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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1052 fasta sequence
[ATGCTTATATTTATAAAATATGGATTGTTCGCATACCTTTCGAAAAGAATATAATAAAGCACGAGAATTTTGATTGTCAAATAAAAGTATGAAGTGAAACAGATAAACCTATATATATATAAATATATATATATATGGAAATAAAAGCATCAGTATTGTTCGTCTTAAAAGTTAACATAAATGTTGTTATGATTACAATAAATTTGTAAAGAAAAATGCAAATAAAGATGGTATGATAGATACATGATCATACCTATTTTTAATTTTTATAACATACATTGACTTGACGTTTATCGTTCAGAAAACACATTATTATTATTAATAGTTAATTCAAACAAAGTCGAATCATTGTAAAACACCAAATCGTAACAGACTGAGGTCACAAATAATTTATACCTACCTACCTACCTATCAATAAACGATATTAATTTCGATAATAACATTAATTATTAATACTAATGATAATTTTGATAGATGACAATAATGATTAAAAATATACTCATATGGATTCTTNNNCACTCGGATAATGGAAAAGAAATAAAAACGACAGCATTGATAAAATCAAAATATTTAGTACAAAACAAAAACAGTAGCAACGACAAGAACGAAGAGGAAACTCGAGAACTAGAAAAAAACAGTAGTAGCAGCAGCAGCGAAAACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCATCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCGTTCACCCAGGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAATATCCCATTCACGCCAATTCTGTCCTCGTGCCAAATTNTTGGC]
[+] EMBL CD073900 [ATGCTTATATTTATAAAATATGGATTGTTCGCATACCTTTCGAAAAGAATATAATAAAGCACGAGAATTTTGATTGTCAAATAAAAGTATGAAGTGAAACAGATAAACCTATATATATATAAATATATATATATATGGAAATAAAAGCATCAGTATTGTTCGTCTTAAAAGTTAACATAAATGTTGTTATGATTACAATAAATTTGTAAAGAAAAATGCAAATAAAGATGGTATGATAGATACATGATCATACCTATTTTTAATTTTTATAACATACATTGACTTGACGTTTATCGTTCAGAAAACACATTATTATTATTAATAGTTAATTCAAACAAAGTCGAATCATTGTAAAACACCAAATCGTAACAGACTGAGGTCACAAATAATTTATACCTACCTACCTACCTATCAATAAACGATATTAATTTCGATAATAACATTAATTATTAATACTAATGATAATTTTGATAGATGACAATAATGATTAAAAATATACTCATATGGATTCTTNNNCACTCGGATAATGG ]
[-] EMBL CD079638 [ AAAACAACAATTCGTAACAGACTGAGGTCACAAATAATTTATACCTACCTACCTACCTATCAATAAACGATATTAATTTCGATAATAACATTAATTATTAATACTAATGATAATTTTGATAGATGACAATAATGATTAAAAATATACTCATATGGATTCTTTTTCACTCGGATAATGGAAAAGAAATAAAAACGACAGCATTGATAAAATCAAAATATTTAGTACAAAACAAAAACAGTAGCAACGACAAGAACGAAGAGGAAACTCGAGAACTAGAAAAAAACAGTAGTAGCAGCAGCAGCGAAAACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCATCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCGTTCACCCAGGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAATATCCCATTCACGCCAATTCTGTCCTCGTGCCAAATTNTTGGC]
consensusID : consensus_8586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 981 fasta sequence
[TAATATAAATAGGATGTTGATCCCTTGAAAGAATTAATAAGCCGAGATTTGATTGTCAATAAAGTATAAGTAAACAGATAAACCTTTTTTTTTATAATATTATATATGGAATAAAAGCATCAGTATGTTCGTCTTAAAGTTTAACATAAATGTTGTTATGATTACAATAATTTGGTAAAGAAAAATGCAAATAAAGATGGTATGATAGATACATGATCATACNTATTTTTTCATATTATAACATACATTGACTTGACGTTATTCGTTCAGANAACACATTATTATTATTAATAGTTAATTCAAACAAAGTCGAATCATTGTAAAACAACAAAATCGTAACAGACTGAGGTCACAAATAATTTATACCTACCTACCTANCCTATCAATAAACGATATTAATTTCGATAATAACATTAATTATTAATACTAATGATAATTTTGATAGATGACAATAATGATTAAAAATATACTCATATGGATTCTTTTTCACTCGGATAATGGAAAAGAAATAAAAACGACAGCATTGATAAAATCAAAATATTTAGTACAAAACAAAAACAGTAGCAACGACAAGAACGAAGAGGAAACTCGAGAACTAGAAAAAAACAGTAGTAGCAGCAGCAGCGAAAACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCATCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCGTTCACCCAGGCCTAATGTGGACCCTCGGCCGAATTNTTGGCCTGGAGG]
