cluster # 8544

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Schistosoma mansoni
cluster # 8544 cluster # 8544 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8544#0 length = 617 sequences # 4

consensus_8544#1 length = 314 sequences # 2
consensus_8544#2 length = 281 sequences # 1

consensusID : consensus_8544#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 617
fasta sequence

                              [CTCGAGGCCAAAAATTCGGCACGAGG-------GTTCCCGACGCTCCATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGTATGAGGCAGCCAGCCCAGAAGGCTACTTATGC-TGCTTTATATTCATTTCAAGCACAGGTTATCCATTCCTTTTCCTCGTTATTTTCTAGGAAGAGGGAGATTTGTCTTTTCAGAGGGGAGATTTGTTAACGTTTATAAGACAAAAGCGGGAGTGGATTCTATGTAAATCAGGCGATAACCGTATCGGTTGGGTTCCTTCAAATTACTTAACTCCGTTTACACCTGAAATTGTTGCTAGATTAAAGGGTCTTGGTGACCAACTTGGTTTAACCTATTGTCATATGCTGAAATCTGTTCAGTTACCAGCCACTGGGGAAGGTTGTAAGG]

[+] EMBL CD080009             [CTCGAGGCCAAAAATTCGGCACGAGG       GTTCCCGACGCTCCATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTGTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTAACACTCTTCCAGTACTCGTATGAGGCAGCCAGCCCAGAAGGCTACTTATGC TGCTTTATATTCATTTCAAGCACAGGTTATCCATTCCTTTTCCTCGTTATTTTCTAGGAAGAGGGAGATTTGTCTTTTCAGAGGGGAGATTTGTTAACGTTTATAAGACAAAAGCGGGAGTGGATTCTATGTAAATCAGGCGATAACCGTATCGGTTGGGTTCCTTCAAATTACTTAACTCCGTTTACACCTGAAATTGTTGCTAGATTAAAGGGTCTTGGTGACCAACTTGGTTTAACCTATTGTCATATGCTGAAATCTGTTCAGTTACCAGCCACTGGGGAAGGTTGTAAGG]
[+] EMBL CD077755             [           gAATTCGTCACGAGGCGAACTAGTTCCCGACGCTCCATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGTATGAGGCAGCCAGCCCAGAAGGCTACTTATGCTTGC TTATATTCATTTCAAGCACAGGaa                                                                                                                                                                                                                                                                           ]
[+] EMBL CD077558             [                      GAGGA      GTTCCCGACGCTCCATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATAC                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD083521             [                                  gTCCCGACGCTCCATGGTATTTTGGAGAAATAAGCA GGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATNAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGTATGAGGCAGCCAGCCCAGAAGGCTACTTATGC TGCTTTATATTCATTTCAAGCACAGGTTATCCATTCCTTTTCCTCGTTATTTTCTAGGAAGAGGGAGATTTGTCTTTTCAGAGGGGAGATTTGTTAACGTTTATAAGACAAAAGCGGGAGTGGATTCTATGTAAATCAGGCG                                                                                                                                                         ]




>consensus_8544#0
CTCGAGGCCAAAAATTCGGCACGAGGGTTCCCGACGCTCCATGGTATTTTGGAGAAATAA
GCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTG
ACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTT
ACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTT
CGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGTATGAGGCAGC
CAGCCCAGAAGGCTACTTATGCTGCTTTATATTCATTTCAAGCACAGGTTATCCATTCCT
TTTCCTCGTTATTTTCTAGGAAGAGGGAGATTTGTCTTTTCAGAGGGGAGATTTGTTAAC
GTTTATAAGACAAAAGCGGGAGTGGATTCTATGTAAATCAGGCGATAACCGTATCGGTTG
GGTTCCTTCAAATTACTTAACTCCGTTTACACCTGAAATTGTTGCTAGATTAAAGGGTCT
TGGTGACCAACTTGGTTTAACCTATTGTCATATGCTGAAATCTGTTCAGTTACCAGCCAC
TGGGGAAGGTTGTAAGG

consensusID : consensus_8544#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 314
fasta sequence

                              [TGGCGGTCTAACTAGTTCCCGACGCTCCGTTAGTTTAGATAATTTGTTTTGATATTGTAGATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAACACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGAAATG]

[+] EMBL CD197958             [TGGCGGTCTAACTAGTTCCCGACGCTCCGTTAGTTTAGATAATTTGTTTTGATATTGTAGATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAACACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGAAATG]
[+] EMBL CD185950             [ GGCGGTCGAACTAGTTCCCGACGCTCCGTTAGTTTAGATAATTTGTTTTGATATTGTAGATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCTAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGtatg ]




