|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8537#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 591 fasta sequence
[AACAAACATCGAAATGGCTTTAGTTAGAATAATAATCTTGAATGAGAGAAGATAGCAGACAATTATACTTTTCTAAAAATACCCCAATAAAATAAAATCAATAATTAATTTACCGATTGTTTCAGCATCCGTTTCAACTGCTGAATCAGATCCACGAGCTAATATCTGGTATATTGCAGAAATTTCTAGTACCATAATATCTGGTTTAAAACCATAAGCAGCTTTATCACGTACATTTAGATCACGTTGTTTTGGTCCTACAAGTCTTGTCAAGAAATAATTTAGCATACAAGCCACTCGATCAACCAATATTGGATGTGTAATTAATTGTGAGCATAAAGTGATCACTCGACGTAATGTAGCAATAGTGTCTAATCCAAGCATAATATGATGTCGTGCTAAACGACCTGTATGTGCAAACAATGCTTCGTCTGAAGAAGATGATAATCTAATATAACAAGAAAATGATGATAAAGTATAAATATACAAACACACTGCACTTATCATAGATTGGTCTTAATTAGAGTATAACTGAAAGCCAAGGACCATCGGAATGTTTCGTTCTAGTATATGACTCTTCAACAGCTCATA]
[+] EMBL CD111490 [AACAAACATCGAAATGGCTTTAGTTAGAATAATAATCTTGAATGAGAGAAGATAGCAGACAATTATACTTTTCTAAAAATACCCCAATAAAATAAAATCAATAATTAATTTACCGATTGTTTCAGCATCCGTTTCAACTGCTGAATCAGATCCACGAGCTAATATCTGGTATATTGCAGAAATTTCTAGTACCATAATATCTGGTTTAAAACCATAAGCAGCTTTATCACGTACATTTAGATCACGTTGTTTTGGTCCTACAAGTCTTGTCAAGAAATAATTTAGCATACAAGCCACTCGATCAACCAATATTGGATGTGTAATTAATTGTGAGCATAAAGTGATCACTCGACGTAATGTAGCAATAGTGTCTAATCCAAGCATAATATGATGTCGTGCTAAACGACCTGTATG ]
[-] EMBL CD111184 [ CAGCATCCGTTTCAACTGCTGAATCAGATCCACGAGCTAATATCTGGTATATTGCAGAAATTTCTAGTACCATAATATCTGGTTTAAAACCATAAGCAGCTTTGTCACGTACATTTAGATCACGTTGTTTTGGTCCTACAAGTCTTGTCAAGAAATAATTTAGCATACAAGCCACTCGATCAACCAATATTGGATGTGTAATTAATTGTGAACATAAAGTGATCACTCGACGTAATGTAGCAATAGTGTCTAATCCAAGCATAATATGATGTCGTGCTAAACGACCTGTATGTGCAAACAATGCTTCGTCTGAAGAAGATGATAATCTAATATAACAAGAAAATGATGATAAAGTATAAATATACAAACACACTGCACTTATCATAGATTGGTCTTAATTAGAGTATAACTGAAAGCCAAGGACCATCGGAATGTTTCGTTCTAGTATATGACTCTTCAACAGCTCATA]
consensusID : consensus_8537#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[AATTTGTTCAAGGTATATGAAAGTAATTAGTAATGGATTGTAATTTCCTCTATTGAAGAGCATTGTTTTAAAGTAAATACAAACCAGGTATTTATTTTTGGGTTAAAGCAAGCTTTTATAGATTAAAATATAAACTCAAATGAGGGAGAAGACGAAAAATGATGAAAAATATCAACACAGAAAACTATAAGAAAAGAAAAAATACTAACCTCAAGAAATTCGTCTTTGCCACGTCTTAAATAACTAACAAGTTCCACAACATTATCAACCAAATATTCTGGTAAATCAGAAAGACAACCATGAGAAAATGGTGTTGAGTCAGAGGTAGAAGTAGTAATATTACTACTATCACTACTATTTTTATTTAGTATATCATTAGCCAATTTGACAAGTAAACGACAAGTGGTCACAGCAAATGACAATTGATCTTTTAATCGAGACATACACGACAAACTGGTAGATTGTTCTAAATACCGTGCAGTGCGTTCACGCATAAAACGACGTANAAAAATTACTTGNGAATCATTAGAATTATCCGATTCGTGTGGTTGCAATTGATCTTCTAACCG]
