cluster # 8666

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Schistosoma mansoni
cluster # 8666 cluster # 8666 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8666#0 length = 889 sequences # 4

consensus_8666#1 length = 319 sequences # 1
consensus_8666#2 length = 163 sequences # 2

consensusID : consensus_8666#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 889
fasta sequence

                              [ACACGAGAAGAAGGTCTGCTAGCTTGATCCAATACTGATGTCTCAAAATCCAATGGTCTTGAAGTTTCTAATGGACTGCTTGCACCCATACGATTGACTGCTCGAACGCGGTAAGAATAAGAATAAACATTAGTCAGAGTACCTGGAAACGGAATCACTGCTGAAGTTGTCTCTCCTGAAACAGATAACACTGGTATCCATTCACTTGAGGTACTTTTCACTGGACCTCCACAACGTTCTATCACATATTCTGTGACAGGTAAACCACCTGTGTCACTGGGTGCATGCCATTTAAGTTGAATACCTTTTGAGTCCAAATGTGGTGTTGTATGTGTTGAGAATGATAACGGAGATTCAATCCTTTCTAGACTAGATGATGGCCTTCTTGAATATATTGGAGAATAGGTAGGTATTATATCAATTATTAAAGGTCCTCCAGGTTTTGAAGGTACATCATAAGGAGGAATGAACTGATAAAATAAGGTATCAGTTATAGGAATCGATGGGGCTGAATGACTTGGTCGAGTAGCAACGCGCAGTTCTACACGTTCACCTGGCTTTAGATTATCCAGTCTATATTCTATTGGACTTGAAATGGGTAATATTCCATCCAATAAATCTAGATATTTTGGAATTCCAATGGGCTTCCAGTCCGTTTCATGTGGGCGTCTCATTTCTAATCGATAATATGAAATTCTTTTTTGAACCTATTTACCAATTAACGCTTCTGTAGGTTTCCATTGAACCCGTATTGCATCTGGTCCTTCTGGTAAAACAATCAATGGCTCAGCTGAAATGAATGGTAAAGAACTTCTTGAAGAGAGCCTTCCCGTGCTTACAGGTTCCGACAACTTTATTGTATCTAAAGTAGACATAATTGGTCCTATTT]

[+] EMBL CD093858             [ACACGAGAAGAAGGTCTGCTAGCTTGATCCAATACTGATGTCTCAAAATCCAATGGTCTTGAAGTTTCTAATGGACTGCTTGCACCCATACGATTGACTGCTCGAACGCGGTAAGAATAAGAATAAACATTAGTCAGAGTACCTGGAAACGGAATCACTGCTGAAGTTGTCTCTCCTGAAACAGATAACACTGGTATCCATTCACTTGAGGTACTTTTCACTGGACCTCCACAACGTTCTATCACATATTCTGTGACAGGTAAACCACCTGTGTCACTGGGTGCATGCCATTTAAGTTGAATACCTTTTGAGTCCAAATGTGGTGTTGTATGTGTTGAGAATGATAACGGAGATTCAATCCTTTCTAGACTAGATGATGGCCTTCTTGAATATATTGGAGAATAGGTAGGTATTATATCAATTATTAAAGGTCCTCCAGGTTTTGAAGGTACATCATAAGGAGGAATGAACTGATAAAATAAG                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD068096             [                               ATAC GATGTCTCAAAATCCAATGGTC TGAAG TTCTAATGGACTGCTTGCACCCATACGATTGACTGCTCGAACGCGGTAAGAATAAGAATAAACATTAGTCAGAGTACCTGGAAACGGAATCACTGCTGAAGTTGTCTCTCCTGAAACAGATAACACTGGTATCCATTCACTTGAGGTACTTTTCACTGGACCTCCACAACGTTCTATCACATATTCTGTGACAGGTAAACCACCTGTGTCACTGGGTGCATGCCATTTAAGTTGAATACCTTTTGAGTCCAAATGTGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD127846             [                                                                                                                                                                                                                                                                                                                                                                                                                                     TTATTAAAGGTCCTCCAGGTTTTGAAGGTACATCATAAGGAGGAATGAACTGATAAAATAAGGTATCAGTTATAGGAATCGATGGGGCTGAATGACTTGGTCGAGTAGCAACGCGCAGTTCTACACGTTCACCTGGCTTTAGATTATCCAGTCTATATTCTATTGGACTTGAAATGGGTAATATTCCATCCAATAAATCTAGATATTTTGGAATTCCAATGGGCTTCCAGTCCGTTTCATGTGGGCGTCTCATTTCTAATCGATAATATGAAATTCTTTTTTGAACCT                                                                                                                                                                                    ]
[-] EMBL CD188727             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TCCAGTCTATATTCTATTGGACTTGAAATGGGTAATATTCCATCCAATAAATCTAGATATTTTGGAATTCCAATGGGCTTCCAGTCCATTTCATGTGGGCGTCTCATTTCTAATCGATAATCTGAAATTCTTTTTTGAGGCAATTTACCAATTAACGCTTCTGTAGGTTTCCATTGAACCCGTATTGCATCTGGTCCTTCTGGTAAAACAATCAATGGCTCAGCTGAAATGAATGGTAAAGAACTTCTTGAAGAGAGCCTTCCCGTGCTTACAGGTTCCGACAACTTTATTGTATCTAAAGTAGACATAATTGGTCCTATTT]




