cluster # 8562

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Schistosoma mansoni
cluster # 8562 cluster # 8562 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8562#0 length = 791 sequences # 2
consensus_8562#1 length = 599 sequences # 1

consensus_8562#2 length = 522 sequences # 3
consensus_8562#3 length = 145 sequences # 1

consensusID : consensus_8562#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 791
fasta sequence

                              [GATTCTGAGGACTCAATGGTTATTGAATCCTTAAATCTATACTATCATTTACCATGTTTTGTATGTGCAAGATGTGGAATTGCGCTAGGTGATGGTCTATCAGATGTGGAAGTTCGTGTTCGACGTAACTTGCTTTACTGTTCACATTGTCATTCCAAGAATCTCACCGTATCAAATAATAACAAAAATGAATGTCATCCACAGATGCAAAGTGTGCAACCTAGTTCTCAATCACTAAAACCACTTAAACCCACTGATAAAAGACACCGAAACGGTCCAGAACAGCAGTTATCATCAAATTTAAATAAACATCATGTCCTGTAAACTGCCTTCGTTTTTCTTGTTTTCACCAAAAGAACACAATTTCTCAATATTGTGCACTGTGACTGACGATTCGAGCTTAATAACTGTGATTTCGACGGTTTCAAACGGGAAATTTAGATCACTAGAAGGCTTTGTAGGATGATTCCTACTTATTCACAAATTTGAGGTATAATATGCACTTTTATCTTTCATAAAAACTGAAGCTACAATTTTGTATGCATAATTTTCTTTTGCTTGGCAAAATTCTCTTATTTTGCTACTATTACTTTCACAATTGATTCGTTAGCTGTCCTATGAAATACCATATATATATTATCATCTAATTNTCCCTGCATGCGATTCTGTCTTCACACTTATGTACAATCCTTTT-AAAATATCGTAATTTAAACTGTATAATCGTAATATATGTAAGATATCTT-AAATACTACTATTGTACGTTNATAGTAGCATTGAACCATCT-AGTAAAG]

[+] EMBL CD081122             [GATTCTGAGGACTCAATGGTTATTGAATCCTTAAATCTATACTATCATTTACCATGTTTTGTATGTGCAAGATGTGGAATTGCGCTAGGTGATGGTCTATCAGATGTGGAAGTTCGTGTTCGACGTAACTTGCTTTACTGTTCACATTGTCATTCCAAGAATCTCACCGTATCAAATAATAACAAAAATGAATGTCATCCACAGATGCAAAGTGTGCAACCTAGTTCTCAATCACTAAAACCACTTAAACCCACTGATAAAAGACACCGAAACGGTCCAGAACAGCAGTTATCATCAAATTTAAATAAACATCATGTCCTGTAAACTGCCTTCGTTTTTCTTGTTTTCACCAAAAGAACACAATTTCTCAATATTGTGCACTGTGACTGACGATTCGAGCTTAATAACTGTGATTTCGACGGTTTCAAACGGGAAATTTAGATCACTAGAAGGCTTTGTAGGATGATTCCTACTTATTCACAAATTTGAGGTATAATATGCACTTTTATCTTTCATAAAAACTGAAGCTACAATTTTGTATGCATAATTTTCTTTTGCTTGGCAAAATTCTCTTATTTTGCTACTATTACTTTCACAATTGATTCGTTAGCTGTCCTATGAAATACCATATATATATTATCATCTAATTNTCCCTGCATGCGATTCTGTCTTCACACTTATGTACAATCCTTTT AAAATATCGTAATTTAAACTGTATAATCGTAATATATGTAAGATATCTT AAATACTACTATTGTACGTTNATAGTAGCATTGAACCATCT AGTA   ]
[-] EMBL CD074944             [                                                                                                                                                                        GTATCAAATAATAACAAAAATGAATGTCATCCACAGATGCAAAGTGTGCAACCTAGTTCTCAATCACTAAAACCACTTAAACCCACTGATAAAAGACACCGAAACGGTCCAGAACAGCAGTTATCATCAAATTTAAATAAACATCATGTCCTGTAAACTGCCTTCGTTTTTCTTGTTTTCACCAAAAGAACACAATTTCTCAATATTGTGCACTGTGACTGACGATTCGAGCTTAATAACTGTGATTTCGACGGTTTCAAACGGGAAATTTAGATCACTAGAAGGCTTTGTAGGATGATTCCTACTTATTCACAAATTTGAGGTATAATATGCACTTTTATCTTTCATAAAAACTGAAGCTACAATTTTGTATGCATAATTTTCTTTTGCTTGGCAAAATTCTCTTATTTTGCTACTATTACTTTCACAATTGATTCGTTAGCTGTCCTATGAAATACCATATATATATTATCATCTAATTTTCCCTGCATGCGATTCTGTCTTCACACTTATGTACAATCCTTTTAAAAATATCGTAATTTAAACTGTATAATCGTAATATATGTAAGATATCTTAAAATACTACTATTGTACGTTTATAGTAGCATTGAAACATCTAAGTAAAG]




