cluster # 8361

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Schistosoma mansoni
cluster # 8361 cluster # 8361 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8361#0 length = 635 sequences # 3
consensus_8361#1 length = 381 sequences # 1

consensus_8361#2 length = 306 sequences # 1
consensus_8361#3 length = 97 sequences # 1

consensusID : consensus_8361#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 635
fasta sequence

                              [TACTGCTATGGTGGAATGCGTAAGAAGA-CAGAAATCCAACCACCCTACCTACCTGATCTCACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCTGGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGTCCACTAATTCGTCTTTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGATGATCCATCTGTGCGGGCTGTTCTAGGAATTCGTGGTTCCGTCGTTGCAGACGTGGCTCATATTCTCCTGGAATATGGTCACCAAGTTTTTGGCATACATTTCAAGTCGCTCTTTCAGCTTGCCCAACATCTTGTTGCTAACCGTTATGTTAATTCCAGGTCCAAACATGCTTTTGCTTTGATCGCTCATGCTGCTAATCCTCCGAGCTCCTTTTCACCACCACCCTCTACAGCCCTTGCTGAAATGCTTCANAAAGGCTCTGTTAAATCAGCATTCGGTAAAATACANAACANACGTCAGAATTCGTCNTAC-AGTGATTTATCATCCTGTAAATCGGAATGTACTAAAAATGAAAGTTTTCATGCACCTTCAACAAACAATGTTGACTCCCCAGT]

[+] EMBL CD096073             [TACTGCTATGGTGGAATGCGTAAGAAGA CAGAAATCCAACCACCCTACCTACCTGATCTCACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCTGGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGTCCACTAATTCGTCTTTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGATGATCCATCTGTGCGGGCTGTTCTAGGAATTCGTGGTTCCGTCGTTGCAGACGTGGCTCATATTCTCCTGGAATATGGTCACCAAGTTTTTGGCATACATTTCAAGTCGCTCTTTCAGCTTGCCCAACATCTTGTTGCTAACCGTTATGTTAATTCCAGGTCCAAACATGCTTTTGCTTTGATCGCTCATGCTGCTAATCCTCCGAGCTCCTTTTCACCACCACCCTCTACAGCCCTTGCTGAAATGCTTCANAAAGGCTCTGTTAAATCAGCATTCGGTAAAATACANAACANACGTCAGAATTCGTCNTAC AGTGATTTATCATCCTGTAAATCGGAATGTACT                                                  ]
[+] EMBL CD095685             [TACTGCTATGGTGGAATGCGTAAGAAGACCTGAAATCCAACCACCCTACCTACCTGATCTCACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCTGGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGTCCACTAATTCGTCTTTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTCGGGCTGATGATCCATCTGTGCGGGCTGTTCTAGGAATTCGTGGTTCCGTCGTTGCAGACGTGGCTCATATTCTCCTGGAATATGGTCACCAAGTTTTTGGCATACATTTCAAGTCGCTCTTTCAGCTTGCCCAACATCTTGTTGCTAACCGTTATGTTAATTCCAGGTCCAAACATGCTTTTGCTTTGATCGCTC                                                                                                                                                                                                                 ]
[-] EMBL CD146803             [                                                                                                                                       TGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGTCCACTAATTCGTCTTTTATAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGATGATCCATCTGTGCGGGCTGTTCTAGGAATTCGTGGTTCCGTCGTTGCAGACGTGGCTCATATTCTCCTGGAATATGGTCACCAAG TTTTGGCATACATTTCAAGTCGCTCTTTCAGCTTGCCCAACATCTTGTTGCTAACCGTTATGTTAATTCCAGGTCCAAACATGCTTTTGCTTTGATCGCTCATGCTGCTAATCCTCCGAGCTCCTTTTCACCACCACCCTCTACAGCCCTTGCTGAAATGCTTCAAAAAGGCTCTGTTAAATCAGCATTCGGTAAAATACAAAACAAACGTCAGAATTCGTC TACAAGTGATTTATCATCCTGTAAATCGGAATGTACTAAAAATGAAAGTTTTCATGCACCTTCAACAAACAATGTTGACTCCCCAGT]




