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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1081 fasta sequence
[GTCAAGTTTGAAACGCTATTCAGTGACTGGTGAAGATTTGGGAGGACGATTTTTAAAATTGCTACATTCTTCAAAGATATCTGAACAGAACAATGCATGTCTTCCAGTGGGAACACCATTAGTTTGCAATTATTTGCGAGTAGCTTTAGCAGCACTTCCAAGTGCTATTGCTGCACCTTTACTCCGTCAAGTGAGTCGTCCACATGAAGTATTAGCAT-GGGAAAAATTGATCAAAGATGCTATCACTTCAGCAACCAACCAAATTAGCAATTTAGCCCCAATAAGTACAGTTCATTTACGTCGTCATCAAACATACTCAGCACAGCACAATCGTAGACTAGTTAAACAAGTCACCATGGAAGCTGATCTTGACTCCCCAACATATATTCGTCAGTCGACTCCTTCGAATCGACCGTTTACCATGGT-CTCTATGTCACCTAGCCTCTATTATACACCGAATGATTCAATTGTGGATGAAACAAAGAAGGTTACAAACAGTTTATCATTATCACAGAAATCATTAACCTTTTCAAACGAAGCAATTCCTGAAGAACCAATGGAAATTATCCAGTGCGCACGGAAAATTGCTGGTGTTCATTCAAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCANAACACTAGATGAATTGGTAAATCACGAGAATTCTGCTAATGGTCTAGTAGACAATTCAATGTACAATATCCTCGGACATAAATCTTTGAAAACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAGACCGTGCCAAACTTCGTCGAAATCACATTGTTGATGAAGAAGACTTCTTAGATGCTATAACGAAAGAAGACTTGTGGAAGATGAGTNTAAGTGGTGGGACAGTGCTTCGCCTTTGGAGAACATACAGAANATCCGTTCAATGGAAATATGGTCTCATGAAAAATTCATGAATNNTGATCACATTCTTCTACAGAGCCTATATTTTTACTAGACATTTATCTCACACTTGATACCCCAACTGAANTGTGCCTTATTTANTATAGTATTTAAAACCGATGCTCAATTCAAAAGGTACT]
[+] EMBL CD079089 [GTCAAGTTTGAAACGCTATTCAGTGACTGGTGAAGATTTGGGAGGACGATTTTTAAAATTGCTACATTCTTCAAAGATATCTGAACAGAACAATGCATGTCTTCCAGTGGGAACACCATTAGTTTGCAATTATTTGCGAGTAGCTTTAGCAGCACTTCCAAGTGCTATTGCTGCACCTTTACTCCGTCAAGTGAGTCGTCCACATGAAGTATTAGCAT GGGAAAAATTGATCAAAGATGCTATCACTTCAGCAACCAACCAAATTAGCAATTTAGCCCCAATAAGTACAGTTCATTTACGTCGTCATCAAACATACTCAGCACAGCACAATCGTAGACTAGTTAAACAAGCCACCATGGAAGCTGATCTTGACTCCCCAACATATATTCGTCAGTCGACTCCTTCGAATCGACCGTTTACCATGGT CTCTATGTCACCTAGCCTCTATTATACACCGAATGATTCAATTGTGGATGAAACAAAGAAGGTTACAAACAGTTTATCATTATCACAGANATCATTAACCTTTTCANACGAAGCAATTCCTGAAGAACCAATGGAAATTATCCAGTGCGCACGGA ]
[+] EMBL CD078926 [ AGAACAATGCATGTCTTCCAGTGGGAACACCATTAGTTTGCAATTATTTGCGAGTAGCTTTAGCAGCACTTCCAAGTGCTATTGCTGCACCTTTACTCCGTCAAGTGAGTCGTCCACATGAAGTATTAGCAT GGGAAAAATTGATCAAAGATGCTATCACTTCAGCAACCAACCAAATTAGCAATTTAGCCCCAATAAGTACAGTTCATTTACGTCGTCATCAAACATACTCAGCACAGCACAATCGTAGACTAGTTAAACAAGTCACCATGGAAGCTGATCTTGACTCCCCAACATATATTCGTCAGTCGACTCCTTCGAATCGACCGTTTACCATGGT CTCTATGTCACCTAGCCTCTATTATACACCGAATGATTCAATTGTGGATGAAACAAAGAAGGTTACAAACAGTTTATCATTATCACAGAAATCATTAACCTTTTCAAACGAAGCAATTCCTGAAGAACCAATGGAAATTATCCAGTGCGCACTGAAAATTGCTGGTGTTCATTCAAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCANAACACTAGATGAATTGGTAAATCACGAGAATTCTGCTAATGGTCTAGTAGACAATTCA ]
