cluster # 8539

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Schistosoma mansoni
cluster # 8539 cluster # 8539 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8539#0 length = 1108 sequences # 4

consensus_8539#1 length = 506 sequences # 1
consensus_8539#2 length = 291 sequences # 2

consensusID : consensus_8539#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1108
fasta sequence

                              [CCAGCCAANAATTTGGCACGAGGTGCTTCGATAAAAAAGTCTTTGCTTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGCCGAGATTTTTGAGCAAGCATCCGTGGCGTTCGGTCGTTTGGCTCAGCTTACCTTAGATCTTAAGCAGTTCCAAGCGCAACAAAATGATGGGGATTCCAAGACCTGTGGGAAGTGGTCACAAAAGGAAGTTGAAGATCTCAAAGATGCTATCGGACGTTTCGGATCTGATCTGTCGAAGGTAGCTGAGGCTATCGAAACAAAGACCATTAACCAGATAAAACAAAAGCTAAAAACCCGGGCTTTCCAGGATGCTGGTCTTGGAGATATTTCCCTTGAAAACGAGGCTGTGGATACAGAAACCAAA-CCAAAAGCCACCACTCCAAATGCTACCCCAGTAGAACGTGGAAGACGTAAGCAAGCTTTGAATCAAATGTCTGAACCAGTAGACATGCATCCTCCTAAAAGATCCAGATCTAATGTCGACGATTTGAATGAATATACAAATTATGCATCTGAAGTAGAAGTTCAAGATAAAAAATCCAACCAACCGGCTAGTAACAATAAATCATATA-TAATGAAAATGTTACACCTCAAAAGAACGATGACGGTCACAATATTTTAAAACAGAAACCAGTTGGCAGTACACTATCTAGTGTTTTATCCAAACCGATATCACTTGCTAGATCAGATGTAAGCAATTTTGATGATCGTCATCGCAAAACAACAACACCAGTAAATGTTATAGGTTCTGGATATAGTGCGAATGAATCAAAGTATGAAGATTATGACAGCGATGACAGCGATTATGATGGTGCTGATGGTGGAGGTGGTCGTACACCTGGAGAAGATTATGAATCAGACGAAGAACAAGAGGAAGAGGAAGAAGAAGAAGAGGAAGCCGACGACAATGAGGATTACGATGAATAAACAGCAACAAATTGAATTATTAAATATTTGTGTATATGTCTTCATGATTGTTATTATTATTCATTATCATGTAAATTAGTGTTTATACTGATAAAATAAGTTAACGATATTAAAGAACTACAAAAAAAAAAAAAAAAAA]