>consensus_8562#0
GATTCTGAGGACTCAATGGTTATTGAATCCTTAAATCTATACTATCATTTACCATGTTTT
GTATGTGCAAGATGTGGAATTGCGCTAGGTGATGGTCTATCAGATGTGGAAGTTCGTGTT
CGACGTAACTTGCTTTACTGTTCACATTGTCATTCCAAGAATCTCACCGTATCAAATAAT
AACAAAAATGAATGTCATCCACAGATGCAAAGTGTGCAACCTAGTTCTCAATCACTAAAA
CCACTTAAACCCACTGATAAAAGACACCGAAACGGTCCAGAACAGCAGTTATCATCAAAT
TTAAATAAACATCATGTCCTGTAAACTGCCTTCGTTTTTCTTGTTTTCACCAAAAGAACA
CAATTTCTCAATATTGTGCACTGTGACTGACGATTCGAGCTTAATAACTGTGATTTCGAC
GGTTTCAAACGGGAAATTTAGATCACTAGAAGGCTTTGTAGGATGATTCCTACTTATTCA
CAAATTTGAGGTATAATATGCACTTTTATCTTTCATAAAAACTGAAGCTACAATTTTGTA
TGCATAATTTTCTTTTGCTTGGCAAAATTCTCTTATTTTGCTACTATTACTTTCACAATT
GATTCGTTAGCTGTCCTATGAAATACCATATATATATTATCATCTAATTNTCCCTGCATG
CGATTCTGTCTTCACACTTATGTACAATCCTTTTAAAATATCGTAATTTAAACTGTATAA
TCGTAATATATGTAAGATATCTTAAATACTACTATTGTACGTTNATAGTAGCATTGAACC
ATCTAGTAAAG

consensusID : consensus_8562#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence

                              [GCGGATTTCGAATCGGTTGTCGCTTTCGGGTTGCCCACACTGGTGTAAGATATTGCTTCATGAAGTACCTGTAAACGGAACTTTATAAGTAGTAGTCTTGTAGACTTGGATGCGAGGCTACTCCTCAAGGGGCAAGTGCTTAAAACCAGACACTTGACATTTTCGTGGCACGTTATGGGAATATCCTACCTTTACTTTGAAGACTTTATCGGTAGCAATCAAAATCCTTGGGATATGGTACTATTACATCCGAACGAACAATAAATGCATAATGACTTCTAGAGATTAATTATGGACTACTATATATATATATATATACAACAGAGCATTGCTTAACCGGATGAAAGACGCAGTAGACGCTCAACTTCGAGATCAACAGGTTGGATTCCGTAAGGATCGGTCGTGCACAGACCAGATTGCGACACCACGGGTCACCGTTGAACAATCAACTGAGTGGAACTCATCACTATACATCAACTTCATTGACTATGAGAAGGCGTTTGACAGTGTACATAGGAGAACATCATGGAAACTTCTTCGACACTATGAAGTTCCTGAGAAGATTATCAACATTATCCAGAACTCATATGACGGACTAC]