>consensus_8361#0
TACTGCTATGGTGGAATGCGTAAGAAGACAGAAATCCAACCACCCTACCTACCTGATCTC
ACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCT
GGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGT
CCACTAATTCGTCTTTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGAT
GATCCATCTGTGCGGGCTGTTCTAGGAATTCGTGGTTCCGTCGTTGCAGACGTGGCTCAT
ATTCTCCTGGAATATGGTCACCAAGTTTTTGGCATACATTTCAAGTCGCTCTTTCAGCTT
GCCCAACATCTTGTTGCTAACCGTTATGTTAATTCCAGGTCCAAACATGCTTTTGCTTTG
ATCGCTCATGCTGCTAATCCTCCGAGCTCCTTTTCACCACCACCCTCTACAGCCCTTGCT
GAAATGCTTCANAAAGGCTCTGTTAAATCAGCATTCGGTAAAATACANAACANACGTCAG
AATTCGTCNTACAGTGATTTATCATCCTGTAAATCGGAATGTACTAAAAATGAAAGTTTT
CATGCACCTTCAACAAACAATGTTGACTCCCCAGT

consensusID : consensus_8361#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [TACTGCTATGGTGGAATGCGTAAGAAGACAGAAATCCAACCACCCTACCTACCTGATCTCACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCTGGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGTCCACTAATTCGTCTTTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGATGATCCATCTGTGCGGGCTGCTCCAGGAATTCGTGGTTCCGTCGCTGCACACGTGGCTTACATTCCCCTGGAATATGGTCCACAAGTTCCCTGGCATCACATTCAAGTCCGCTCTTTCACCTCGCCACCATAGCAGTATCCA]

[+] EMBL CD096108             [TACTGCTATGGTGGAATGCGTAAGAAGACAGAAATCCAACCACCCTACCTACCTGATCTCACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCTGGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGTCCACTAATTCGTCTTTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGATGATCCATCTGTGCGGGCTGCTCCAGGAATTCGTGGTTCCGTCGCTGCACACGTGGCTTACATTCCCCTGGAATATGGTCCACAAGTTCCCTGGCATCACATTCAAGTCCGCTCTTTCACCTCGCCACCATAGCAGTATCCA]




>consensus_8361#1
TACTGCTATGGTGGAATGCGTAAGAAGACAGAAATCCAACCACCCTACCTACCTGATCTC
ACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCT
GGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGT
CCACTAATTCGTCTTTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGAT
GATCCATCTGTGCGGGCTGCTCCAGGAATTCGTGGTTCCGTCGCTGCACACGTGGCTTAC
ATTCCCCTGGAATATGGTCCACAAGTTCCCTGGCATCACATTCAAGTCCGCTCTTTCACC
TCGCCACCATAGCAGTATCCA

consensusID : consensus_8361#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 306
fasta sequence

                              [TTCATTGGGTATTGGCCTCTTTTCACCAGGTGGACAGTCTTCTCTTCACTTATCCAACCAAGTGGAGCAAAGTCAAGCCTACACGTGGATTATGTCTCATCTAGAAGAAGATCCATCAACCTGCTTAAGAGAAGATGAAGTGTACGATGACTACAGAGCATATTGTGAGAAGCACCACATGAAAACTCTAAATACGGCAGATTTTGGAAAGGTCATGAAACGCGCATTTCCAAATGTAAAACCACGACGTTTGGGTCAACGAGGACAGTCTCGATACTGCTATGGTGGAATGCGTAAGAGGACAGA]

[+] EMBL CD161009             [TTCATTGGGTATTGGCCTCTTTTCACCAGGTGGACAGTCTTCTCTTCACTTATCCAACCAAGTGGAGCAAAGTCAAGCCTACACGTGGATTATGTCTCATCTAGAAGAAGATCCATCAACCTGCTTAAGAGAAGATGAAGTGTACGATGACTACAGAGCATATTGTGAGAAGCACCACATGAAAACTCTAAATACGGCAGATTTTGGAAAGGTCATGAAACGCGCATTTCCAAATGTAAAACCACGACGTTTGGGTCAACGAGGACAGTCTCGATACTGCTATGGTGGAATGCGTAAGAGGACAGA]




>consensus_8361#2
TTCATTGGGTATTGGCCTCTTTTCACCAGGTGGACAGTCTTCTCTTCACTTATCCAACCA
AGTGGAGCAAAGTCAAGCCTACACGTGGATTATGTCTCATCTAGAAGAAGATCCATCAAC
CTGCTTAAGAGAAGATGAAGTGTACGATGACTACAGAGCATATTGTGAGAAGCACCACAT
GAAAACTCTAAATACGGCAGATTTTGGAAAGGTCATGAAACGCGCATTTCCAAATGTAAA
ACCACGACGTTTGGGTCAACGAGGACAGTCTCGATACTGCTATGGTGGAATGCGTAAGAG
GACAGA

consensusID : consensus_8361#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 97
fasta sequence

                              [CCCTGGGCATGGGTGGNAAATCAGGAATGATAAATCACTTGTAGACGAATTCTGACGTTTGTTTTGTATTTTACCGAATGCTGATTTAACAGAGCCT]

[+] EMBL CD168264             [CCCTGGGCATGGGTGGNAAATCAGGAATGATAAATCACTTGTAGACGAATTCTGACGTTTGTTTTGTATTTTACCGAATGCTGATTTAACAGAGCCT]