[+] EMBL CD079787             [CCAGCCAANAATTTGGCACGAGGTGCTTCGATAAAAAAGTCTTTGCTTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGCCGAGATTTTTGAGCAAGCATCCGTGGCGTTCGGTCGTTTGGCTCAGCTTACCTTAGATCTTAAGCAGTTCCAAGCGCAACAAAATGATGGGGATTCCAAGACCTGTGGGAAGTGGTCACAAAAGGAAGTTGAAGATCTCAAAGATGCTATCGGACGTTTCGGATCTGATCTGTCGAAGGTAGCTGAGGCTATCGAAACAAAGACCATTAACCAGATAAAACAAAAGCTAAAAACCCGGGCTTTCCAGGATGCTGGTCTTGGAGATATTTCCCTTGAAAACGAGGCTGTGGATACAGAAACCAAA CCAAAAGCCACCACTCCAAATGCTACCCCAGTAGAACGTGGAAGACGTAAGCAAGCTTTGAATCAAATGTCTGAACCAGTAGACATGCATCCTCCTAAAAGATCCAGATCTAATGTCGACGATTTGAATGAATATACAAATTATGCATCTGAAGTAGAAGTTCAAGATAAAAAATCCAACCAACCGGCTAGTAACAATAAATCATATA TAATGAAAATGTTACACCTCANAAGAACGATGACGGTCACAATATTTTAAAACAGAAACCAGTTGGCAGTACACTATCTAGTGTTTTATCCAAACCGATATCACTTGCTAGATCAGATGTAAGCAATTNTGATGA                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD074045             [                                                                                                                                                                                                                                                                                                                                                                                                         TACAGAAACCAAACCCAAAAGCCACCACTCCAAATGCTACCCCAGTAGAACGTGGAAGACGTAAGCAAGCTTTGAATCAAATGTCTGAACCAGTAGACATGCATCCTCCTAAAAGATCCAGATCTAATGTCGACGATTTGAATGAATATACAAATTATGCATCTGAAGTAGAAGTTCAAGATAAAAAATCCAACCAACCGGCTAGTAACAATAAATCATATA TAATGAAAATGTTACACCTCAAAAGAACGATGACGGTCACAATATTTTAAAACAGAAACCAGTTGGCAGTACACTATCTAGTGTTTTATCCAAACCGATATCACTTGCTAGATCAGATGTAAGCAATTTTGATGATCGTCATCGCAAAACAACAACACCAGTAAATGTTATAGGTTCTGGATATAGTGCGAATGAATCAAAGTATGAAGATTATGACAGCGATGACAGCGATTATGATGGTGCTGATGGTGGAGGTGGTCGTACACCTGGAGAAGATTATGAATCAGACGAAGAACAAGAGGAAGAGGAAGAAGAAGAAGAGGAAGCCGACGACAATGAGGATTACGATGAATAAACAGCAACAAATTGAATTATTAAATATTTGTGTATATGTCTTCATGATTGTTATTATTATTCA                                                                            ]
[+] EMBL CD088748             [                                                                                                                                                                                                                                                                                                                                                                                                                 CCAAA CCAAAAGCCACCACTCCAAATGCTACCCCAGTAGAACGTGGAAGACGTAAGCAAGCTTTGAATCAAATGTCTGAACCAGTAGACATGCATCCTCCTAAAAGATCCAGATCTAATGTCGACGATTTGAATGAATATACAAATTATGCATCTGAAGTAGAAGTTCAAGATAAAAAATCCAACCAACCGGCTAGTAACAATAAATCATATAGTAATGAAAATGTTACACCTCAAAAGAACGATGACGGTCACAATATTTTAAAACAGAAACCAGTTGGCAGTACACTATCTAGTGTTTTATCCAAACCGATATCACTTGCTAGATCAGATGTAAGCAATTTTGATGATCGTCATCGCAAAACAACAACACCAGTAAATGTTATAGGTTCTGGATATAGTGCGAATGAATCAAAGTATGAAGATTATGACAGCGATGACAGCGATTATGATGGTGCTGATGGTGGAGGTGGTCGTACACCTGGAGAAGATTATGAATC                                                                                                                                                                                                                 ]
[-] EMBL AI395395             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATTTTG TTGTTCTAATGGTGGAGGTGGTCGTACACCTGGAGAAGATTATGAATCAGACGAAGAACAAGAGGAAGAGGAAGAAGAAGAAGAGGAAGCCGACGACAATGAGGATTACGATGAATAAACAGCAACAAATTGAATTATTAAATATTTGTGTATATGTCTTCATGATTGTTATTATTATTCATTATCATGTAAATTAGTGTTTATACTGATAAAATAAGTTAACGATATTAAAGAACTACAAAAAAAAAAAAAAAAAA]




>consensus_8539#0
CCAGCCAANAATTTGGCACGAGGTGCTTCGATAAAAAAGTCTTTGCTTTCCAGACCTCTC
ATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGCCGAGATTTTTGAGCAAGC
ATCCGTGGCGTTCGGTCGTTTGGCTCAGCTTACCTTAGATCTTAAGCAGTTCCAAGCGCA
ACAAAATGATGGGGATTCCAAGACCTGTGGGAAGTGGTCACAAAAGGAAGTTGAAGATCT
CAAAGATGCTATCGGACGTTTCGGATCTGATCTGTCGAAGGTAGCTGAGGCTATCGAAAC
AAAGACCATTAACCAGATAAAACAAAAGCTAAAAACCCGGGCTTTCCAGGATGCTGGTCT
TGGAGATATTTCCCTTGAAAACGAGGCTGTGGATACAGAAACCAAACCAAAAGCCACCAC
TCCAAATGCTACCCCAGTAGAACGTGGAAGACGTAAGCAAGCTTTGAATCAAATGTCTGA
ACCAGTAGACATGCATCCTCCTAAAAGATCCAGATCTAATGTCGACGATTTGAATGAATA
TACAAATTATGCATCTGAAGTAGAAGTTCAAGATAAAAAATCCAACCAACCGGCTAGTAA
CAATAAATCATATATAATGAAAATGTTACACCTCAAAAGAACGATGACGGTCACAATATT
TTAAAACAGAAACCAGTTGGCAGTACACTATCTAGTGTTTTATCCAAACCGATATCACTT
GCTAGATCAGATGTAAGCAATTTTGATGATCGTCATCGCAAAACAACAACACCAGTAAAT
GTTATAGGTTCTGGATATAGTGCGAATGAATCAAAGTATGAAGATTATGACAGCGATGAC
AGCGATTATGATGGTGCTGATGGTGGAGGTGGTCGTACACCTGGAGAAGATTATGAATCA
GACGAAGAACAAGAGGAAGAGGAAGAAGAAGAAGAGGAAGCCGACGACAATGAGGATTAC
GATGAATAAACAGCAACAAATTGAATTATTAAATATTTGTGTATATGTCTTCATGATTGT
TATTATTATTCATTATCATGTAAATTAGTGTTTATACTGATAAAATAAGTTAACGATATT
AAAGAACTACAAAAAAAAAAAAAAAAAA