[-] EMBL CD080199 [TAATATAAATAGGATGTTGATCCCTTGAAAGAATTAATAAGCCGAGATTTGATTGTCAATAAAGTATAAGTAAACAGATAAACCTTTTTTTTTATAATATTATATATGGAATAAAAGCATCAGTATGTTCGTCTTAAAGTTTAACATAAATGTTGTTATGATTACAATAATTTGGTAAAGAAAAATGCAAATAAAGATGGTATGATAGATACATGATCATACNTATTTTTTCATATTATAACATACATTGACTTGACGTTATTCGTTCAGANAACACATTATTATTATTAATAGTTAATTCAAACAAAGTCGAATCATTGTAAAACAACAAAATCGTAACAGACTGAGGTCACAAATAATTTATACCTACCTACCTANCCTATCAATAAACGATATTAATTTCGATAATAACATTAATTATTAATACTAATGATAATTTTGATAGATGACAATAATGATTAAAAATATACTCATATGGATTCTTTTTCACTCGGATAATGGAAAAGAAATAAAAACGACAGCATTGATAAAATCAAAATATTTAGTACAAAACAAAAACAGTAGCAACGACAAGAACGAAGAGGAAACTCGAGAACTAGAAAAAAACAGTAGTAGCAGCAGCAGCGAAAACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCATCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCGTTCACCCAGGCCTAATGTGGACCCTCGGCCGAATTNTTGGCCTGGAGG]
consensusID : consensus_8586#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 737 fasta sequence
[GAACTAGAAAAAAACAGTAGTAGCAGCAGCGAAAACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCATCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCG-TTCACCCA-GGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAAT-ATCCCATTCACGCCAATTCTCTTCCCAATTTTGACGTTCTAATTCAAATGCACGTC-GAGCAGCTTCTTGTTCTAATTCTTGGGCTTTTAATTGTTCTCTCATTTGTTCTACACGTCGCATTAAATCAGATTCTAGTTCACGAAGTTTCTGATTTTTTTCTTCAACTTTCTGGTCGAATACAGCTTCCATTTCTGCTTCCATTTTACGCATTTTGGCTTCATGTTCTTTTTTCTCAGCTTCCATAAGGGCCATTGGATCTTTACCATCACGTGTTTGGAAGTGGCTCTCCAAAGCAATGCCTGAAAGTTTGGCATTGCGATAATTTTCATAATGAACATTATGAGTCACATC]
[+] EMBL CD196426 [GAACTAGAAAAAAACAGTAGTAGCAGCAGCGAAAACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCATCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACAT TTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCG TTCACCCA GGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAAT ATCCCATTCACGCCAATTCTCTTCCCAATTTTGACGTTCTAATTCAAATGCACGTC GAGCAGCTTCTTGTTCTAATTCTTGGGCTTTTAATTGTTCTCTCATTTGTTCTAC ]
[+] EMBL CD140719 [ CTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCG TTCACCCA GGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAAT ATCCCATTCACGCCAATTCTCTTCCCAATTTTGACGTTCTAATTCAAATGCACGTC GAGCAGCTTCTTGTTCTAATTCTTGGGCTTTTAATTGTTCTCTCATTTGTTCTACACGTCGCATTAAATCAGATTCTAGTTCACGAAGTTTCTGATT ]
[+] EMBL CD140880 [ CTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCGTAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCCATTAGGGAACAAAGTAGACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATTAGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAACTCG TTCACCCA GGCCTAATGTTGGACCATTTGTTCCAATCCCTGCACCAAT ATCCCATTCACGCCAATTCTCTTCCCAATTTTGACGTTCTAATTCAAATGCACGTC GAGCAGCTTCTTGTTCTAATTCTTGGGCTTTTAATTGTTCTCTCATTTGTTCTACACGTCGCATTAAATCAG ]
[-] EMBL BF936660 [ TTCATAACTCGTTTCACCCAGGGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAATAATCCCATTCACGCCATATCTCTTCCCAATTTTGACGTTCTAATTCAAATGCACGTCGGAG AGCTTCTTGTTCTAATTCTTGGGCTTTTAATTGTTCTCTCATTTGTTCTACACGTCGCATTAAATCAGATTCTAGTTCACGAAGTTTCTGATTTTTTTCTTCAACTTTCTGGTCGAATACAGCTTCCATTTCTGCTTCCATTTTACGCATTTTGGCTTCATGTTCTTTTTTCTCAGCTTCCATAAGGGCCATTGGATCTTTACCATCACGTGTTTGGAAGTGGCTCTCCAAAGCAATGCCTGAAAGTTTGGCATTGCGATAATTTTCATAATGAACATTATGAGTCACATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8586#0 ATGCTTATATTTATAAAATATGGATTGTTCGCATACCTTTCGAAAAGAATATAATAAAGC 60
