cluster # 8621

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Schistosoma mansoni
cluster # 8621 cluster # 8621 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8621#0 length = 972 sequences # 5

consensus_8621#1 length = 589 sequences # 1
consensus_8621#2 length = 319 sequences # 1

consensusID : consensus_8621#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 972
fasta sequence

                              [CCCTCGAGCCAANAATTCGGCACGAGGATTATCGGACTGTTTTAATATCACGCTCGCGTTATTTATGATTTTTGTCGATTGGTTTCCTTATCAAATATTTCGATGATGTTAAATTGATCACTAGAACTGGAAGTTAATTCTATTTGTTTCTTTTCCAGTCATAAATGAATCAGTCTCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCTCTCTGATAATGGAAATTTTGAATTCACACAGAAAAGCGTCGGTGCTGATGTTGAAATGGTTAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTGGAAGATGAAAGATGCTTTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCGTCTACCTGTGGAGGTGATGTCA-ACACATCATGCTATAGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCATTCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATTGGACAGAGAGAGTCAACAATCAGACGAAATACCTCTACTGAGTCCAACCAGTACTAAATTGTTGAAATCCAGTGATTCTAAAGGAGATGTTATTGTTTCGCGTTCACCTCTGATAAGTTGTAATCTACCATCCTCTACATCATTGTCTTCTGGAAGCAAAGAAAAAACATGAATTTCGCACTTCAGTGTTTGTATATCTGTGATTAGACATTAACACGTGTTTCTACCCTATTGTTCTCTATTGTGCATAATAAACACCT]

[+] EMBL CD080121             [CCCTCGAGCCAANAATTCGGCACGAGGATTATCGGACTGTTTTAATATCACGCTCGCGTTATTTATGATTTTTGTCGATTGGTTTCCTTATCAAATATTTCGATGATGTTAAATTGATCACTAGAACTGGAAGTTAATTCTATTTGTTTCTTTTCCAGTCATAAATGAATCAGTCTCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCTCTCTGATAATGGAAATTTTGAATTCACACAGAAAAGCGTCGGTGCTGATGTTGAAATGGTTAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTGGAAGATGAAAGATGCTTTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCGTCTACCTGTGGAGGTGATGTCA ACACATCATGCTATAGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCATTCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATTGGACAGA                                                                                                                                                                                                                                                             ]
[-] EMBL CD074874             [                                                                                                                                                                                                                                                                                                                                 TTACAGCTTACAATCCAAATGGATTTATTTTAAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTGGAAGATGAAAGATGCTTTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCGTCTACCTGTGGAGGTGATGTCA ACACATCATGCTATAGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCATTCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATTGGACAGAGAGAGTCAACAATCAGACGAAATACCTCTACTGAGTCCAACCAGTACTAAATTGTTGAAATCCAGTGATTCTAAAGGAGATGTTATTGTTTCGCGTTCACCTCTGATAAGTTGTAATCTACCATCCTCTACATCATTGTCTTCTGGAAGCAAAGAAAAAACATGAATTTCGCACTTCAGTGTTTGTATATCTGTGATTAGACATTAACACGTGTTTCTACCCTATTGTTCTCTATTGTGCATAATAAACACCT]
[-] EMBL CD201796             [                                                                                                                                                                                                                                                                                                                                                                                                        CCGCGGTTCGCTTTTAGTTGGAAGATGAAAGATGCTTTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCGTCTACCTGTGGAGGTGATGTCA ACACATCATGCTATAGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCATTCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATAAAAAAGCCACGCATTTACTATTGGACAGAGAGAGTCAACAATCAGACGAAATTCCTCTACTGAGTCCAACCAGTACTAAATTGTTGAAATCCAGTGATTCTAAAGGAGATGTTATTGTTTCGCGTTCACCTCTGATAAGTTGTAATCTACCATCCTCTACATCATTGTCTTCTGGAAGCAAAGAAAAAACATGAATTTCGCACTTCAGTGTTTGTATATCTGTGATTAGACATTAACACGTGTTTCTAC                                 ]
[+] EMBL CD125529             [                                                                                                                                                                                                                                                                                                                                                                                                             GTTCGCTTTTAGTTGGAAGATGAAAGATGCTTTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCGTCTACCTGTGGAGGTGATGTCA ACACATCATGCTATAGGAACTTTTAACTTTCTGAACTCAGAAAG                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD168340             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTACGTGTGGAGGTGATGTCACAC CATCATGCTATAGGAACTTTTAACTTTCTGAATTCAGAAAGACAATATGTTGCTGCAGCTGTCATTCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATTGGACAGAGAGAGTCAACAATCAGTCGAAATACCTCTACTGAGTCCAACCAGTACTAAATTGTTGAAATCCAGTGATTCTAAAGGAGATGTTATTGTTTCGCGTTCACCTCTGATAAGTTGTAATCTACCATCCTCTACATCATTGTCTTCTGGAAGCAAAGAAAAAACATGAATTTCGCACTTCAGTGTTTGTATATCTGTGATTAGACATTAACACGTGTTTCTACCCTATTGTTC                       ]