>consensus_8361#3
CCCTGGGCATGGGTGGNAAATCAGGAATGATAAATCACTTGTAGACGAATTCTGACGTTT
GTTTTGTATTTTACCGAATGCTGATTTAACAGAGCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8361#0      TACTGCTATGGTGGAATGCGTAAGAAGACAGAAATCCAACCACCCTACCTACCTGATCTC 60
consensus_8361#1      TACTGCTATGGTGGAATGCGTAAGAAGACAGAAATCCAACCACCCTACCTACCTGATCTC 60
consensus_8361#3      ------------------------------------------------------------
consensus_8361#2      ------------------------------------------------------------
                                                                                  

consensus_8361#0      ACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCT 120
consensus_8361#1      ACCAATGAAGCTCTTGGTATTAACTCTCAAAATATATCTGGAAGATCTGTTGGTTCACCT 120
consensus_8361#3      ------------------------------------------------------------
consensus_8361#2      --------TTCATTGGGTATTGGCCTCTTTTCACCAGGTGGACAGTCT-TCTCTTCACTT 51
                                                                                  

consensus_8361#0      GGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGT 180
consensus_8361#1      GGAAGTAGTTCTGGTGGAAGCTTCGAAGCTGGATCTCAAAGACATATGTCATCAAACAGT 180
consensus_8361#3      -----------------------------------CCCTGGGCATGGGTGGNAAATCAGG 25
consensus_8361#2      ---ATCCAACCAAGTGGAGCAAAGTCAAGCCTACACGTGGATTATGTCTCATCTAGAAGA 108
                                                                 **   *     *  ** 

consensus_8361#0      CCACTAATTCGTCT-TTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGA 239
consensus_8361#1      CCACTAATTCGTCT-TTTAAAATCCAATGGATCTGATGCCGATACTAGCAGTTGGGCTGA 239
consensus_8361#3      --AATGATAAATCA-CTTGTAGACGAAT---TCTGACGTTTGT-TTTGTATTTTACCGAA 78
consensus_8361#2      AGATCCATCAACCTGCTTAAGAGAAGATGAAGTGTACGATGACTACAGAGCATATTGTGA 168
                        *   **    *   **        **       * *         *    *      *

consensus_8361#0      TGATCCATCTGTGCGGGCTGTTCTAGGAATTCGTGGTTCCGTCGTTGCAGACGTGGCTCA 299
consensus_8361#1      TGATCCATCTGTGCGGGCTGCTCCAGGAATTCGTGGTTCCGTCGCTGCACACGTGGCTTA 299
consensus_8361#3      TGCTGATTTAACAGAGCCT----------------------------------------- 97
consensus_8361#2      GAAGCACCACATGAAAACTCTAAATACGGCAGATTTTGGAAAGGTCATGAAACGCGCATT 228
                                       **                                         

consensus_8361#0      TATTCTCCTGGAATATGGTCACCAAGTTTT-TGGCAT-ACATTTCAAGTCGCTCTTTCAG 357
consensus_8361#1      CATTCCCCTGGAATATGGTCCACAAGTTCCCTGGCATCACATTCAAGTCCGCTCTTTCAC 359
consensus_8361#3      ------------------------------------------------------------
consensus_8361#2      TCCAAATGTAAAACCACGACGTTTGGGTCAACGAGGACAGTCTCGATACTGCTATGGTGG 288
                                                                                  

consensus_8361#0      CTTGCCCAACATCTTGTTGCTAACCGTTATGTTAATTCCAGGTCCAAACATGCTTTTGCT 417
consensus_8361#1      CTCGCC-ACCATAGCAGTATCCA------------------------------------- 381
consensus_8361#3      ------------------------------------------------------------
consensus_8361#2      AATGCGTAAGAGGACAGA------------------------------------------ 306
                                                                                  

consensus_8361#0      TTGATCGCTCATGCTGCTAATCCTCCGAGCTCCTTTTCACCACCACCCTCTACAGCCCTT 477
consensus_8361#1      ------------------------------------------------------------
consensus_8361#3      ------------------------------------------------------------
consensus_8361#2      ------------------------------------------------------------
                                                                                  

consensus_8361#0      GCTGAAATGCTTCANAAAGGCTCTGTTAAATCAGCATTCGGTAAAATACANAACANACGT 537
consensus_8361#1      ------------------------------------------------------------
consensus_8361#3      ------------------------------------------------------------
consensus_8361#2      ------------------------------------------------------------
                                                                                  

consensus_8361#0      CAGAATTCGTCNTACAGTGATTTATCATCCTGTAAATCGGAATGTACTAAAAATGAAAGT 597
consensus_8361#1      ------------------------------------------------------------
consensus_8361#3      ------------------------------------------------------------
consensus_8361#2      ------------------------------------------------------------
                                                                                  

consensus_8361#0      TTTCATGCACCTTCAACAAACAATGTTGACTCCCCAGT 635
consensus_8361#1      --------------------------------------
consensus_8361#3      --------------------------------------
consensus_8361#2      --------------------------------------