cluster # 8625

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Schistosoma mansoni
cluster # 8625 cluster # 8625 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8625#0 length = 764 sequences # 5

consensus_8625#1 length = 490 sequences # 1
consensus_8625#2 length = 254 sequences # 1

consensusID : consensus_8625#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 764
fasta sequence

                              [CTCCAGGCCAANAATTTGGCACGAGGGGCTGTCTTCGTCCAACTTATTTAGAGCGTATGCTTCTTTTACTTATTGCTAATCTAGTTAATTTCACCATAGCCGGTTATGGAATAGTCAAACGACCAAGAGATTTTTCTACTTTTTTATTGTCAATATTTATGATCAATTTATTGATGTACACATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCAAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGGGTTGTGCAACTTACTTTTATTTTCATCGAACAACCACATGGGAAGTGACTCCCGCTCGTTCTCGTGCACTTAATCAACCCTGTGTTTTATTGGATTTCTATGATGCACATGATGTTTGGCACTTTTTATCTTCAATATCTATGTTCTTCTCATTTATGTTAATAATGTACGTGGACGATGATCTCTCGAAACGTCCAAGAAATCAGATTTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTATATAATTATCCATGATCAGACAACTTTCATTCTAATCAACTACTTTATCATTTGTGACCCATTTTAGTGATTTCCTTTCCACTGATTTTGCTTTTCCATCTTCTGTGTTTTTAGTTTTTCTTCCACTTTTTTTATTCAAACTTTTTGTATAAAATGCCTTGAAGTGGATAAAAGAATCTACATATAACCATANA]

[+] EMBL CD081065             [CTCCAGGCCAANAATTTGGCACGAGGGGCTGTCTTCGTCCAACTTATTTAGAGCGTATGCTTCTTTTACTTATTGCTAATCTAGTTAATTTCACCATAGCCGGTTATGGAATAGTCAAACGACCAAGAGATTTTTCTACTTTTTTATTGTCAATATTTATGATCAATTTATTGATGTACACATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCAAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGGGTTGTGCAACTTACTTTTATTTTCATCGAACAACCACATGGGAAGTGACTCCCGCTCGTTCTCGTGCACTTAATCAACCCTGTGTTTTATTGGATTTCTATGATGCACATGATGTTTGGCACTTTTTATCTTCAATATCTATGTTCTTCTCATTTATGTTAATAATGTACGTGGACGATGATCTCTCGAAACGTCCAAGAAATCAGATTTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTATATAATTATCCATGATCAGACAACTTTCATTCTAATCAACTACTTTATCATTTGTGACCCATTTTAGTGATTTCCTTTCCACTGATTNTGCTTTTCCATCTTCTGTGTTTTTAGTTNTTCTTCCACTTTTTTTATTCAAACTTTNTGTATTAAATGCCTTGAAGTGGATAAAAGAATCTACATANTACCATAN ]
[-] EMBL CD074887             [                                                                                                                       CGACCAAGAGATTTTTCTAC TTTTTATTGTCAATATTTATGATCAATTTATTGATGTACACATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCAAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGGGTTGTGCAACTTACTTTTATTTTCATCGAACAACCACATGGGAAGTGACTCCCGCTCGTTCTCGTGCACTTAATCAACCCTGTGTTTTATTGGATTTCTATGATGCACATGATGTTTGGCACTTTTTATCTTCAATATCTATGTTCTTCTCATTTATGTTAATAATGTACGTGGACGATGATCTCTCGAAACGTCCAAGAAATCAGATTTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTATATAATTATCCATGATCAGACAACTTTCATTCTAATCAACTACTTTATCATTTGTGACCCATTTTAGTGATTTCCTTTCCACTGATTTTGCTTTTCCATCTTCTGTGTTTTTAGTTTTTCTTCCACTTTTTTTATTCAAACTTTTTGTATAAAATGCCTTGAAGTGGATAAAAGAATCTACATATAACCATAaa]
[-] EMBL CD136888             [                                                                                                                                    TTTCTACTTTTTTATTGTCAATATTTATGATCAATTTATTGATGTACACATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCAAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGGGTTGTGCAACTTACTTTTATTTTCATCGAACAACCACATGGGAAGTGACTCCCGCTCGTTCTCGTGCACTTAATCAACCCTGTGTTTTATTGGATTTCTATGATGCACATGATGTTTGGCACTTTTTATCTTCAATATCTATGTTCTTCTCATTTATGTTAATAATGTACGTGGACGATGATCTCTCGAAACGTCCAAGAAATCAGATTTTTGTTTTTTGATTACTAAC                                                                                                                                                                                                                                                                         ]
[-] EMBL CD077301             [                                                                                                                                                                                                   TTATGAAATTACGACATCGTGAACGCTTCCAAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGGGTTGTGCAACTTACTTTTATTTTCATCGAACAACCACATGGGAAGTGACTCCCGCTCGTTCTCGTGCACTTAATCAACCCTGTGTTTTATTGGATTTCTATGATGCACATGATGTTTGGCACTTTTTATCTTCAATATCTATGTTCTTCTCATTTATGTTAATAATGTACGTGGACGATGATCTCTCGAAACGTCCAAGAAATCAGATTTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTATATAATTATCCATGATCAGACAACTTTCATTCTAATCAACTACTTTATCATTTGTGACCCATTTTAGTGATTTCCTTTCCACTGATTTTGCTTTTCCATCTTCTGTGTTTTTAGTTTTTCTTCCACTTTTTTTATTCAAACTTTTTGTATAAAATGCCTTGAAGTGGATAAAAGAATCTGCATATAACCAT   ]
[-] EMBL CD134886             [                                                                                                                                                                                                                               CCAAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGGGTTGTGCAACTTACTTTTATTTTCATCGAACAACCACATGGGAAGTGACTCCCGCTCGTTCTCGTGCACTTAATCAACCCTGTGTTTTATTGGATTTCTATGATGCACATGATGTTTGGCACTTTTTATCTTCAATATCTATGTTCTTCTCATTTATGTTAATAATGTACGTGGACGATGATCTCTCGAAACGTCCAAGAAATCAGATTTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTATATAATTATCCATGATCAGACAACTTTCATTCTAATCAACTACTTTATCATTTGTGACCCATTTTAGTGATTTC                                                                                                                        ]