consensusID : consensus_8539#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [TGACCGGTGACTAACTAAGACTCAGCACTACTTAGTTCAAATTCCTTCGCNTATTCTACATACTAAAGCTCTTATCTGTGAAATACTTTATACCTTCTGTTTCGATAACAAAGTCTTTGCTTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGCCGAGATTTTTGAGCAAGCATCCGTGGCGTTCGGTCGTTTGGCTCAGCTTACTTTAGATCTTAAGCAGTTCCAAGCGCAACAAAATGATGGGGATTCCAAGACCTGTGGGAAGTGGTCACAAAAGGAAGTTGAAGATCTCAAAGATGCTATCGGACGTTTCGGATCTGATCTGTCGAAGGTAGCTGAGGCTATCGAAACAAAGACCATTAACCAGATAAAACAAAAGCTAAAAAACCCGGGCTTTCCAGGATGCTGGTCTTGGAGATATTTCCCTTGAAAACGAGGCTGTGGATACAGAAACCAAACCAAAAGCCACCACTCCAAATGCTA]

[-] EMBL CD191747             [TGACCGGTGACTAACTAAGACTCAGCACTACTTAGTTCAAATTCCTTCGCNTATTCTACATACTAAAGCTCTTATCTGTGAAATACTTTATACCTTCTGTTTCGATAACAAAGTCTTTGCTTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGCCGAGATTTTTGAGCAAGCATCCGTGGCGTTCGGTCGTTTGGCTCAGCTTACTTTAGATCTTAAGCAGTTCCAAGCGCAACAAAATGATGGGGATTCCAAGACCTGTGGGAAGTGGTCACAAAAGGAAGTTGAAGATCTCAAAGATGCTATCGGACGTTTCGGATCTGATCTGTCGAAGGTAGCTGAGGCTATCGAAACAAAGACCATTAACCAGATAAAACAAAAGCTAAAAAACCCGGGCTTTCCAGGATGCTGGTCTTGGAGATATTTCCCTTGAAAACGAGGCTGTGGATACAGAAACCAAACCAAAAGCCACCACTCCAAATGCTA]




>consensus_8539#1
TGACCGGTGACTAACTAAGACTCAGCACTACTTAGTTCAAATTCCTTCGCNTATTCTACA
TACTAAAGCTCTTATCTGTGAAATACTTTATACCTTCTGTTTCGATAACAAAGTCTTTGC
TTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGCCGAG
ATTTTTGAGCAAGCATCCGTGGCGTTCGGTCGTTTGGCTCAGCTTACTTTAGATCTTAAG
CAGTTCCAAGCGCAACAAAATGATGGGGATTCCAAGACCTGTGGGAAGTGGTCACAAAAG
GAAGTTGAAGATCTCAAAGATGCTATCGGACGTTTCGGATCTGATCTGTCGAAGGTAGCT
GAGGCTATCGAAACAAAGACCATTAACCAGATAAAACAAAAGCTAAAAAACCCGGGCTTT
CCAGGATGCTGGTCTTGGAGATATTTCCCTTGAAAACGAGGCTGTGGATACAGAAACCAA
ACCAAAAGCCACCACTCCAAATGCTA

consensusID : consensus_8539#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 291
fasta sequence