[+] EMBL CD116148 [AATTTGTTCAAGGTATATGAAAGTAATTAGTAATGGATTGTAATTTCCTCTATTGAAGAGCATTGTTTTAAAGTAAATACAAACCAGGTATTTATTTTTGGGTTAAAGCAAGCTTTTATAGATTAAAATATAAACTCAAATGAGGGAGAAGACGAAAAATGATGAAAAATATCAACACAGAAAACTATAAGAAAAGAAAAAATACTAACCTCAAGAAATTCGTCTTTGCCACGTCTTAAATAACTAACAAGTTCCACAACATTATCAACCAAATATTCTGGTAAATCAGAAAGACAACCATGAGAAAATGGTGTTGAGTCAGAGGTAGAAGTAGTAATATTACTACTATCACTACTATTTTTATTTAGTATATCATTAGCCAATTTGACAAGTAAACGACAAGTGGTCACAGCAAATGACAATTGATCTTTTAATCGAGACATACACGACAAACTGGTAGATTGTTCTAAATACCGTGCAGTGCGTTCACGCATAAAACGACGTANAAAAATTACTTGNGAATCATTAGAATTATCCGATTCGTGTGGTTGCAATTGATCTTCTAACCG]
consensusID : consensus_8537#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[TCGGCACGAGGGGTAGTGCAGCTGATGCAGCGATAGCTGCTTCTTCATCATCTACATCTACAAAATTCTTCATCACATCAACCTGGTTCCCACTTAAACAGTAGTGATAGTCAAACAGATATTGGTAATAATAGTAGTAGTACTAGTAGTAGTAACAATGGTGGCAACTCTGCAACGGACACTCAAACTGCTGCTGTTGGATTTGAAGAAAAATTTCATTATCGACGTCCAATGTATGCTTGTTTAAGATATTGGTACGGTAAACCATTATATGATGTACAGTTTAAGCGTTTAGAAAATGAAGCTTTAGCGCATATCGATGATGTGAATCCTCCGTTATTTCTACAATTTTTATCACTTTTGGTGAATGATGCTATCTTTTTGTTAGATGAAGCCCTTAGTTTATTAGCCCAACTTAAACAAACTGAACGTGAAAGAGATAAATGTGGTGGGAGATTATCATCTTCTTCAGACGAAGCATTGTTTGCACATACAGGTCGTCTAGCACGACATC]
[+] EMBL CD083808 [TCGGCACGAGGGGTAGTGCAGCTGATGCAGCGATAGCTGCTTCTTCATCATCTACATCTACAAAATTCTTCATCACATCAACCTGGTTCCCACTTAAACAGTAGTGATAGTCAAACAGATATTGGTAATAATAGTAGTAGTACTAGTAGTAGTAACAATGGTGGCAACTCTGCAACGGACACTCAAACTGCTGCTGTTGGATTTGAAGAAAAATTTCATTATCGACGTCCAATGTATGCTTGTTTAAGATATTGGTACGGTAAACCATTATATGATGTACAGTTTAAGCGTTTAGAAAATGAAGCTTTAGCGCATATCGATGATGTGAATCCTCCGTTATTTCTACAATTTTTATCACTTTTGGTGAATGATGCTATCTTTTTGTTAGATGAAGCCCTTAGTTTATTAGCCCAACTTAAACAAACTGAACGTGAAAGAGATAAATGTGGTGGGAGATTATCATCTTCTTCAGACGAAGCATTGTTTGCACATACAGGTCGTCTAGCACGACATC]
consensusID : consensus_8537#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 457 fasta sequence
[TGAAGAATTTTGTGATGTAGATGATGAAGAAGCAGCTATCGCTGCATCAGCTGCACTACCAGCACTACCAACAACTCCAGTACCAGGTGATAATTCTATAGAGACAAATGCTGTAAGCAATGCTCTGACAGCATTACTCAATATAGGATCATTTGTGATTTCTGGATCTCGATTCATAAGTTGTTCACGTCTATGGAAAGACAAATTCAATGGATTCAATAAACCAGAATCACTAGTATTTGTATTCCAAGCTTCATCATCACGTTGTGGTACCAATGATTCAAGAACTTCAGCAAGACGAGCTCTTAAGTGTGGATTAGTTAATAATCCTGTATGACTCATAAATATTATGCTGAATTCTAACAATGGTTCCAATGGAATTGACGACACTTCAACAGACTCAAGAAATTCGTCTTTGCCACGTCTTAAATAACTAACAAGTTCCACAACATTATCA]
[+] EMBL CD111469 [TGAAGAATTTTGTGATGTAGATGATGAAGAAGCAGCTATCGCTGCATCAGCTGCACTACCAGCACTACCAACAACTCCAGTACCAGGTGATAATTCTATAGAGACAAATGCTGTAAGCAATGCTCTGACAGCATTACTCAATATAGGATCATTTGTGATTTCTGGATCTCGATTCATAAGTTGTTCACGTCTATGGAAAGACAAATTCAATGGATTCAATAAACCAGAATCACTAGTATTTGTATTCCAAGCTTCATCATCACGTTGTGGTACCAATGATTCAAGAACTTCAGCAAGACGAGCTCTTAAGTGTGGATTAGT ]
[+] EMBL CD180732 [ CTATAGAGACAAATGCTGTAAGCAATGCTCTGACAGCATTACTCAATATAGGATCATTTGTGATTTCTGGATCTCGATTCATAAGTTGTTCACGTCTATGGAAAGACAAATTCAATGAATTCAATAAACCAGAACCACTAGTATTTGTATTCCAAGCTTCATCATCACGTTGTGGTACCAATGATTCAAGAACTTCAGCAAGACGAGCTCTTAAGTGTGGATTAGTTAATAATCCTGTATGACTCATAAATATTATGCTGAATTCTAACAATGGTTCCAATGGAATTGACGACACTTCAACAGACTCAAGAAATTCGTCTTTGCCACGTCTTAAATAACTAACAAGTTCCACAACATTATCA]