>consensus_8621#0
CCCTCGAGCCAANAATTCGGCACGAGGATTATCGGACTGTTTTAATATCACGCTCGCGTT
ATTTATGATTTTTGTCGATTGGTTTCCTTATCAAATATTTCGATGATGTTAAATTGATCA
CTAGAACTGGAAGTTAATTCTATTTGTTTCTTTTCCAGTCATAAATGAATCAGTCTCGTT
CTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCTCTCTG
ATAATGGAAATTTTGAATTCACACAGAAAAGCGTCGGTGCTGATGTTGAAATGGTTAACT
ATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAATACTG
GTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTGGAAGATGA
AAGATGCTTTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCAC
TTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATAC
TAAATATATGCTGGAAACATCGTCTACCTGTGGAGGTGATGTCAACACATCATGCTATAG
GAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCATTCCTCCAC
GTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATTGGACAGAG
AGAGTCAACAATCAGACGAAATACCTCTACTGAGTCCAACCAGTACTAAATTGTTGAAAT
CCAGTGATTCTAAAGGAGATGTTATTGTTTCGCGTTCACCTCTGATAAGTTGTAATCTAC
CATCCTCTACATCATTGTCTTCTGGAAGCAAAGAAAAAACATGAATTTCGCACTTCAGTG
TTTGTATATCTGTGATTAGACATTAACACGTGTTTCTACCCTATTGTTCTCTATTGTGCA
TAATAAACACCT

consensusID : consensus_8621#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence

                              [AGCGTCTTTGTGACAACCTTAAAACCTCACACANTTGTTTCGATTATGTTATTTATGATTTTTGTCGATTGGTTTCCTTATCAAATTCATAAATGAATCAGTCTCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCTCTCTGATAATGGTCGGTGCTGATGTTGAAATGGTTAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCGTCTACCTGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCATTCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATTGGACAGAGAGAGTCAACATCAGACGAAATACC]

[+] EMBL CD081047             [AGCGTCTTTGTGACAACCTTAAAACCTCACACANTTGTTTCGATTATGTTATTTATGATTTTTGTCGATTGGTTTCCTTATCAAATTCATAAATGAATCAGTCTCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCTCTCTGATAATGGTCGGTGCTGATGTTGAAATGGTTAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCGTCTACCTGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCATTCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATTGGACAGAGAGAGTCAACATCAGACGAAATACC]




>consensus_8621#1
AGCGTCTTTGTGACAACCTTAAAACCTCACACANTTGTTTCGATTATGTTATTTATGATT
TTTGTCGATTGGTTTCCTTATCAAATTCATAAATGAATCAGTCTCGTTCTGTTCTAAAAC
AGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCTCTCTGATAATGGTCGGT
GCTGATGTTGAAATGGTTAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCA
AATGGATTTATTTTAAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGG
TTCGTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAG
GTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAAT
ATATGCTGGAAACATCGTCTACCTGGAACTTTTAACTTTCTGAATTCAGAAAGACGATAT
GTTGCTGCAGCTGTCATTCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAA
GCCACGCATTTACTATTGGACAGAGAGAGTCAACATCAGACGAAATACC

consensusID : consensus_8621#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [TTACCATGTGGGAACTGGAAGTTAATTCTATTTGTTTCTTTTCCAGTCATAAATGAATCAGTCTCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCTCTCTGATAATGGAAATTTTGAATTCACACAGAAAAGCGTCGGTGCTGATGTTGAAATGGTTAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTGGAAGATGAAAGATGCTTTG]

[-] EMBL CD163458             [TTACCATGTGGGAACTGGAAGTTAATTCTATTTGTTTCTTTTCCAGTCATAAATGAATCAGTCTCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCTCTCTGATAATGGAAATTTTGAATTCACACAGAAAAGCGTCGGTGCTGATGTTGAAATGGTTAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTGGAAGATGAAAGATGCTTTG]