>consensus_8625#0
CTCCAGGCCAANAATTTGGCACGAGGGGCTGTCTTCGTCCAACTTATTTAGAGCGTATGC
TTCTTTTACTTATTGCTAATCTAGTTAATTTCACCATAGCCGGTTATGGAATAGTCAAAC
GACCAAGAGATTTTTCTACTTTTTTATTGTCAATATTTATGATCAATTTATTGATGTACA
CATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCAAATGTTATCGTTAG
TATATATTTTACTAACTTGCGTATCTTGGGGTTGTGCAACTTACTTTTATTTTCATCGAA
CAACCACATGGGAAGTGACTCCCGCTCGTTCTCGTGCACTTAATCAACCCTGTGTTTTAT
TGGATTTCTATGATGCACATGATGTTTGGCACTTTTTATCTTCAATATCTATGTTCTTCT
CATTTATGTTAATAATGTACGTGGACGATGATCTCTCGAAACGTCCAAGAAATCAGATTT
TTGTTTTTTGATCACTAACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGA
AATGAAAATATTCCACATTTGTAAACGCTATATAATTATCCATGATCAGACAACTTTCAT
TCTAATCAACTACTTTATCATTTGTGACCCATTTTAGTGATTTCCTTTCCACTGATTTTG
CTTTTCCATCTTCTGTGTTTTTAGTTTTTCTTCCACTTTTTTTATTCAAACTTTTTGTAT
AAAATGCCTTGAAGTGGATAAAAGAATCTACATATAACCATANA

consensusID : consensus_8625#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 490
fasta sequence

                              [CACGAGGAGACAAGACATCCTGATGTGAATGCTTCAGCACATTCAGCATATATGTTATGGCTGTAGTTATTTTCCTCGGTGTTCTTGGTGTTTTATATGGAAATCAGATTTTCTGGATTATATTCACTATCTTCTTCCTAATTTTGAGCGTTATATTAACCGTTGAGATTTATTATATGGGTCAGTGGAATATTGATTTATGCCTTCCAAGACGTATTTACTATTTAATTCGTACAGATGGGATTGGTTGTCTTCGTCCAACTTATTTAGAGCGTATGCTTCTTTTACTTATTGCTAATCTAGTTAATTTCACCATAGCCGGTTATGGAATAGTCAAACGACCAAGAGATTTTTCTACTTTTTTATTGTCAATATTTATGATCAATTTATTGATGTACACATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCCAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGCG]