                              [CGAACTCAGTAGCATTTATCAGTGGACGATACCACGGGGTCGTTGCATAGAGCACATCATTCTGCAACAAATTCCAATGGGGAAGTATGACCGGTGACTAACTAAGACTCAGCACTACTTAGTTCAAATTCCTTCGCCTATTCTACATACTAAAGCTCTTATCTGTGAAATACTTTATACCTTCTGTTTCGATAAAAAAGTCTTTGCTTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGGCGAGATTTTTGAACCCCCGTCCATATGG]

[+] EMBL CD144135             [CGAACTCAGTAGCATTTATCAGTGGACGATACCACGGGGTCGTTGCATAGAGCACATCATTCTGCAACAAATTCCAATGGGGAAGTATGACCGGTGACTAACTAAGACTCAGCACTACTTAGTTCAAATTCCTTCG                                                                                                                                                           ]
[+] EMBL BG931011             [                                      cTCGTTGCATAGAGCACATCATTCTGCAACAAATTCCAATGGGGAAGTATGACCGGTGACTAACTAAGACTCAGCACTACTTAGTTCAAATTCCTTCGCCTATTCTACATACTAAAGCTCTTATCTGTGAAATACTTTATACCTTCTGTTTCGATAAAAAAGTCTTTGCTTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGGCGAGATTTTTGAACCCCCGTCCATATGG]




>consensus_8539#2
CGAACTCAGTAGCATTTATCAGTGGACGATACCACGGGGTCGTTGCATAGAGCACATCAT
TCTGCAACAAATTCCAATGGGGAAGTATGACCGGTGACTAACTAAGACTCAGCACTACTT
AGTTCAAATTCCTTCGCCTATTCTACATACTAAAGCTCTTATCTGTGAAATACTTTATAC
CTTCTGTTTCGATAAAAAAGTCTTTGCTTTCCAGACCTCTCATCACTTATTTTCCGAATA
ATGGCTAACTTTTCGAGAGTGGGCGAGATTTTTGAACCCCCGTCCATATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8539#0      ------------------------------------------------------------
consensus_8539#1      TGACCGGTGACTAACTAAGACTCAGCACTACTTAGTTCAAATTCCTTCGCNTATTCTACA 60
consensus_8539#2      ------------------------------------------------------------
                                                                                  

consensus_8539#0      --------------CCAGCCAANAATTTGGCACGAGGTGCTTCGATAAAAAAGTCTTTGC 46
consensus_8539#1      TACTAAAGCTCTTATCTGTGAAATACTTTATACCTTCTGTTTCGATAACAAAGTCTTTGC 120
consensus_8539#2      ---------------------CGAACTCAGTAGCATTTA--TCAGTGGACGATACCACGG 37
                                              * *    *     *   **  *     *  *   * 

consensus_8539#0      TTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGCCGAG 106
consensus_8539#1      TTTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGCCGAG 180
consensus_8539#2      GGTCGTTGCATAGAGCACATCATTCTGCAACAAATTCCAA--TGGGGAAGTATGACCGG- 94
                        **    * *        * *** * * *  ***  * *  *     **  ** ***  

consensus_8539#0      ATTTTTGAGCAAGCATCCGTGGCGTTCGGT-CGTTTGGCTCAGCTTACCTTAGATCTTAA 165
consensus_8539#1      ATTTTTGAGCAAGCATCCGTGGCGTTCGGT-CGTTTGGCTCAGCTTACTTTAGATCTTAA 239
consensus_8539#2      -TGACTAACTAAGACTCAGCACTACTTAGTTCAAATTCCTTCGCCTATTCTACATACTAA 153
                       *   * *  ***  ** *      *  ** *   *  **  ** **   ** **  ***

consensus_8539#0      GCAGTTCCAAGCGCAACAAAATGATGGGGATTCCAAGACCTGTGGGAAGTGGTCACAAAA 225
consensus_8539#1      GCAGTTCCAAGCGCAACAAAATGATGGGGATTCCAAGACCTGTGGGAAGTGGTCACAAAA 299
consensus_8539#2      --AGCTCTTATCTGTGAAATACTTTATACCTTCTGTTTCGATAAAAAAGTCTTTGCT--- 208
                        ** **  * *     ** *   *     ***     *       ****  *  *    

consensus_8539#0      GGAAGTTGAAGATCTCAAAGATGCTATCGGACGTTTCGGATCTGATCTGTCGAAGGTAGC 285
consensus_8539#1      GGAAGTTGAAGATCTCAAAGATGCTATCGGACGTTTCGGATCTGATCTGTCGAAGGTAGC 359
consensus_8539#2      -----TTCCAGACCTCTCATCACTTATTTTCCGAATAATGGCTAACTTTTCGAGAGTGGG 263
                           **  *** ***  *     ***    **  *     ** *  * ****  ** * 

