCTAAAAGTAGAGGTAACCAAGTCGATCCGATTGTTGAACAGTCTGCTTTATTGTCGGACGAATTANACAGCAATGTTATAACACCTGCTGAATCAGATCTTCTTCGTTATGTTTTGCTTCGCCTTCCTTTGCTAACATATGATGGTACTTATAGTCGTGAAATGNCTCGTANAATGATTAACACA]




>consensus_8331#0
GCCAANATACTGGTACGAGGGCGGAAATTGATGAAACGAGTTTATCAGGAGTACCTGTGT
CAAAAGAAACTGGTAATCCAGTGGAATGGATTGAAGAAGAGAATTACATGTTTAAACTGT
CTTCATTTAAAAATGATTTACACAAATGGCTAGATTCAGGAGTATTTCCTAAGTCGTCCA
ATCAATCAGTTTGGTGTAATATGGCACATAATATGGTGGATAATTCTCAAGATATATCTA
TTTCAAGACCAAAAAGTCGTTCAGATTGGGGTATACATGTTCCTGGTGATAATGAACAAA
TTGTTTACGTATGGTTCGATGCTCTGATCAACTACTTAACAGTTACAGGCTTCCCATGGT
CAAATGTTAATGATGGTAGTTTTAAACAATCTCTCTGGCCACCAGATGTACAGTTTTTGG
GAAAAGACATAATACGATTTCATGCAGTTCTCTGGCCTGCTTTATTAATGGCTGTCAATC
TACCGTTGCCACGACTTCTAATTTGTCATCATCATGTACTTGTGGATAATGTTAAGATGT
CTAAAAGTAGAGGTAACCAAGTCGATCCGATTGTTGAACAGTCTGCTTTATTGTCGGACG
AATTAAACAGCAATGTTATAACACCTGCTGAATCAGATCTTCTTCGTTATGTTNTGCTTC
GCCTTCCTTTGCTACATATGATGGTACTTATAGTCGTGAAATGGCTCGTAAATGATTAAC
ACA

consensusID : consensus_8331#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 630
fasta sequence

                              [TGTGATTTGTTGCATGTTTTCTCAACCTGTACTCCGAACGGCTGCTGGTAATCATTCACGATGTT-TTGCATCTACTCGTTCTGAGAAGCCATTTTTTATTACGTGTCCAATATTTTACGTTAATGCAAAACCTCATTTGGGCCATGCATATACCACATGTTTAGCTGACGCATGGGCAAGATATAGTTGTTTGCGTAATCAGCCAATACTGAAACCTTTCCAACAAGATTATATTGCGTCCACTTATTCGCCTGTGTTTGATTACTGCAATCTCAATAAAACGTTTTTATCTTGTGGGACTGATGAACATGGATCTAAAGTTCGTCGTGCTGCAACTGTCAATAATCTTGATCCATTGCAGTATTGTAATCAAATGAGTCCTTTATTTGAGACTCTTTGTCATGCTACTCACGTAAAATACAATGATTTCATCCGTACTACTGAAACTAGGCATGTGAAAGCTGTTCATGAGTTTTGGAACCGTTTAAATGCCAGTGGTAATGTTTATCGAAGCAAATATTCTGGTTGGTATTGTGTTTCAGACGAAGCATTTTATACACCATGGGAAATTGATGAAACGAGTTTATCAGGAGTACCTGTGTCAAAAGAAACTGGTAATCCAGTGGAATG]