[+] EMBL CD083483             [CACGAGGAGACAAGACATCCTGATGTGAATGCTTCAGCACATTCAGCATATATGTTATGGCTGTAGTTATTTTCCTCGGTGTTCTTGGTGTTTTATATGGAAATCAGATTTTCTGGATTATATTCACTATCTTCTTCCTAATTTTGAGCGTTATATTAACCGTTGAGATTTATTATATGGGTCAGTGGAATATTGATTTATGCCTTCCAAGACGTATTTACTATTTAATTCGTACAGATGGGATTGGTTGTCTTCGTCCAACTTATTTAGAGCGTATGCTTCTTTTACTTATTGCTAATCTAGTTAATTTCACCATAGCCGGTTATGGAATAGTCAAACGACCAAGAGATTTTTCTACTTTTTTATTGTCAATATTTATGATCAATTTATTGATGTACACATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCCAATGTTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGCG]




>consensus_8625#1
CACGAGGAGACAAGACATCCTGATGTGAATGCTTCAGCACATTCAGCATATATGTTATGG
CTGTAGTTATTTTCCTCGGTGTTCTTGGTGTTTTATATGGAAATCAGATTTTCTGGATTA
TATTCACTATCTTCTTCCTAATTTTGAGCGTTATATTAACCGTTGAGATTTATTATATGG
GTCAGTGGAATATTGATTTATGCCTTCCAAGACGTATTTACTATTTAATTCGTACAGATG
GGATTGGTTGTCTTCGTCCAACTTATTTAGAGCGTATGCTTCTTTTACTTATTGCTAATC
TAGTTAATTTCACCATAGCCGGTTATGGAATAGTCAAACGACCAAGAGATTTTTCTACTT
TTTTATTGTCAATATTTATGATCAATTTATTGATGTACACATTTTTCTATGCGATTATGA
AATTACGACATCGTGAACGCTTCCCAATGTTATCGTTAGTATATATTTTACTAACTTGCG
TATCTTGGCG

consensusID : consensus_8625#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence

                              [CCGCTGGTTCTCGTGCACTAATTCANCCCCTGTGTTTATGGNATTTCCTATGATGCACATGATGTTGGGCACTTTTTNATCTTCAAATATCTATGTTCTTCCTCATNTATGTNNAATAATGTACGTGNACGATGATCTCTCGAAACGTCCAAGAAATCAGATCTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTA]

[-] EMBL CD169591             [CCGCTGGTTCTCGTGCACTAATTCANCCCCTGTGTTTATGGNATTTCCTATGATGCACATGATGTTGGGCACTTTTTNATCTTCAAATATCTATGTTCTTCCTCATNTATGTNNAATAATGTACGTGNACGATGATCTCTCGAAACGTCCAAGAAATCAGATCTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTA]




>consensus_8625#2
CCGCTGGTTCTCGTGCACTAATTCANCCCCTGTGTTTATGGNATTTCCTATGATGCACAT
GATGTTGGGCACTTTTTNATCTTCAAATATCTATGTTCTTCCTCATNTATGTNNAATAAT
GTACGTGNACGATGATCTCTCGAAACGTCCAAGAAATCAGATCTTTGTTTTTTGATCACT
AACTACTGCAACTATGAATTTATTGTTCACAAATATGATTATGAAATGAAAATATTCCAC
ATTTGTAAACGCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8625#0      CTCCAGGCCAANAATTTGGCACGAGGGGCTGTCTTCGTCCAACTTATTTAGAGCGTATGC 60
consensus_8625#2      ------------------------------------------------------------
consensus_8625#1      ------------------------------------------------------------
                                                                                  

consensus_8625#0      TTCTTTTACTTATTGCTAATCTAGTTAATTTCACCATAGCCGGTTATGGAATAGTCAAAC 120
consensus_8625#2      ------------------------------------------------------------
consensus_8625#1      ------------------------------------------------------------
                                                                                  

consensus_8625#0      GACCAAGAGATTTTTCTACTTTTTTATTGTCAATATTTATGATCAATTTATTGATGTACA 180
consensus_8625#2      ------------------------------------------------------------
consensus_8625#1      -----------------------------CACGAGGAGACAAGACATCCTGATGTGAATG 31
                                                                                  