[+] EMBL CD085090             [GCGGATTTCGAATCGGTTGTCGCTTTCGGGTTGCCCACACTGGTGTAAGATATTGCTTCATGAAGTACCTGTAAACGGAACTTTATAAGTAGTAGTCTTGTAGACTTGGATGCGAGGCTACTCCTCAAGGGGCAAGTGCTTAAAACCAGACACTTGACATTTTCGTGGCACGTTATGGGAATATCCTACCTTTACTTTGAAGACTTTATCGGTAGCAATCAAAATCCTTGGGATATGGTACTATTACATCCGAACGAACAATAAATGCATAATGACTTCTAGAGATTAATTATGGACTACTATATATATATATATATACAACAGAGCATTGCTTAACCGGATGAAAGACGCAGTAGACGCTCAACTTCGAGATCAACAGGTTGGATTCCGTAAGGATCGGTCGTGCACAGACCAGATTGCGACACCACGGGTCACCGTTGAACAATCAACTGAGTGGAACTCATCACTATACATCAACTTCATTGACTATGAGAAGGCGTTTGACAGTGTACATAGGAGAACATCATGGAAACTTCTTCGACACTATGAAGTTCCTGAGAAGATTATCAACATTATCCAGAACTCATATGACGGACTAC]




>consensus_8562#1
GCGGATTTCGAATCGGTTGTCGCTTTCGGGTTGCCCACACTGGTGTAAGATATTGCTTCA
TGAAGTACCTGTAAACGGAACTTTATAAGTAGTAGTCTTGTAGACTTGGATGCGAGGCTA
CTCCTCAAGGGGCAAGTGCTTAAAACCAGACACTTGACATTTTCGTGGCACGTTATGGGA
ATATCCTACCTTTACTTTGAAGACTTTATCGGTAGCAATCAAAATCCTTGGGATATGGTA
CTATTACATCCGAACGAACAATAAATGCATAATGACTTCTAGAGATTAATTATGGACTAC
TATATATATATATATATACAACAGAGCATTGCTTAACCGGATGAAAGACGCAGTAGACGC
TCAACTTCGAGATCAACAGGTTGGATTCCGTAAGGATCGGTCGTGCACAGACCAGATTGC
GACACCACGGGTCACCGTTGAACAATCAACTGAGTGGAACTCATCACTATACATCAACTT
CATTGACTATGAGAAGGCGTTTGACAGTGTACATAGGAGAACATCATGGAAACTTCTTCG
ACACTATGAAGTTCCTGAGAAGATTATCAACATTATCCAGAACTCATATGACGGACTAC

consensusID : consensus_8562#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 522
fasta sequence

                              [TTCTTCGACACTATGTAGTTTCTCAGAAGATTGTCAACATTATCCAGAACTCATACGACGGACTACACTGCAAAGTGGTGCATGGAGAACAGCTGACAGATGCATTCCAAGTAAGGACCGGAGTCAGACAAGACTGCCTACTCTTCCCCCTTTCTCCTTCTTCTGGTGGTTGACTGGATTATGAAGATCAACACATCTGACAGGAAGCAAAGAATGAAATGGACAGGTTTTACGCAGCTAGACGATTTGGACTTCACAGATGACCTGGCTCTTCTATTCCATACATATCAACAAATGCAGGTCAAGACAACCAGTGTAGCAGAAGCCTATGCTTCAATAGGCCTTAACATACACAACAGGGAAAGATTCTCAACTTCGAAACAGGAAACACCAACCCAATCACACATGATGTGGAAATTCTGGAAGAGGTAGGAACTTTTACGTACCTAGACAGTATCATCGATGAACGAGGAGGATCCGATGCAGATGTGAAGGTATGGATTGG-CANAGCAAGGTCAGCAT]