[+] EMBL AI975462             [TGTGATTTGTTGCATGTTTTCTCAACCTGTACTCCGAACGGCTGCTGGTAATCATTCACGATGTT TTGCATCTACTCGTTCTGAGAAGCCATTTTTTATTACGTGTCCAATATTTTACGTTAATGCAAAACCTCATTTGGGCCATGCATATACCACATGTTTAGCTGACGCATGGGCAAGATATAGTTGTTTGCGTAATCAGCCAATACTGAAACCTTTCCAACAAGATTATATTGCGTCCACTTATTCGCCTGTGTTTGATTACTGCAATCTCAATAAAACGTTTTTATCTTGTGGGACTGATGAACATGGATCTAAAGTTCGTCGTGCTGCAACTGTCAATAATCTTGATCCATTGCAGTATTGTAATCAAATGAGTCCTTTATTTGAGACTCTTTGTCATGCTACTCACGTAAAATACAATGATTTCATCCGTACTACTGAAACTAGGCATGTGAAAGCTGTTCATGAGTTTTGGAACCGTTTAAATGCCAGTGGTAATGTTTATCGAAGCAAATATTCTGGTTGGTATTGTGTTTCAGACGAAGCATTTTATACACCATGGGAAATTGATGAAACGAGTTTATCAGGAGTACCTGTGTCAAAAGAAACTGGTAATCCAGTGGAATG]
[+] EMBL AW017221             [TGTGATTTGTTGCATGTTTTCTCAACCTGTACTCCGAACGGCTGCTGGTAATCATTCACGATGTT TTGCATCTACTCGTTCTGAGAAGCCATTTTTTATTACGTGTCCAATATTTTACGTTAATGCAAAACCTCATTTGGGCCATGCATATACCACATGTTTAGCTGACGCATGGGCAAGATATAGTTGTTTGCGTAATCAGCCAATACTGAAACCTTTCCAACAAGATTATATTGCGTCCACTTATTCGCCTGTGTTTGATTACTGCAATCTCAATAAAACGTTTTTATCTTGTGGGACTGATGAACATGGATCTAAAGTTCGTCGTGCTGCAACTGTCAATAATCTTGATCCATTGCAGTATTGTAATCAAATGAGTCCTTTATTTGAGACTCTTTGTCATGCTACTCACGTAAAATACAATGATTTCATCCGTACTACTGAAACTAGGCATGTGAAAGCTGTTCATGAGTTTTGGAACCGTTTAAATGCCAGTGGTAATGT                                                                                                                              ]
[+] EMBL AI976454             [    ATTTGTTGCATGTTTTCTCAACCTGTACTCCGAACGGCTGCTGGTAATCATTCACGATGTTCTTGCATCTACTCGTTCTGAGAAGCCATTTTTTATTACGTGTCCAATATTTTACGTTAATGCAAAACCTCATTTGGGCCATGCATATACCACATGTTTAGCTGACGCATGGGCAAGATATAGTTGTTTGCGTAATCAGCCAATACTGAAACCTTTCCAACAAGATTATATTGCGTCCACTTATTCGCCTGTGTTTGATTACTGCAATCTCAATAGAACGTTCTTATCTTGTGGGACTGATGAACATGGATCTAAAGTTCGTCGTGCTGCAACTGTCAATAATCTTGATCCATTGCAGTATTGTAATCAAATGAGTCCTTTATTTGAGACTCTTTGTCATGCTACTCACGTAAAATACAATGATTTCATCCGTACTACTGAAACTAGGCATGTGAAAGCTGTTCATGAGTTCTGGAACCGTTTAAATGCCAGCGGTAAT                                                                                                                                ]




>consensus_8331#1
TGTGATTTGTTGCATGTTTTCTCAACCTGTACTCCGAACGGCTGCTGGTAATCATTCACG
ATGTTTTGCATCTACTCGTTCTGAGAAGCCATTTTTTATTACGTGTCCAATATTTTACGT
TAATGCAAAACCTCATTTGGGCCATGCATATACCACATGTTTAGCTGACGCATGGGCAAG
ATATAGTTGTTTGCGTAATCAGCCAATACTGAAACCTTTCCAACAAGATTATATTGCGTC
CACTTATTCGCCTGTGTTTGATTACTGCAATCTCAATAAAACGTTTTTATCTTGTGGGAC
TGATGAACATGGATCTAAAGTTCGTCGTGCTGCAACTGTCAATAATCTTGATCCATTGCA
GTATTGTAATCAAATGAGTCCTTTATTTGAGACTCTTTGTCATGCTACTCACGTAAAATA
CAATGATTTCATCCGTACTACTGAAACTAGGCATGTGAAAGCTGTTCATGAGTTTTGGAA
CCGTTTAAATGCCAGTGGTAATGTTTATCGAAGCAAATATTCTGGTTGGTATTGTGTTTC
AGACGAAGCATTTTATACACCATGGGAAATTGATGAAACGAGTTTATCAGGAGTACCTGT
GTCAAAAGAAACTGGTAATCCAGTGGAATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8331#0      GCCAANATACTGGTACGAGGGCGGAAATTGATGAAACGAGTTTATCAGGAGTACCTGTGT 60
consensus_8331#1      ------------------------------------------------------------
                                                                                  