>consensus_8666#0
ACACGAGAAGAAGGTCTGCTAGCTTGATCCAATACTGATGTCTCAAAATCCAATGGTCTT
GAAGTTTCTAATGGACTGCTTGCACCCATACGATTGACTGCTCGAACGCGGTAAGAATAA
GAATAAACATTAGTCAGAGTACCTGGAAACGGAATCACTGCTGAAGTTGTCTCTCCTGAA
ACAGATAACACTGGTATCCATTCACTTGAGGTACTTTTCACTGGACCTCCACAACGTTCT
ATCACATATTCTGTGACAGGTAAACCACCTGTGTCACTGGGTGCATGCCATTTAAGTTGA
ATACCTTTTGAGTCCAAATGTGGTGTTGTATGTGTTGAGAATGATAACGGAGATTCAATC
CTTTCTAGACTAGATGATGGCCTTCTTGAATATATTGGAGAATAGGTAGGTATTATATCA
ATTATTAAAGGTCCTCCAGGTTTTGAAGGTACATCATAAGGAGGAATGAACTGATAAAAT
AAGGTATCAGTTATAGGAATCGATGGGGCTGAATGACTTGGTCGAGTAGCAACGCGCAGT
TCTACACGTTCACCTGGCTTTAGATTATCCAGTCTATATTCTATTGGACTTGAAATGGGT
AATATTCCATCCAATAAATCTAGATATTTTGGAATTCCAATGGGCTTCCAGTCCGTTTCA
TGTGGGCGTCTCATTTCTAATCGATAATATGAAATTCTTTTTTGAACCTATTTACCAATT
AACGCTTCTGTAGGTTTCCATTGAACCCGTATTGCATCTGGTCCTTCTGGTAAAACAATC
AATGGCTCAGCTGAAATGAATGGTAAAGAACTTCTTGAAGAGAGCCTTCCCGTGCTTACA
GGTTCCGACAACTTTATTGTATCTAAAGTAGACATAATTGGTCCTATTT

consensusID : consensus_8666#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [GGATCGAGATCCTCCTATAGTCGCCAGTTTGAGGCCCACATACAATATCCCAATGTCTGTCTCTNGTAGTAGATAGCCGACCAAGTAGCGCGCAGTTGTCCTGACCTCTTCTTCTAGCCAATTAACGCTTCTGTAGGTTTCCATTGAACCCGTATTGCATCTGGTCCTTCTGGTAAATCAATCAATGGCTCAGCTGAAATGAATGGTAAAGAACTTCTTGAAGAGAGCCTTCCCGTGCTTACAGGTTCCGACAACTTTATTGTATCTAAAGTAGACATAATTGGTCCTATTTGAATACCACGGACAGGCGCCACACCAA]