consensus_8539#0      TGAGGCTATCGAAACAAAGACCATTAACCAGATAAAACAAAAGCTAAAAA-CCCGGGCTT 344
consensus_8539#1      TGAGGCTATCGAAACAAAGACCATTAACCAGATAAAACAAAAGCTAAAAAACCCGGGCTT 419
consensus_8539#2      CGAGATTTTTGAACCCCCGTCCATATGG-------------------------------- 291
                       ***  * * *** *   * ****                                    

consensus_8539#0      TCCAGGATGCTGGTCTTGGAGATATTTCCCTTGAAAACGAGGCTGTGGATACAGAAACCA 404
consensus_8539#1      TCCAGGATGCTGGTCTTGGAGATATTTCCCTTGAAAACGAGGCTGTGGATACAGAAACCA 479
consensus_8539#2      ------------------------------------------------------------
                                                                                  

consensus_8539#0      AACCAAAAGCCACCACTCCAAATGCTACCCCAGTAGAACGTGGAAGACGTAAGCAAGCTT 464
consensus_8539#1      AACCAAAAGCCACCACTCCAAATGCTA--------------------------------- 506
consensus_8539#2      ------------------------------------------------------------
                                                                                  

consensus_8539#0      TGAATCAAATGTCTGAACCAGTAGACATGCATCCTCCTAAAAGATCCAGATCTAATGTCG 524
consensus_8539#1      ------------------------------------------------------------
consensus_8539#2      ------------------------------------------------------------
                                                                                  

consensus_8539#0      ACGATTTGAATGAATATACAAATTATGCATCTGAAGTAGAAGTTCAAGATAAAAAATCCA 584
consensus_8539#1      ------------------------------------------------------------
consensus_8539#2      ------------------------------------------------------------
                                                                                  

consensus_8539#0      ACCAACCGGCTAGTAACAATAAATCATATATAATGAAAATGTTACACCTCAAAAGAACGA 644
consensus_8539#1      ------------------------------------------------------------
consensus_8539#2      ------------------------------------------------------------
                                                                                  

consensus_8539#0      TGACGGTCACAATATTTTAAAACAGAAACCAGTTGGCAGTACACTATCTAGTGTTTTATC 704
consensus_8539#1      ------------------------------------------------------------
consensus_8539#2      ------------------------------------------------------------
                                                                                  

consensus_8539#0      CAAACCGATATCACTTGCTAGATCAGATGTAAGCAATTTTGATGATCGTCATCGCAAAAC 764
consensus_8539#1      ------------------------------------------------------------
consensus_8539#2      ------------------------------------------------------------
                                                                                  

consensus_8539#0      AACAACACCAGTAAATGTTATAGGTTCTGGATATAGTGCGAATGAATCAAAGTATGAAGA 824
consensus_8539#1      ------------------------------------------------------------
consensus_8539#2      ------------------------------------------------------------
                                                                                  

consensus_8539#0      TTATGACAGCGATGACAGCGATTATGATGGTGCTGATGGTGGAGGTGGTCGTACACCTGG 884
consensus_8539#1      ------------------------------------------------------------
consensus_8539#2      ------------------------------------------------------------
                                                                                  

consensus_8539#0      AGAAGATTATGAATCAGACGAAGAACAAGAGGAAGAGGAAGAAGAAGAAGAGGAAGCCGA 944
consensus_8539#1      ------------------------------------------------------------
consensus_8539#2      ------------------------------------------------------------
                                                                                  

consensus_8539#0      CGACAATGAGGATTACGATGAATAAACAGCAACAAATTGAATTATTAAATATTTGTGTAT 1004
consensus_8539#1      ------------------------------------------------------------
consensus_8539#2      ------------------------------------------------------------
                                                                                  

consensus_8539#0      ATGTCTTCATGATTGTTATTATTATTCATTATCATGTAAATTAGTGTTTATACTGATAAA 1064
consensus_8539#1      ------------------------------------------------------------
consensus_8539#2      ------------------------------------------------------------
                                                                                  

consensus_8539#0      ATAAGTTAACGATATTAAAGAACTACAAAAAAAAAAAAAAAAAA 1108
consensus_8539#1      --------------------------------------------
consensus_8539#2      --------------------------------------------