[+] EMBL CD089051             [TTCTTCGACACTATGTAGTTTCTCAGAAGATTGTCAACATTATCCAGAACTCATACGACGGACTACACTGCAAAGTGGTGCATGGAGAACAGCTGACAGATGCATTCCAAGTAAGGACCGGAGTCAGACAAGACTGCCTACTCTTCCCCCTTTCTCCTTCTTCTGGTGGTTGACTGGATTATGAAGATCAACACATCTGACAGGAAGCAAAGAATGAAATGGACAGGTTTTACGCAGCTAGACGATTTGGACTTCACAGATGACCTGGCTCTTCTATTCCATACATATCAACAAATGCAGGTCAAGACAACCAGTGTAGCAGAAGCCTATGCTTCAATAGGCCTTAACATACACAACAGGGAAAGATTCTCAACTTCGAAACAGGAAACACCAACCCAATCACACATGATGTGGAAATTCTGGAAGAGGTAGGAACTTTTACGTACCTAGACAGTATCATCGATGAACGANGAGGATCCGATGCAGATGTGAAGGTATGGATTGGNCA AGCAAGGTCAGCAT]
[+] EMBL CD089087             [TTCTTCGACACTATGTAGTTTCTCAGAAGATTGTCAACATTATCCAGAACTCATACGACGGACTACACTGCAAAGTGGTGCATGGAGAACAGCTGACAGATGCATTCCAAGTAAGGACCGGAGTCAGACAAGACTGCCTACTCTTCCCCCTTTCTCCTTCTTCTGGTGGTTGACTGGATTATGAAGATCAACACATCTGACAGGAAGCAAAGAATGAAATGGACAGGTTTTACGCAGCTAGACGATTTGGACTTCACAGATGACCTGGCTCTTCTATTCCATACATATCAACAAATGCAGGTCAAGACAACCAGTGTAGCAGAAGCCTATGCTTCAATAGGCCTTAACATACACAACAGGGAAAGATTCTCAACTTCGAAACAGGAAACACCAACCCAATCACACATGATGTGGAAATTCTGGAAGAGGTAGGAACTTTTACGTACCTAGACAGTATCATCGATGAACGAGGAGGATCCGATGCAGATGTGAAGGTACGGATTGG CANAGCAAGGTCAGCAT]
[+] EMBL CD089198             [TTCTTCGACACTATGTAGTTTCTCAGAAGATTGTCAACATTATCCAGAACTCATACGACGGACTACACTGCAAAGTGGTGCATGGAGAACAGCTGACAGATGCATTCCAAGTAAGGACCGGAGTCAGACAAGACTGCCTACTCTTCCCCCTTTCTCCTTCTTCTGGTGGTTGACTGGATTATGAAGATCAACACATCTGACAGGAAGCAAAGAATGAAATGGACAGGTTTTACGCAGCTAGACGATTTGGACTTCACAGATGACCTGGCTCTTCTATTCCATACATATCAACAAATGCAGGTCAAGACAACCAGTGTAGCAGAAGCCTATGCTTCAATAGGCCTTAACATACACAACAGGGAAAGATTCTCAACTTCGAAACAGGAAACACCAACCCAATCACACATGATGTGGAAATTCTGGAAGAGGTAGGAACTTTTACGTACCTAGACAGTATCATCGATGAACGAGGAGGATCCGATGCAGATGTGAAGGTATGGATTGG CANAGCAAGGTCAGCAT]