consensus_8331#0      CAAAAGAAACTGGTAATCCAGTGGAATGGATTGAAGAAGAGAATTACATGTTTAAACTGT 120
consensus_8331#1      -----------TGTGATTT-GTTGCATGTTTTCTCAACCTGTACTCCGAACGGCTGCTGG 48
                                  ** **   ** * ***  **    *   * * * *         *** 

consensus_8331#0      CTTCATTTAAAAATGATTTACA-CAAATGGCTAGATTCAGGAGTATTTCCTAAGTCGTCC 179
consensus_8331#1      TAATCATTCACGATGTTTTGCATCTACTCGTTCTGAGAAGCCATTTTTTATTACGTGTCC 108
                            ** *  *** *** ** * * * * *      **   * ***  * *   ****

consensus_8331#0      AATCAATCAGTTTGGTGTAATATGGCACATAATATGGTGGATAATTCTCAAGATATATCT 239
consensus_8331#1      AATATTTTACGTTAATGCAAAACCTCATTTGG-GCCATGCATATACCACATGTT-TAGCT 166
                      ***   * *  **  ** ** *   **  *       ** ***   * ** * * ** **

consensus_8331#0      ATTTCAAGACCAAAA---AGTCGTTCA---GATTGGGGTATACATGTTCCTGGTGATAAT 293
consensus_8331#1      GACGCATGGGCAAGATATAGTTGTTTGCGTAATCAGCCAATACTGAAACCTTTCCAACAA 226
                          ** *  *** *   *** ***      **  *   ****     ***    *  * 

consensus_8331#0      GAACAAATTGTTTACGTATGGTTCGATGCTCTGATCAACTACTTAACAGTTACAGGCTTC 353
consensus_8331#1      GATTATATTGCGTCCACTTATTCGCCTGTGTTTGATTACTGCAATCTCAATAAAACGTTT 286
                      **  * ****  * *   *  *    **   *     *** *        ** *   ** 

consensus_8331#0      CCATGGTCAAATGTTAATGATGGTAGTTTTAAACAATCTCTCTGGCCACCAG-ATGTACA 412
consensus_8331#1      TTATCTTGTGGGACTGATGAACATGGATCTAAA--GTTCGTCGTGCTGCAACTGTCAATA 344
                        **  *       * ****   * * * ****   *   **  **  * *   *  * *

consensus_8331#0      GTTTTTGGGAAAAGACATAATACGATTTCATGCAGTTCTCTGGCCTGCTTTATTAATGGC 472
consensus_8331#1      ATCTTGATCCATTGCAGTATTGTAATCAAATG-AGTCCTTTA------TTTGAGACTCTT 397
                       * **     *  *   ** *   **   *** *** ** *       ***   * *   

consensus_8331#0      TGTCAATCTACCGTTGCCACGACTTCTAATTTGTCATCATCATGTACTTGTGGATAATGT 532
consensus_8331#1      TGTCATGCTACT-----CACG-----TAAAATACAATGATTTCATCCGTACTACTGAAAC 447
                      *****  ****      ****     ***  *   ** **    * * *     * *   

consensus_8331#0      TAAGATGTCTAAAAGTAGAGGTAACCAAGTCGATCCGATTGTTGAACAGTCTGCTTTATT 592
consensus_8331#1      TAGG-CATGTGAAAGCTG---TTCATGAGTTT-TGGAACCGTTTAAATGCCAGTGGTAAT 502
                      ** *   * * ****  *   *     ***   *   *  *** **  * * *   ** *

consensus_8331#0      GTCGGACGAATTAAACAGCAATGTTA-TAACACCTGCTGAATCAGATCTTCTTCGTTATG 651
consensus_8331#1      GTTTATCGAAGCAAATATTCTGGTTGGTATTGTGTTTCAGACGAAGCATTTTATACACCA 562
                      **    ****  *** *     ***  **     *     *  *    ** *        

consensus_8331#0      TTNTGCTTCGCCTTCCTTTGCTACATATGATGGTACTTATAGTCGTGAAATGGCTCGTAA 711
consensus_8331#1      TGGGAAATTGATGAAACGAGTTTATCAGGA--GTACCTGT-GTCA-AAAGAAACTGGTAA 618
                      *      * *         * *    * **  **** * * ***   **    ** ****

consensus_8331#0      ATGATTAACACA 723
consensus_8331#1      TCCAGTGGAATG 630
                         * *   *