>consensus_8621#2
TTACCATGTGGGAACTGGAAGTTAATTCTATTTGTTTCTTTTCCAGTCATAAATGAATCA
GTCTCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGG
CCTCTCTGATAATGGAAATTTTGAATTCACACAGAAAAGCGTCGGTGCTGATGTTGAAAT
GGTTAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTT
AAATACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTG
GAAGATGAAAGATGCTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8621#0      CCCTCGAGCCAANAATTCGGCACGAGGATTATCGGACTGTTTTAATATCACGCTCGCGTT 60
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      ATTTATGATTTTTGTCGATTGGTTTCCTTATCAAATATTTCGATGATGTTAAATTGATCA 120
consensus_8621#2      ------------------------------------------------------TTACCA 6
consensus_8621#1      -----------------AGCGTCTTTGTGACAACCTTAAAACCTCACACANTTGTTTCGA 43
                                                                            *    *

consensus_8621#0      CT--AGAACTGGAAGTTAAT-TCTATTTGTTTCTTTTCCAG--TCATAAATGAATCAGTC 175
consensus_8621#2      TGTGGGAACTGGAAGTTAAT-TCTATTTGTTTCTTTTCCAG--TCATAAATGAATCAGTC 63
consensus_8621#1      TTATGTTATTTATGATTTTTGTCGATTGGTTTCCTTATCAAATTCATAAATGAATCAGTC 103
                             * *     **  * ** *** ***** **  **   *****************

consensus_8621#0      TCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCT 235
consensus_8621#2      TCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCT 123
consensus_8621#1      TCGTTCTGTTCTAAAACAGCTAAAATATTCTTCGTGTGTGCGTTATCTAGCAATAGGCCT 163
                      ************************************************************

consensus_8621#0      CTCTGATAATGGAAATTTTGAATTCACACAGAAAAGCGTCGGTGCTGATGTTGAAATGGT 295
consensus_8621#2      CTCTGATAATGGAAATTTTGAATTCACACAGAAAAGCGTCGGTGCTGATGTTGAAATGGT 183
consensus_8621#1      CTCTGATAATGG--------------------------TCGGTGCTGATGTTGAAATGGT 197
                      ************                          **********************

consensus_8621#0      TAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAA 355
consensus_8621#2      TAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAA 243
consensus_8621#1      TAACTATAATACACCTGGAATGTATTTTACAGCTTACAATCCAAATGGATTTATTTTAAA 257
                      ************************************************************

consensus_8621#0      TACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTGGAA 415
consensus_8621#2      TACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGCTTTTAGTTGGAA 303
consensus_8621#1      TACTGGTGTCAAGGTGATTGGACCATGTGCTGCTTTTCCGCGGTTCGTGAATATTTCGGA 317
                      ***********************************************    ** ** * *

consensus_8621#0      GATGAAAGATGCTTTGAATATTTCGGAGGAGTCTCTATCTTTGTTTTTCATTCTGGAGCC 475
consensus_8621#2      GATGAAAGATGCTTTG-------------------------------------------- 319
consensus_8621#1      GGAGTCTCTATCTTTGTTTTTCATTCTGGAGCCTCCACTTGAGGTTCTTATCATTGGTAA 377
                      *  *       *****                                            

consensus_8621#0      TCCACTTGAGGTTCTTATCATTGGTAAGGGAGAAACAAAAAGCCCAGTTGACTACCAACG 535
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      GGGAGAAACAAAAAGCCCAGTTGACTACCAACGAATACTAAATATATGCTGGAAACATCG 437
                                                                                  

consensus_8621#0      AATACTAAATATATGCTGGAAACATCGTCTACCTGTGGAGGTGATGTCAACACATCATGC 595
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      TCTACCTGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCAT 497
                                                                                  

consensus_8621#0      TATAGGAACTTTTAACTTTCTGAATTCAGAAAGACGATATGTTGCTGCAGCTGTCATTCC 655
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      TCCTCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATT 557
                                                                                  

consensus_8621#0      TCCACGTCGCCTTGATGTATATGATGAAGCTGATGAAAAAGCCACGCATTTACTATTGGA 715
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      GGACAGAGAGAGTCAACATCAGACGAAATACC---------------------------- 589
                                                                                  

consensus_8621#0      CAGAGAGAGTCAACAATCAGACGAAATACCTCTACTGAGTCCAACCAGTACTAAATTGTT 775
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      GAAATCCAGTGATTCTAAAGGAGATGTTATTGTTTCGCGTTCACCTCTGATAAGTTGTAA 835
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      TCTACCATCCTCTACATCATTGTCTTCTGGAAGCAAAGAAAAAACATGAATTTCGCACTT 895
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      CAGTGTTTGTATATCTGTGATTAGACATTAACACGTGTTTCTACCCTATTGTTCTCTATT 955
consensus_8621#2      ------------------------------------------------------------
consensus_8621#1      ------------------------------------------------------------
                                                                                  

consensus_8621#0      GTGCATAATAAACACCT 972
consensus_8621#2      -----------------
consensus_8621#1      -----------------