>consensus_8544#1
TGGCGGTCTAACTAGTTCCCGACGCTCCGTTAGTTTAGATAATTTGTTTTGATATTGTAG
ATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGT
TGGAACATTTTTGATACGTGACAACACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGA
GGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTT
TGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTC
CAGTACTCGAAATG

consensusID : consensus_8544#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [TGGCGGTCGAACTAGTTCCCGACGCTCCATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGTATG]

[+] EMBL CD185940             [TGGCGGTCGAACTAGTTCCCGACGCTCCATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGTATG]




>consensus_8544#2
TGGCGGTCGAACTAGTTCCCGACGCTCCATGGTATTTTGGAGAAATAAGCAGGGAAAAAG
CTAATGAGATTCTAATTGACCAGCCTGTTGGAACATTTTTGATACGTGACAGCACCACAA
AGTCAGGTTACGTGCTGGCGATAAAAGAGGCGAACGAAGTTAAACGTTACTTACTTACAT
GGGCACCTCAGCTGAAAAAGTTCAAGTTTGGCGACACTCTTTACTCTTCGCTGGATGAGT
TGGTTAGACTTCATACTTCACACTCTTCCAGTACTCGTATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8544#1      TGGCGGTCTAACTAGTTCCCGACGCTCCGTTAGTTTAGATAATTTGTTTTGATATTGTAG 60
consensus_8544#2      TGGCGGTCGAACTAGTTCCCGACGCTCC-------------------------------- 28
consensus_8544#0      -----------CTCGAGGCCAAAAATTCGGCA-------CGAGGGTTCCCGACGCTCC-- 40
                                 ** *   ** *   * *                                

consensus_8544#1      ATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGT 120
consensus_8544#2      ATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGT 88
consensus_8544#0      ATGGTATTTTGGAGAAATAAGCAGGGAAAAAGCTAATGAGATTCTAATTGACCAGCCTGT 100
                      ************************************************************

consensus_8544#1      TGGAACATTTTTGATACGTGACAACACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGA 180
consensus_8544#2      TGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGA 148
consensus_8544#0      TGGAACATTTTTGATACGTGACAGCACCACAAAGTCAGGTTACGTGCTGGCGATAAAAGA 160
                      *********************** ************************************

consensus_8544#1      GGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTT 240
consensus_8544#2      GGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTT 208
consensus_8544#0      GGCGAACGAAGTTAAACGTTACTTACTTACATGGGCACCTCAGCTGAAAAAGTTCAAGTT 220
                      ************************************************************

consensus_8544#1      TGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTC 300
consensus_8544#2      TGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTC 268
consensus_8544#0      TGGCGACACTCTTTACTCTTCGCTGGATGAGTTGGTTAGACTTCATACTTCACACTCTTC 280
                      ************************************************************

consensus_8544#1      CAGTACTCGAAATG---------------------------------------------- 314
consensus_8544#2      CAGTACTCGTA-TG---------------------------------------------- 281
consensus_8544#0      CAGTACTCGTA-TGAGGCAGCCAGCCCAGAAGGCTACTTATGCTGCTTTATATTCATTTC 339
                      ********* * **                                              

consensus_8544#1      ------------------------------------------------------------
consensus_8544#2      ------------------------------------------------------------
consensus_8544#0      AAGCACAGGTTATCCATTCCTTTTCCTCGTTATTTTCTAGGAAGAGGGAGATTTGTCTTT 399
                                                                                  

consensus_8544#1      ------------------------------------------------------------
consensus_8544#2      ------------------------------------------------------------
consensus_8544#0      TCAGAGGGGAGATTTGTTAACGTTTATAAGACAAAAGCGGGAGTGGATTCTATGTAAATC 459
                                                                                  

consensus_8544#1      ------------------------------------------------------------
consensus_8544#2      ------------------------------------------------------------
consensus_8544#0      AGGCGATAACCGTATCGGTTGGGTTCCTTCAAATTACTTAACTCCGTTTACACCTGAAAT 519
                                                                                  

consensus_8544#1      ------------------------------------------------------------
consensus_8544#2      ------------------------------------------------------------
consensus_8544#0      TGTTGCTAGATTAAAGGGTCTTGGTGACCAACTTGGTTTAACCTATTGTCATATGCTGAA 579
                                                                                  

consensus_8544#1      --------------------------------------
consensus_8544#2      --------------------------------------
consensus_8544#0      ATCTGTTCAGTTACCAGCCACTGGGGAAGGTTGTAAGG 617