[+] EMBL CD078917 [ AGAACAATGCATGTCTTCCAGTGGGAACACCATTAGTTTGCAATTATTTGCGAGTAGCTTTAGCAGCACTTCCAAGTGCTATTGCTGCACCTTTACTCCGTCAAGTGAGTCGTCCACATGAAGTATTAGCAT GGGAAAAATTGATCAAAGATGCTATCACTTCAGCAACCAACCAAATTAGCAATTTAGCCCCAATAAGTACAGTTCATTTACGTCGTCATCAAACATACTCAGCACAGCACAATCGTAGACTAGTTAAACAAGTCACCATGGAAGCTGATCTTGACTCCCCAACATATATTCGTCAGTCGACTCCTTCGAATCGACCGTTTACCATGGT CTCTATGTCACCTAGCCTCTATTATACACCGAATGATTCAATTGTGGATGAAACAAAGAAGGTTACAAACAGTTTATCATTATCACAGAAATCATTAACCTTTTCAAACGAAGCAATTCCTGAAGAACCAATGGAAATTATCCAGTGCGCACTGAAAATTGCTGGTGTTCATTCAAGTGCTCCTTTGTGTAATGGTAAATCAAGGACTAGCANAACA ]
[+] EMBL CD080221 [ GAAGTATTAACATGGGGAAAAATGGATCAAAGATGCTATCACTTCAGCAACCAACCAAATTAGCAGTTTAGCCCCAATAAGTACAGGTCATTTACGTCGTCATCAGACGTACTCAGCACAGCACAATCGTAGACTAGTTAAACAGGTCACCATGGAAGCTGATCTTGACTCCCCAACATATATGCGTCAGTCGACTCCTTCGAATCGACCGTTTACCATGGTACTGTATGTCACCTAGCCTCTATTATACACCGAATGATTCAATTGTGGATGAAACAAAGAAGGTTACAAACAGTTTATCATTATCACAGAAATCATTAACCTTTTCAAACGAAGCAATTCCTGAAGAACCAATGGAAATTATCCAGTGCGCACGGAAAATTGCTGGTGTTCATTCAAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCAAAACACTAGATGAATTGGTAAATCACGAGAATTCTGCTAATGGTCTAGTAGACAATTCAATGTACAATATCCTCGGACATAAATCTTTGAAAACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAGACCGTGCCAAACTTCGTCGAAATCACATTGTTGATGAAGAAGACTTCTTAGATGCTATAACGAAAGAAGACTTGTGGAAGATGAGTNTAAGTGGTGGGACAGTGCTTCGCCTTTGGAGAACATACAGAANATCCGTTCAATGGAAATATGGTCTCATGAAAAATTCATGAATNNTGATCACATTCTTCTACAGAGCCTATATTTTTACTAGACATTTATCTCACACTTGATACCCCAACTGAANTGTGCCTTATTTANTATAGTATTTAAAACCGATGCTCAATTCAAAAGGTACT]
consensusID : consensus_8530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 518 fasta sequence
[TGAAAATTGCTGGTGTTCATTCAAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCAAAACACTAGATGAATTGGTAAATCACGAGAATTCTGGTAATGGTTTAGTAGACAATTCAATGTACAATATCCTCGGACATAAATCTTTGAATACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAGACCGTGCCAAACTTTGTTGAAATCACATTGTTGATGAAGAAGACTTTTTAGATGCTATAACGAAAGAAGACTTGTGGAAGATGAGTTTAAGTGGTGGAACAGTGCTTCGCCTTTGGAGAAACATACAGAAAATCCGTTCAATGGAATAATGTTTTCATGAAAAATTTCATGAATTTTGATCACAATTTTTTTACAGAGCCTATATTTTTACTAAGACATTTTATTTCACACCTTGATACCCAAACCTGAAATGTGCCTTTATTTTATAATAGTATTTTAAAACCCAGAATGCTCAAATATCAAAAAAGTTA]