consensusID : consensus_8537#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 305 fasta sequence
[TGTGGCCGGCCCGGGCTGGCGGATTGATTTGTAGTAGTAGTAGTAGTACTAGTAGTAGTAACAATGGTGGCAACTCTGCAACGGACACTCAAACTGCTGCTGTTGGTTTTTAAAAAAAATTTCATTATCGACGTCCAATGTATGCTTGTTTAAAATATTGGTACGGTAAACCATTATATGATGTACAGTTTAAGCGTTTAGAAAATGAAGCTTTAGCGCATATCGATGATGTGAATCCTCCGTTATTTCTACAATTTTTATCACTTTTGGTGAATGATGCTATCTTTTTGTTAGATGAAGCCCTT]
[+] EMBL CD200908 [TGTGGCCGGCCCGGGCTGGCGGATTGATTTGTAGTAGTAGTAGTAGTACTAGTAGTAGTAACAATGGTGGCAACTCTGCAACGGACACTCAAACTGCTGCTGTTGGTTTTTAAAAAAAATTTCATTATCGACGTCCAATGTATGCTTGTTTAAAATATTGGTACGGTAAACCATTATATGATGTACAGTTTAAGCGTTTAGAAAATGAAGCTTTAGCGCATATCGATGATGTGAATCCTCCGTTATTTCTACAATTTTTATCACTTTTGGTGAATGATGCTATCTTTTTGTTAGATGAAGCCCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8537#2 ----------------------------------------------------TCGGCACG 8
consensus_8537#4 ------------------------------------------------------------
consensus_8537#3 -----------------------------------------------------TGAAGAA 7
consensus_8537#1 -------------------------AATTTGTTCAAGGTATATGAAAGTAATTAGTAATG 35
consensus_8537#0 AACAAACATCGAAATGGCTTTAGTTAGAATAATAATCTTGAATGAGAGAAGATAGCAGAC 60
consensus_8537#2 AGGGGTAGTGCAGCTGATGCAGCGATAGCTGCTTCTTCATCATCTACATCTACAAAATTC 68
consensus_8537#4 ------------------------------------------------------------
consensus_8537#3 TTTTGTGATGTAGATGATGAAGAAGCAGCTATCGCTGCATCAGCTGCACTACCAGCACTA 67
consensus_8537#1 GATTGTAATTTCCTCTATTGAAGAGCA--TTGTTTTAAAGTAAATACAAACCAGGTATTT 93
consensus_8537#0 AATTATACTTT--TCTAAAAATACCCCAATAAAATAAAATCAATAATTAATTTACCGATT 118
consensus_8537#2 TTCATCACATCAACCTGGTTCCCACTTAAACAGTAGTGATAGTCAAACA------GATAT 122
consensus_8537#4 ------------------------TGTGGCCGGCCCGGGCTGGCGGATT------GATTT 30
consensus_8537#3 C------CAACAACTCCAGTACCAGGTGATAATTCTATAGAGACAAAT-------GCTGT 114
consensus_8537#1 ATTTTTGGGTTAAAGCAAGCTTTTATAGATTAAAATATAAACTCAAATGAGGGAGAAGAC 153
consensus_8537#0 GTTTCAGCATCCGTTTCAACTGCTG-AATCAGATCCACGAGCTAATATCTGGTATATTGC 177
*
consensus_8537#2 TGGTAATAAT----AGTAGTAGTACTAGTAGTAGTAACAATGGTGGCAACTCTG-CAACG 177
consensus_8537#4 --GTAGTAGT----AGTAGTAGTACTAGTAGTAGTAACAATGGTGGCAACTCTG-CAACG 83
consensus_8537#3 AAGCAATGCTCT--GACAGCATTACTCAATATAGGATCATTTGTGAT--TTCTG-GATCT 169
consensus_8537#1 GAAAAATGATGAAAAATATCAACACAGAAAACTATAAGAAAAGAAAAAATACTAACCTCA 213
consensus_8537#0 AGAAATTTCTAG--TACCATAATATCTGGTTTAAAACCATAAGCAGCTTTATCACGTACA 235
* * * * * * * * *
consensus_8537#2 -GACACTCAAACTGCTGCTGTTGGATTTGAAGAAAAATTTCATTATCGACGTCCAATGTA 236