>consensus_8562#2
TTCTTCGACACTATGTAGTTTCTCAGAAGATTGTCAACATTATCCAGAACTCATACGACG
GACTACACTGCAAAGTGGTGCATGGAGAACAGCTGACAGATGCATTCCAAGTAAGGACCG
GAGTCAGACAAGACTGCCTACTCTTCCCCCTTTCTCCTTCTTCTGGTGGTTGACTGGATT
ATGAAGATCAACACATCTGACAGGAAGCAAAGAATGAAATGGACAGGTTTTACGCAGCTA
GACGATTTGGACTTCACAGATGACCTGGCTCTTCTATTCCATACATATCAACAAATGCAG
GTCAAGACAACCAGTGTAGCAGAAGCCTATGCTTCAATAGGCCTTAACATACACAACAGG
GAAAGATTCTCAACTTCGAAACAGGAAACACCAACCCAATCACACATGATGTGGAAATTC
TGGAAGAGGTAGGAACTTTTACGTACCTAGACAGTATCATCGATGAACGAGGAGGATCCG
ATGCAGATGTGAAGGTATGGATTGGCANAGCAAGGTCAGCAT

consensusID : consensus_8562#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 145
fasta sequence

                              [TCTTCACACTTATGTACAATCCTTTTAAAAATATCGTAATTTAAACTGTATAATCGTAATATATGTAAGATATTTTAAAAAAGTAATATTGTACGTTTATAGTAGCATTGAAACATGTAAGTAAAGATATTGGGCAAGAAACAAT]

[-] EMBL CD077237             [TCTTCACACTTATGTACAATCCTTTTAAAAATATCGTAATTTAAACTGTATAATCGTAATATATGTAAGATATTTTAAAAAAGTAATATTGTACGTTTATAGTAGCATTGAAACATGTAAGTAAAGATATTGGGCAAGAAACAAT]




>consensus_8562#3
TCTTCACACTTATGTACAATCCTTTTAAAAATATCGTAATTTAAACTGTATAATCGTAAT
ATATGTAAGATATTTTAAAAAAGTAATATTGTACGTTTATAGTAGCATTGAAACATGTAA
GTAAAGATATTGGGCAAGAAACAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8562#0      GATTCTGAGGACTCAATGGTTATTGAATCCTTAAATCTATACTATCATTTACCATGTTTT 60
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      GTATGTGCAAGATGTGGAATTGCGCTAGGTGATGGTCTATCAGATGTGGAAGTTCGTGTT 120
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ------------------------------------------------------------
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      CGACGTAACTTGCTTTACTGTTCACATTGTCATTCCAAGAATCTCACCGTATCAAATAAT 180
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      -------------------------------------------------------GCGGA 5
consensus_8562#2      ------------------------------------------------------------
                                                                                  

consensus_8562#0      AACAAAAATGAATGTCATCCACAGAT-GCAAAGTGTGCAACCTAGTTCTCAATCACTAAA 239
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      TTTCGAATCGGTTGTCGCTTTCGGGTTGCCCACACTGGTGTAAGATATTGCTTCATGAAG 65
consensus_8562#2      -----------------------------------------------TTCTTCGACACTA 13
                                                                                  

consensus_8562#0      ACCACTTAAACCCACTGATAAAAGACACCGAAACGGTCCAGAACAGCAGTTATCATCAAA 299
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      TACCTGTAAACGGAACTTTATAAG---TAGTAGTCTTGTAGACTTGGATGCGAGGCTACT 122
consensus_8562#2      TGTAGTTTCTCAGAAGATTGT------CAACATTATCCAGAACTCATACGACGGACTACA 67
                                                                                  

consensus_8562#0      TTTAAATAAACATCATGTCCTGTAAACTGCCTTCGTTTTTCTTGTTTTCACCAAAAGAAC 359
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      CCTCAAGGGGCAAGTGCTTAAAACCAGACACTTGACATTTTCGTGGCACGTTATGGGAAT 182
consensus_8562#2      CTGCAAAGTG---GTGCATGGA---GAACAGCTGACAGATGCATTCCAAGTAAGGACCGG 121
                                                                                  