[-] EMBL CD073374 [TGAAAATTGCTGGTGTTCATTCAAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCAAAACACTAGATGAATTGGTAAATCACGAGAATTCTGGTAATGGTTTAGTAGACAATTCAATGTACAATATCCTCGGACATAAATCTTTGAATACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAGACCGTGCCAAACTTTGTTGAAATCACATTGTTGATGAAGAAGACTTTTTAGATGCTATAACGAAAGAAGACTTGTGGAAGATGAGTTTAAGTGGTGGAACAGTGCTTCGCCTTTGGAGAAACATACAGAAAATCCGTTCAATGGAATAATGTTTTCATGAAAAATTTCATGAATTTTGATCACAATTTTTTTACAGAGCCTATATTTTTACTAAGACATTTTATTTCACACCTTGATACCCAAACCTGAAATGTGCCTTTATTTTATAATAGTATTTTAAAACCCAGAATGCTCAAATATCAAAAAAGTTA]
[-] EMBL CD073383 [ AATTGCTGGTGTTCATTCAAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCAAAACACTAGATGAATTGGTAAATCACGAGAATTTTGCTAATGGTTTAGTAGACAATTCAATGTACAATATCCTCGGACATAAATCTTTGAATACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAGACCGTGCCAAACTTTGTCGAAATCACATTGTTGATGAAGAAGACTTTTTAGATGCTATAACGAAAGAAGACTTGTGGAAGATGAGTTTAAGTGGTGGAACAGTGCTTTGCCTTTGGAGAAACATACAGAAAATCCGTTCAATGGAATAATGTTTTCATGAAAAATTTCATGAATTTTGATCACAATTTTTTTACAGAGCCTATATTTTTACTAAGACATTTTATTTCACACCTTGATACCCAAACCTGAAATGTGCCTTTATTTTATAATAGTATTTTAAAACCCAGAATGGTCAAATATCAAAAAAGTTA]
consensusID : consensus_8530#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence
[TTCAATGTACAATATCCTCGGACATAAATCTTTGAAAACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAGACCGTGCCAAAGTTAGTAACGTATTGATACATAACCTAGTCCAATTCACATTTTCCCTTGAAGATATGAATTTGATGCTTTTATGATAGCACAGACTTTTGATGAGTATTCCCCAATTTTTTTAATATGGAAATGTTTTATTTGTCCACAGAAATAAACAAACATCCATGGGATGACTGGGTACAACGCCGTTTGCATTCCAGTTTAACTTTATTTGAAAAATGACAGAAATGTTTGGTATTTTGAATCAATCATTTTGAAGTTTTCGATTGAAAAAGTTTTTGTAGATGAACATGACAAATGAAGGATTTGGTAAGAGCCTTTACAGGAAATGTAGGAATTTGCGGAGCGTTTTATGCATATGAAATGAAATTTTTGTAAACACAAAAACCTGGTTTATGAATATAAAGCG]
[-] EMBL CD073543 [TTCAATGTACAATATCCTCGGACATAAATCTTTGAAAACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAGACCGTGCCAAAGTTAGTAACGTATTGATACATAACCTAGTCCAATTCACATTTTCCCTTGAAGATATGAATTTGATGCTTTTATGATAGCACAGACTTTTGATGAGTATTCCCCAATTTTTTTAATATGGAAATGTTTTATTTGTCCACAGAAATAAACAAACATCCATGGGATGACTGGGTACAACGCCGTTTGCATTCCAGTTTAACTTTATTTGAAAAATGACAGAAATGTTTGGTATTTTGAATCAATCATTTTGAAGTTTTCGATTGAAAAAGTTTTTGTAGATGAACATGACAAATGAAGGATTTGGTAAGAGCCTTTACAGGAAATGTAGGAATTTGCGGAGCGTTTTATGCATATGAAATGAAATTTTTGTAAACACAAAAACCTGGTTTATGAATATAAAGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8530#0 GTCAAGTTTGAAACGCTATTCAGTGACTGGTGAAGATTTGGGAGGACGATTTTTAAAATT 60
consensus_8530#1 ------------------------------------------------------------