consensus_8537#4 -GACACTCAAACTGCTGCTGTTGGTTTTTAAAAAAAATTTCATTATCGACGTCCAATGTA 142
consensus_8537#3 CGATTCATAAGTTGTTCACGTC--TATGGAAAGACAAATTCA--ATGGA--TTCAATAAA 223
consensus_8537#1 AGAAATTCGTCTTTGCCACGTCTTAAATAACTAACAAGTTCCACAACATTATCAACCAAA 273
consensus_8537#0 TTTAGATCACGTTGTTTTGGTCCTACAAGTCTTGTCAAGAAATAATTTA--GCATACAAG 293
* ** * *
consensus_8537#2 T------GCTTGTTTAAGATATTGGTACGGTAAACCA-TTATATGATGT-ACAGTTTAA- 287
consensus_8537#4 T------GCTTGTTTAAAATATTGGTACGGTAAACCA-TTATATGATGT-ACAGTTTAA- 193
consensus_8537#3 C------CAGAATCACTAGTATTTGTATTCCAAGCTT-CATCATCACGTTGTGGTACCA- 275
consensus_8537#1 TATTCTGGTAAATCAGAAAGACAACCATGAGAAAATG-GTGT-TGAGTCAGAGGTAGAA- 330
consensus_8537#0 CCACTCGATCAACCAATATTGGATGTGTAATTAATTGTGAGCATAAAGTGATCACTCGAC 353
* * * *
consensus_8537#2 GCGTTTAGAAAATGAAGCTTTAGCGCATATCGATGATGTGAATCCTCCGTTATTTC-TAC 346
consensus_8537#4 GCGTTTAGAAAATGAAGCTTTAGCGCATATCGATGATGTGAATCCTCCGTTATTTC-TAC 252
consensus_8537#3 ATGATTCAAGAACTTCAGCAAGACG-AGCTCTTAAGTGTGGATTAGTTAATAATCC-TGT 333
consensus_8537#1 GTAGTAATATTACTACTATCACTACTATTTTTATTTAGTATATCATTAGCCAATTT-GAC 389
consensus_8537#0 GTAATGTAGCAATAGTGTCTAATCCAAGCATAATATGATGTCGTGCTAAACGACCTGTAT 413
* * * *
consensus_8537#2 AAT--TTTTATCACTTTTG-GTGAATGATGCTATCTTTTTGTTAGATGAA---GCCCTTA 400
consensus_8537#4 AAT--TTTTATCACTTTTG-GTGAATGATGCTATCTTTTTGTTAGATGAA---GCCCTT- 305
consensus_8537#3 ATG--ACTCATAAATATTA--TGCTGAATTCTAACAATGGTTCCAATGGA---ATTGACG 386
consensus_8537#1 AAGTAAACGACAAGTGGTC-ACAGCAAATGACAATTGATCTTTTAATCGAGACATACACG 448
consensus_8537#0 GTGCAAACAATGCTTCGTCTGAAGAAGATGATAATCTAATATAACAAGAA---AATGATG 470
* * * ** * * * *
consensus_8537#2 GTTTATTAGCCCAAC---TTAAACAAACTGAACGTG---AAA--GAGATAAATGTGGTGG 452
consensus_8537#4 ------------------------------------------------------------
consensus_8537#3 ACACTTCAACAGACT---CAAGAAATTCGTCTTTGC---CAC--GTCTTAAATAACTAAC 438
consensus_8537#1 ACAAACTGGTAGATTGTTCTAAATACCGTGCAGTGCGTTCAC--GCATAAAACGACGTAN 506
consensus_8537#0 ATAAAGTA-TAAATATACAAACACACTGCACTTATCATAGATTGGTCTTAATTAGAGTAT 529
consensus_8537#2 GAGATTATCATCTTCTTCAGACGAAGCATTGTTTGCACATACAGGTCGTCTAGCACGACA 512
consensus_8537#4 ------------------------------------------------------------
consensus_8537#3 AAGTTCCACAACATTATCA----------------------------------------- 457
consensus_8537#1 AAAAATTACTTGNGAATCATTAGAATTATCCGATTCGTGTGGTTGCAATTGATCTTCTAA 566
consensus_8537#0 AACTGAAAGCCAAGGACCATCGGAATGTTTCGTTCTAGTATATGACTCTTCAACAGCTCA 589
consensus_8537#2 TC- 514
consensus_8537#4 ---
consensus_8537#3 ---
consensus_8537#1 CCG 569
consensus_8537#0 TA- 591
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||