[-] EMBL CD072337             [GGATCGAGATCCTCCTATAGTCGCCAGTTTGAGGCCCACATACAATATCCCAATGTCTGTCTCTNGTAGTAGATAGCCGACCAAGTAGCGCGCAGTTGTCCTGACCTCTTCTTCTAGCCAATTAACGCTTCTGTAGGTTTCCATTGAACCCGTATTGCATCTGGTCCTTCTGGTAAATCAATCAATGGCTCAGCTGAAATGAATGGTAAAGAACTTCTTGAAGAGAGCCTTCCCGTGCTTACAGGTTCCGACAACTTTATTGTATCTAAAGTAGACATAATTGGTCCTATTTGAATACCACGGACAGGCGCCACACCAA]




>consensus_8666#1
GGATCGAGATCCTCCTATAGTCGCCAGTTTGAGGCCCACATACAATATCCCAATGTCTGT
CTCTNGTAGTAGATAGCCGACCAAGTAGCGCGCAGTTGTCCTGACCTCTTCTTCTAGCCA
ATTAACGCTTCTGTAGGTTTCCATTGAACCCGTATTGCATCTGGTCCTTCTGGTAAATCA
ATCAATGGCTCAGCTGAAATGAATGGTAAAGAACTTCTTGAAGAGAGCCTTCCCGTGCTT
ACAGGTTCCGACAACTTTATTGTATCTAAAGTAGACATAATTGGTCCTATTTGAATACCA
CGGACAGGCGCCACACCAA

consensusID : consensus_8666#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 163
fasta sequence

                              [CTCTTAACAGATGATGTAGGTCCAGTTAGAGGTTATGTTGTTGAGGCTAGAAGAAGAGGTCAGGAAAACTGGGCGCTACTTGGTCGGCTATCTACTACAAGAGACAGACATTGGAATATTGTATTTGGTCCTCAAACTGGTGATTATAGTAGGATCTCAATCC]

[+] EMBL CD195281             [CTCTTAACAGATGATGTAGGTCCAGTTAGAGGTTATGTTGTTGAGGCTAGAAGAAGAGGTCAGGAAAACTGGGCGCTACTTGGTCGGCTATCTACTACAAGAGACAGACATTGGAATATTGTATTTGGTCCTCAAACTGGTGATTATAGTAGGATCTCA    ]
[-] EMBL CD071687             [                                                                   ACTGGGCGCTACTTGGTCGGCTATCTACTACAAGAGACAGACATTGGAATATTGTATTTGGTCCTCAAACTGGTGATTATAGTAGGATCTCAATCC]




>consensus_8666#2
CTCTTAACAGATGATGTAGGTCCAGTTAGAGGTTATGTTGTTGAGGCTAGAAGAAGAGGT
CAGGAAAACTGGGCGCTACTTGGTCGGCTATCTACTACAAGAGACAGACATTGGAATATT
GTATTTGGTCCTCAAACTGGTGATTATAGTAGGATCTCAATCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8666#0      ACACGAGAAGAAGGTCTGCTAGCTTGATCCAATACTGATGTCTCAAAATCCAATGGTCTT 60
consensus_8666#1      ------------------------------------------------------------
consensus_8666#2      ------------------------------------------------------------
                                                                                  

consensus_8666#0      GAAGTTTCTAATGGACTGCTTGCACCCATACGATTGACTGCTCGAACGCGGTAAGAATAA 120
consensus_8666#1      ------------------------------------------------------------
consensus_8666#2      ------------------------------------------------------------
                                                                                  

consensus_8666#0      GAATAAACATTAGTCAGAGTACCTGGAAACGGAATCACTGCTGAAGTTGTCTCTCCTGAA 180
consensus_8666#1      ------------------------------------------------------------
consensus_8666#2      ------------------------------------------------------------
                                                                                  

consensus_8666#0      ACAGATAACACTGGTATCCATTCACTTGAGGTACTTTTCACTGGACCTCCACAACGTTCT 240
consensus_8666#1      ------------------------------------------------------------
consensus_8666#2      ------------------------------------------------------------
                                                                                  

consensus_8666#0      ATCACATATTCTGTGACAGGTAAACCACCTGTGTCACTGGGTGCATGCCATTTAAGTTGA 300
consensus_8666#1      ------------------------------------------------------------
consensus_8666#2      ------------------------------------------------------------
                                                                                  