consensus_8530#2 ------------------------------------------------------------
consensus_8530#0 GCTACATTCTTCAAAGATATCTGAACAGAACAATGCATGTCTTCCAGTGGGAACACCATT 120
consensus_8530#1 ------------------------------------------------------------
consensus_8530#2 ------------------------------------------------------------
consensus_8530#0 AGTTTGCAATTATTTGCGAGTAGCTTTAGCAGCACTTCCAAGTGCTATTGCTGCACCTTT 180
consensus_8530#1 ------------------------------------------------------------
consensus_8530#2 ------------------------------------------------------------
consensus_8530#0 ACTCCGTCAAGTGAGTCGTCCACATGAAGTATTAGCATGGGAAAAATTGATCAAAGATGC 240
consensus_8530#1 ------------------------------------------------------------
consensus_8530#2 ------------------------------------------------------------
consensus_8530#0 TATCACTTCAGCAACCAACCAAATTAGCAATTTAGCCCCAATAAGTACAGTTCATTTACG 300
consensus_8530#1 ------------------------------------------------------------
consensus_8530#2 ------------------------------------------------------------
consensus_8530#0 TCGTCATCAAACATACTCAGCACAGCACAATCGTAGACTAGTTAAACAAGTCACCATGGA 360
consensus_8530#1 ------------------------------------------------------------
consensus_8530#2 ------------------------------------------------------------
consensus_8530#0 AGCTGATCTTGACTCCCCAACATATATTCGTCAGTCGACTCCTTCGAATCGACCGTTTAC 420
consensus_8530#1 ------------------------------------------------------------
consensus_8530#2 ------------------------------------------------------------
consensus_8530#0 CATGGTCTCTATGTCACCTAGCCTCTATTATACACCGAATGATTCAATTGTGGATGAAAC 480
consensus_8530#1 ------------------------------------------------------------
consensus_8530#2 ------------------------------------------------------------
consensus_8530#0 AAAGAAGGTTACAAACAGTTTATCATTATCACAGAAATCATTAACCTTTTCAAACGAAGC 540
consensus_8530#1 ------------------------------------------------------------
consensus_8530#2 ------------------------------------------------------------
consensus_8530#0 AATTCCTGAAGAACCAATGGAAATTATCCAGTGCGCACGGAAAATTGCTGGTGTTCATTC 600
consensus_8530#1 --------------------------------------TGAAAATTGCTGGTGTTCATTC 22
consensus_8530#2 --------------------------TTCAATGTACAAT-ATCCTCGGACATAAATCTTT 33
* * * * **
consensus_8530#0 AAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCANAACACTAGATGAATTG-GTAA 659
consensus_8530#1 AAGTGCTCCTTTGTGTAATGTTAAATCAAGGACTAGCAAAACACTAGATGAATTG-GTAA 81