consensus_8562#0      ACAATTTCTCAATATTGTGCACTGTGAC--TGACGATTCGAGCTTAATAACTGTGATTTC 417
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ATCCTACCTTTACTTTGAAGACTTTATCGGTAGCAATCAAAATCCTTGGGATATGGTACT 242
consensus_8562#2      AGTCAGACAAGACTGCCTACTCTTCCCC---------CTTTCTCCTTCTTCTGGTGGTTG 172
                                                                                  

consensus_8562#0      GACGGTTTCAAACGGGAAATTTAGATCACTAGAAGGCTTTGTAGGATGATTCCTACTTAT 477
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      ATTACATCCGAACGAACAAT--AAATGCATAATGACTTCTAGAGATTAATTATGGACTAC 300
consensus_8562#2      ACTGGATTATGAAGATCAAC----ACATCTGACAGGAAGCAAAGAATGAAATGGACAGGT 228
                                                                                  

consensus_8562#0      TCACAAATTTGAGGTATAATATGCACTTTTATCTTTCATAAAAACTGAAGCTACAATTTT 537
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      TATATATATATATATATACAACAGAGCATTGCTTAACCGGATGAAAGACGCAGTAG---- 356
consensus_8562#2      TTTACGCAGCTAGACGATTTGGACTTCACAGATGACCTGGCTCTTCTATTCCATACA--- 285
                                                                                  

consensus_8562#0      GTATGCATAATTTTCTTTTGCTTGGCAAAATTCTCTTATTTTGCTACTATTACTTTCACA 597
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      --ACGCTCAACTT-------CGAGATCAACAGGTTGGATTCCGTAAGGATCGGTCGTGCA 407
consensus_8562#2      -TATCAACAAATG--------CAGGTCAAGACAACCAGTGTAGCAGAAGCCTATGCTTCA 336
                                                                                  

consensus_8562#0      ATTGATTCGTTAGCT-GTCCTATGAAATACCATATATATATTATCATCTAATTNTCCCTG 656
consensus_8562#3      ------------------------------------------------------------
consensus_8562#1      -CAGACCAGATTGCG-ACACCACGGGTCACCGTTGAACAATCAACTGAGTGGAACTCATC 465
consensus_8562#2      ATAGGCCTTAACATACACAACAGGGAAAGATTCTCAACTTCGAAACAGGAAACACCAACC 396
                                                                                  

consensus_8562#0      CATGCGATTCTGTCTTCACACTTATGTACAATCCTTTTAAAA-TATCGTAATTTAAACTG 715
consensus_8562#3      ------------TCTTCACACTTATGTACAATCCTTTTAAAAATATCGTAATTTAAACTG 48
consensus_8562#1      ACTATACATCAACTTCATTGACTATGAGAAGGCGTTTGACAG----TGTACATAGGAGAA 521
consensus_8562#2      CAATCACACATGATGTGGAAATTCTG-GAAGAGGTAGGAACTTTTACGTACCT-AGACAG 454
                                            * **   *    *   *        ***  *   *   

consensus_8562#0      TATAATCGTAATATATGTAAGATATCTTAAATAC-TACTATTGTACGTTNATAGTAGCAT 774
consensus_8562#3      TATAATCGTAATATATGTAAGATATTTTAAAAAAGTAATATTGTACGTTTATAGTAGCAT 108
consensus_8562#1      CATCATGGAAACTTCTTCGACAC-TATGAAGTTCCTGAGAAGAT-TATCAACATTATCCA 579
consensus_8562#2      TATCATCGATGAACGAGGAGGATCCGATGCAGATGTGAAGGTATGGATTGGCANAGCAAG 514
                       ** ** *             *             *       *   *    *       

consensus_8562#0      TGAACCATCTA-GTAAAG------------------- 791
consensus_8562#3      TGAAACATGTAAGTAAAGATATTGGGCAAGAAACAAT 145
consensus_8562#1      GAACTCATATGACGGACTAC----------------- 599
consensus_8562#2      GTCAGCAT----------------------------- 522
                           ***