consensus_8666#0      ATACCTTTTGAGTCCAAATGTGGTGTTGTATGTGTTGAGAATGATAACGGAGATTCAATC 360
consensus_8666#1      ------------------------------------------------------------
consensus_8666#2      ------------------------------------------------------------
                                                                                  

consensus_8666#0      CTTTCTAGACTAGATGATGGCCTTCTTGAATATATTGGAGAATAGGTAGGTATTATATCA 420
consensus_8666#1      ------------------------------------------------------------
consensus_8666#2      ------------------------------------------------------------
                                                                                  

consensus_8666#0      ATTATTAAAGGTCCTCCAGGTTTTGAAGGTACATCATAAGGAGGAATGAACTGATAAAAT 480
consensus_8666#1      ------------------------------------------------------------
consensus_8666#2      ------------------------------------------------------------
                                                                                  

consensus_8666#0      AAGGTATCAGTTATAGGAATCGATGGGGCTGAATGACTTGGTCGAGTAGCAACGCGCAGT 540
consensus_8666#1      ------------------------------------------------------------
consensus_8666#2      ------------------------------------------------------------
                                                                                  

consensus_8666#0      TCTACACGTTCACCTGGCTTTAGATTATCCAGTCTATATTCTATTGGACTTGAAATGGGT 600
consensus_8666#1      --------------------------------------------------------GGAT 4
consensus_8666#2      ------------------------------------------------------------
                                                                                  

consensus_8666#0      AATATTCCATCCAATAAATCTAGATATTTTGGAATTCCAATGGGCTTCCAGTCCGTTTCA 660
consensus_8666#1      CGAGATCC-TCCTATAG---TCGCCAGTTTGAGGCCCACATACAATATCCCAATGTCTGT 60
consensus_8666#2      ------------------------------------------------------------
                                                                                  

consensus_8666#0      TGTGGGCGTCTCATTTCTAATCGA-TAATATGAAATTCTTTTTTGAACCTATTT--ACCA 717
consensus_8666#1      CTCTNGTAGTAGATAGCCGACCAAGTAGCGCGCAGTTGTCCTGACCTCTTCTTCTAGCCA 120
consensus_8666#2      ----------------------------------------------------------CT 2
                                                                                * 

consensus_8666#0      ATTAAC-GCTTCTGTAGGTTTCCATTGAACCCGTATTGCATCTGGTCCTTCTGGTAAAAC 776
consensus_8666#1      ATTAAC-GCTTCTGTAGGTTTCCATTGAACCCGTATTGCATCTGGTCCTTCTGGTAAATC 179
consensus_8666#2      CTTAACAGATGATGTAGGTCCAGTTAGAGGTTATGTTG---TTGAGGCTAGAAGAAGAGG 59
                       ***** * *  *******     * **     * ***    **   **    * * *  

consensus_8666#0      AATCAATGGCTCAGC-TGAAATGAATGGTAAAGAACTTCTTGAAGAGAGCCTTCCCGTGC 835
consensus_8666#1      AATCAATGGCTCAGC-TGAAATGAATGGTAAAGAACTTCTTGAAGAGAGCCTTCCCGTGC 238
consensus_8666#2      TCAGGAAAACTGGGCGCTACTTGGTCGGCTATCTACTACAAGAGACAGACATTGGAATAT 119
                           *   **  **   *  **   **  *   *** *  **      * **    *  

consensus_8666#0      T-TACAGGTTCCGACAACTTTATTGTATCTAAAGTAGACATAATTGGTCCTATTT----- 889
consensus_8666#1      T-TACAGGTTCCGACAACTTTATTGTATCTAAAGTAGACATAATTGGTCCTATTTGAATA 297
consensus_8666#2      TGTATTTGGTCCTCAAACTG----GTGATTATAGTAGGATC--TCAATCC---------- 163
                      * **   * ***   ****     **   ** *****      *   ***          

consensus_8666#0      ----------------------
consensus_8666#1      CCACGGACAGGCGCCACACCAA 319
consensus_8666#2      ----------------------