consensus_8530#2 GAAAACTGGATTCAGTA-CACTAGACGATTGGTTTAAAGACCTCCGGATACCCGATGAAG 92
* ** ** *** ** * * * * * * * * *** * *
consensus_8530#0 ATCACGAGAATTCTGCTAATGGTCTAGTAGACAA-----TTCAATGTACAATATCC-TCG 713
consensus_8530#1 ATCACGAGAATTCTGGTAATGGTTTAGTAGACAA-----TTCAATGTACAATATCC-TCG 135
consensus_8530#2 ACCGTGCCAAAGTTAGTAACGTATTGATACATAACCTAGTCCAATTCACATTTTCCCTTG 152
* * * ** * *** * * ** * ** * **** *** * *** * *
consensus_8530#0 GACATAAATCTTTGAAAACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGA 773
consensus_8530#1 GACATAAATCTTTGAATACTGGATTCAGTACACTAGACGATTGGTTTAAAGACCTCCGGA 195
consensus_8530#2 AAGATATGAATTTGATGCTTTTAT--GATAGCACAGACTTTTGATGAGTATTCCCCAATT 210
* *** ***** * ** ** **** *** * * ** *
consensus_8530#0 TACCCGATGAAGAC-CGTGCCAAACTTCGTCGAAATCACATTGTTGATGAAGAAGACTTC 832
consensus_8530#1 TACCCGATGAAGAC-CGTGCCAAACTTTGTTGAAATCACATTGTTGATGAAGAAGACTTT 254
consensus_8530#2 TTTTTAATATGGAAATGTTTTATTTGTCCACAGAAATAAACAAACATCCATG--GGATGA 268
* ** ** ** * * ** * * * * * *
consensus_8530#0 TTAGATGCTATAACGAAAGAAGACTTGTGGAAGATGAGTNTAAGTGGTGGGACAGTGCTT 892
consensus_8530#1 TTAGATGCTATAACGAAAGAAGACTTGTGGAAGATGAGTTTAAGTGGTGGAACAGTGCTT 314
consensus_8530#2 CTGGGTACAACGCCGTTTGCATTCCAGTTTAACTTTATTTGAAAAATGACAGAAATGTTT 328
* * * * * ** * * * ** ** * * * ** * ** **
consensus_8530#0 CGCCTTTGGAG--AA-CATACAGAANATCCGTTCAATGGAAATATGGTCTCATGAAAAAT 949
consensus_8530#1 CGCCTTTGGAG--AAACATACAGAAAATCCGTTCAATGGAATAATGTTTTCATGAAAAAT 372
consensus_8530#2 GGTATTTTGAATCAATCATTTTGAAGTT---TTCGATTGAAAAA-GTTTTTGTAGATGAA 384
* *** ** ** *** *** * *** ** *** * * * * * * *
consensus_8530#0 T-CATGAATNNTGATCACA-TTCTTCTACAGAGCCTATATTTTTACTA-GACATTT-ATC 1005
consensus_8530#1 TTCATGAATTTTGATCACAATTTTTTTACAGAGCCTATATTTTTACTAAGACATTTTATT 432
consensus_8530#2 --CATGA---CAAATGAAGGATTTGGTA-AGAGCCTTTACAGGAAATGTAGGAATTTGCG 438
***** ** * * * ** ******* ** * * * **
consensus_8530#0 TCACAC-TTGATACCCCAAC-TGAANTGTGCCTTA--TTTANTATAGTATTT-AAAACC- 1059
consensus_8530#1 TCACACCTTGATACCCAAACCTGAAATGTGCCTTTATTTTATAATAGTATTTTAAAACCC 492
consensus_8530#2 GAGCGT-TTTATGC----ATATGAAATGAAATTTT----TGTAAACACA----AAAACCT 485
* ** ** * * **** ** ** * * * ******
consensus_8530#0 --GATGCTCAATTCAAAAGGTACT-- 1081
consensus_8530#1 AGAATGCTCAAATATCAAAAAAGTTA 518
consensus_8530#2 --GGTTTATGAATATAAAGCG----- 504
* * * **
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||