consensus_8625#0      CATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCAAATGTTATCGTTAG 240
consensus_8625#2      ------------------------------------------------------------
consensus_8625#1      CTTCAGCACATTCAGCATATATGTTATGGCTGTAGTTATTTTCCTCGGTGTTCTTGGTGT 91
                                                                                  

consensus_8625#0      TATATATTTTACTAACTTGCGTATCTTGGGGTTGTGCAACTTACTTTTATTTTCATCGAA 300
consensus_8625#2      ------------------------------------------------------------
consensus_8625#1      TTTATATGGAAATCAGATTTTCTGGATTATATTCACTATCTTCTTCCTAATTTTGAGCGT 151
                                                                                  

consensus_8625#0      CAACCACATGGGAAGTGACTCCCGC-TCGTTC--TCGTGCACTTAATCAACCCTG----- 352
consensus_8625#2      ---------------------CCGC-TGGTTC--TCGTGCACTAATTCANCCCCT----- 31
consensus_8625#1      TATATTAACCGTTGAGATTTATTATATGGGTCAGTGGAATATTGATTTATGCCTTCCAAG 211
                                                * * **  * *   * * * * *  **       

consensus_8625#0      TGTTTTATTGGATTTC-TATGATGCACATGATGTTTGGCACTTTTTA-----TCTTCAA- 405
consensus_8625#2      GTGTTTATGGNATTTCCTATGATGCACATGATGTTGGGCACTTTTTNA----TCTTCAAA 87
consensus_8625#1      ACGTATTTACTATTTAAT-TCGTACAGATGGGATTGGTTGTCTTCGTCCAACTTATTTAG 270
                         * * *   ****  * *  * ** ***   ** *     **        *  *  * 

consensus_8625#0      TATCTATGTTCTTC-TCATTTATGTTAA-TAATGTACGTGGACGATGATC--TCTCGAAA 461
consensus_8625#2      TATCTATGTTCTTCCTCATNTATGTNNAATAATGTACGTGNACGATGATC--TCTCGAAA 145
consensus_8625#1      AGCGTATGCTTCTTTTACTTATTGCTAATCTAGTTAATTTCACCATAGCCGGTTATGGAA 330
                          **** *  *  *  *   **   *   *  **  *  ** **   *  *   * **

consensus_8625#0      CGTCCAAGAAATCA---GATTTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTA 518
consensus_8625#2      CGTCCAAGAAATCA---GATCTTTGTTTTTTGATCACTAACTACTGCAACTATGAATTTA 202
consensus_8625#1      TAGTCAAACGACCAAGAGATTTTTCTACTTTT-TTATTGTCAATATTTATGATCAATTTA 389
                          ***   * **   *** *** *  ***  * * *  * *     *  ** ******

consensus_8625#0      TTGTT-CACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTATATAATT 577
consensus_8625#2      TTGTT-CACAAATATGATTATGAAATGAAAATATTCCACATTTGTAAACGCTA------- 254
consensus_8625#1      TTGATGTACACATTTTTCTATGCGATTATGAAATTACGACATCGTGAACGCTTCCCAATG 449
                      *** *  *** ** *   ****  ** *  * *** *    * ** ******        

consensus_8625#0      ATCCATGATCAGACAACTTTCATTCTAATCAACTACTTTATCATTTGTGACCCATTTTAG 637
consensus_8625#2      ------------------------------------------------------------
consensus_8625#1      TTATCGTTAGTATATATTTTACTAACTTGCGTATCTTGGCG------------------- 490
                                                                                  

consensus_8625#0      TGATTTCCTTTCCACTGATTTTGCTTTTCCATCTTCTGTGTTTTTAGTTTTTCTTCCACT 697
consensus_8625#2      ------------------------------------------------------------
consensus_8625#1      ------------------------------------------------------------
                                                                                  

consensus_8625#0      TTTTTTATTCAAACTTTTTGTATAAAATGCCTTGAAGTGGATAAAAGAATCTACATATAA 757
consensus_8625#2      ------------------------------------------------------------
consensus_8625#1      ------------------------------------------------------------
                                                                                  

consensus_8625#0      CCATANA 764
consensus_8625#2      -------
consensus_8625#1      -------