consensus_8586#1 ---------------TAATATAAATAGGATGTTGATCCCTTGAAA-GAAT-TAATAAGCC 43
consensus_8586#2 ------------------------------------------------------------
consensus_8586#0 ACGAGAATTTTGATTGTCAAATAAAAGTATGAAGTGAAACAGATAAACCTATATATATAT 120
consensus_8586#1 ----GAGATTTGATTGTCAAT--AAAGTAT-AAGT-AAACAGATAAACCTTTTTTTTTAT 95
consensus_8586#2 ------------------------------------------------------------
consensus_8586#0 AAATATATATATATATGGAAATAAAAGCATCAGTATTGTTCGTCTTAAAAGTTAACATAA 180
consensus_8586#1 AA-TAT---TATATATGGAA-TAAAAGCATCAGTAT-GTTCGTCTTAAAGTTTAACATAA 149
consensus_8586#2 ------------------------------------------------------------
consensus_8586#0 ATGTTGTTATGATTACAATAAATTTGTAAAGAAAAATGCAAATAAAGATGGTATGATAGA 240
consensus_8586#1 ATGTTGTTATGATTACAATAATTTGGTAAAGAAAAATGCAAATAAAGATGGTATGATAGA 209
consensus_8586#2 ------------------------------------------------------------
consensus_8586#0 TACATGATCATACCTATTTTTAATTTTTATAACATACATTGACTTGACGTTTATCGTTCA 300
consensus_8586#1 TACATGATCATACNTATTTTTTCATATTATAACATACATTGACTTGACGTTATTCGTTCA 269
consensus_8586#2 ------------------------------------------------------------
consensus_8586#0 GAAAACACATTATTATTATTAATAGTTAATTCAAACAAAGTCGAATCATTGTAAAACACC 360
consensus_8586#1 GANAACACATTATTATTATTAATAGTTAATTCAAACAAAGTCGAATCATTGTAAAACAAC 329
consensus_8586#2 ------------------------------------------------------------
consensus_8586#0 AAA-TCGTAACAGACTGAGGTCACAAATAATTTATACCTACCTACCTACC-TATCAATAA 418
consensus_8586#1 AAAATCGTAACAGACTGAGGTCACAAATAATTTATACCTACCTACCTANCCTATCAATAA 389
consensus_8586#2 ------------------------------------------------------------
consensus_8586#0 ACGATATTAATTTCGATAATAACATTAATTATTAATACTAATGATAATTTTGATAGATGA 478
consensus_8586#1 ACGATATTAATTTCGATAATAACATTAATTATTAATACTAATGATAATTTTGATAGATGA 449
consensus_8586#2 ------------------------------------------------------------
consensus_8586#0 CAATAATGATTAAAAATATACTCATATGGATTCTTNNNCACTCGGATAATGGAAAAGAAA 538
consensus_8586#1 CAATAATGATTAAAAATATACTCATATGGATTCTTTTTCACTCGGATAATGGAAAAGAAA 509
consensus_8586#2 ------------------------------------------------------------
consensus_8586#0 TAAAAACGACAGCATTGATAAAATCAAAATATTTAGTACAAAACAAAAACAGTAGCAACG 598
consensus_8586#1 TAAAAACGACAGCATTGATAAAATCAAAATATTTAGTACAAAACAAAAACAGTAGCAACG 569
consensus_8586#2 ------------------------------------------------------------
consensus_8586#0 ACAAGAACGAAGAGGAAACTCGAGAACTAGAAAAAAACAGTAGTAGCAGCAGCAGCGAAA 658
consensus_8586#1 ACAAGAACGAAGAGGAAACTCGAGAACTAGAAAAAAACAGTAGTAGCAGCAGCAGCGAAA 629
consensus_8586#2 -----------------------GAACTAGAAAAAAACAGTAGTAGCAGCAGC---GAAA 34
****************************** ****
consensus_8586#0 ACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCA 718
consensus_8586#1 ACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCA 689
consensus_8586#2 ACAACAGCAACAATGAAGATAGAGAAAATTATCCAGTGATGTAAATGCAAATGAGGATCA 94
************************************************************
consensus_8586#0 TCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCG 778
consensus_8586#1 TCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCG 749
consensus_8586#2 TCAAAGAAACCTGATTTCATAACATTAAAGGAATTATTCTGAAGAAATGCACGAATACCG 154
************************************************************
consensus_8586#0 TAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCC 838
consensus_8586#1 TAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCC 809
consensus_8586#2 TAAATAGTGAACTGATACTATAATTGATTTGGCTTAGCAATAGTGAAGAAATATAATCCC 214
************************************************************
consensus_8586#0 ATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATT 898
consensus_8586#1 ATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATT 869
consensus_8586#2 ATTAGGGAACAAAATAAACCTATTATTTCACCAGTTCAAGGACATATTTTTTAGGAAATT 274
************************************************************
consensus_8586#0 AGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAA 958
consensus_8586#1 AGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAA 929
consensus_8586#2 AGAAAAGACCTTTCTTTTTCTTTTCAGTTTTTACACGTTCTTTAATTACCTCATTCATAA 334
************************************************************
consensus_8586#0 CTCGTTCACCCAGGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAATATCCCATT 1018
consensus_8586#1 CTCGTTCACCCAGGCCTAATGT-GGACC-CTCGGCCGAATTNTTGGCCTGGAGG------ 981
consensus_8586#2 CTCGTTCACCCAGGCCTAATGTTGGACCATTTGTTCCAATCTCTGCACCAATATCCCATT 394
********************** ***** * * * *** ** *
consensus_8586#0 CACGCCAATTCTGTCCTCGTGCCAAATTNTTGGC-------------------------- 1052
consensus_8586#1 ------------------------------------------------------------
consensus_8586#2 CACGCCAATTCTCTTCCCAATTTTGACGTTCTAATTCAAATGCACGTCGAGCAGCTTCTT 454
consensus_8586#0 ------------------------------------------------------------
consensus_8586#1 ------------------------------------------------------------
consensus_8586#2 GTTCTAATTCTTGGGCTTTTAATTGTTCTCTCATTTGTTCTACACGTCGCATTAAATCAG 514
consensus_8586#0 ------------------------------------------------------------
consensus_8586#1 ------------------------------------------------------------
consensus_8586#2 ATTCTAGTTCACGAAGTTTCTGATTTTTTTCTTCAACTTTCTGGTCGAATACAGCTTCCA 574
consensus_8586#0 ------------------------------------------------------------
consensus_8586#1 ------------------------------------------------------------
consensus_8586#2 TTTCTGCTTCCATTTTACGCATTTTGGCTTCATGTTCTTTTTTCTCAGCTTCCATAAGGG 634
consensus_8586#0 ------------------------------------------------------------
consensus_8586#1 ------------------------------------------------------------
consensus_8586#2 CCATTGGATCTTTACCATCACGTGTTTGGAAGTGGCTCTCCAAAGCAATGCCTGAAAGTT 694
consensus_8586#0 -------------------------------------------
consensus_8586#1 -------------------------------------------
consensus_8586#2 TGGCATTGCGATAATTTTCATAATGAACATTATGAGTCACATC 737
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||