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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 750 fasta sequence
[CTCGAGGCCAAAAATTCGGCACGAGGAGGACCAGCATTCAAAGTTGCTTGGCAAGCCATTAAACCATTTTTACCACAGACAACAGTATCGAAAGTTTGTTTTATTAGAAGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGAAACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAAATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGATCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCCAAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTGCTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTTTGAAGAACACGAAAATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAG-AATTACCAAAAGAATTTATGATTCCTGAAAATGCAGAAAAGTTAACATAAATCCTTATAGTACATTAGAATATTCATATTCTGTTGATTCGTTTTCCTCCTTTTAATACACCTGTCATTTTATACCACTAAAAGATATATACCAAACCAATAAGAGATGAGTTCTCAGGGTCAGATAGTGGAACGTTTTTGGTAATATGGTACTCAAATTNGTATGTGTTTGGTTTATTTTTAANAANATTT]
[+] EMBL CD080097 [CTCGAGGCCAAAAATTCGGCACGAGGAGGACCAGCATTCAAAGTTGCTTGGCAAGCCATTAAACCATTTTTACCACAGACAACAGTATCGAAAGTTTGTTTTATTAGAAGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGAAACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAAATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGATCAACTATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCCAAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTGCTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTTTGAAGAACACGAAAATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAG AATTACCAAAAGAATTTATGATTCCTGAAAATGCAGAAAAGTTAACATAAATCCTTATAGTACATTAGAATATTCATATTCTGTTGATTCGTTTTCCTCCTTTTAATACACCTGTCATTTTATACCACTAAAAGATATATACCAAACCAAT AGAGATGAGTTCTCAGGGTCAGATAGTGGAACGTTTTTGGTAATATGGTACTCAAATTNGTATGTGTTTGGTTTATTTTTAANAANAT ]
[-] EMBL CD075856 [ AGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGAAACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAAATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGATCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCCAAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTGCTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTTTGAAGAACACGAAAATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAG AATTACCAAAAGAATTTATGATTCCTGAAAATGCAGAAAAGTTAACATAAATCCTTATAGTACATTAGAATATTCATATTCTGTTGATTCGTTTTCCTCCTTTTAATACACCTGTCATTTTATACCACTAAAAGATATATA CAAACCAATAAGAGATGAGTTCTCAGGGTCAGATAGTGGAACGTTTTTGGTAATATGGTACTCTAATT GTATGTGTTTGGTTTATTTTTAAAAAAAATT]
[-] EMBL CD076116 [ ACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGATCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCCAAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTGCTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTTTGAAGAACACGAAAATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAG AATTACCAAAAGAATTTATGATTCCTGAAAATGCAGAAAAGTTAACATAAATCCTTATAGTACATTAGAATATTCATATTCTGTTGATTCGTTTTCCTCCTTTTAATACACCTGTCATTTTATACCACTAAAAGATATATA CAAACCAATAAGAGATGAGTTCTCAGGGTCAGAAAGTGGAACGTTTTTGGT ATATGGTct ]
[+] EMBL SMAA69054 [ AAATGATGCTGATGAAGAAGAAATTACT AAAAGCTTGCTGCAGAAATTACCAAAAGAATTTATGATTCCTGAAAATGCAGAAAAGTTAACATAAATCCTTATAGTACATTAGAATATTCATATACTGTTGATTCGTTTNNCTCCTTTTAATACACCTGTCATTTTATACCACTAAAAGATATATAC AACCAATAAGAGATGAGTTCTCAGGGTCA ]
consensusID : consensus_8675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 657 fasta sequence
[CTCGCAGGCCAGAATTCGGCACGAGGAGTCTGGGGTTACACAATGGGTTTTTGTGATCGATTGTACCGGCATGACTACAACCAGCTGTCATCCTCGTCTTGGTTACGAATGTGCCAAAATAATGGCTGATCATTATCCAGAGCGCCTTGGTTTAGCAATGTGTGTTCATCCAGGACCAGCATTCAAAGTTGCTTGGCAAGCCATTAAACCATTTTTACCACAGACAACAGTATCGAAAGTTTGTTTTATTAGAAGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGAAACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAAATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGATCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCCAAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTGCTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTNTGAAGAACACGANNATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAGAATT]
[+] EMBL CD082521 [CTCGCAGGCCAGAATTCGGCACGAGGAGTCTGGGGTTACACAATGGGTTTTTGTGATCGATTGTACCGGCATGACTACAACCAGCTGTCATCCTCGTCTTGGTTACGAATGTGCCAAAATAATGGCTGATCATTATCCAGAGCGCCTTGGTTTAGCAATGTGTGTTCATCCAGGACCAGCATTCAAAGTTGCTTGGCAAGCCATTAAACCATTTTTACCACAGACAACAGTATCGAAAGTTTGTTTTATTAGAAGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGAAACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAAATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGATCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCCAAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTGCTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTNTGAAGAACACGANNATGATGC ]
[+] EMBL CD082247 [ agacaTCTGGGGTTACACAATGGGTTTTTGTGATTGATTGTACCGGCATGACCACAACCAGCTGTCATCCTCGTCTTGGTTACGAATGTGCCAAAATAATGGCTGATCATTATCCAGAGCGCCTTGGTTTAGCAATGTGTGTTCATCCAGGACCAGCATTCAAAGTTGCTTGGCAAGCCATTAAACCATTTTTACCACAGACAACAGTATCGAAAGTTTGTTTTATTAGAAGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGAAACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAAATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGATCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCCAAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTGCTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTTTGAAGAACACGAAAATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAGAATT]
consensusID : consensus_8675#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence
[TAATGATCAGCCATTATTCAGGCACATTCGTAACCAAAACGAGGATGACAGCTGGTTGTAGTCATGCCGGTACAATCGATCACAAAAACCCATTGTGTAACCCCAGACTTCATACTTTTGATTGCATTTTCAGTTGTATATATCAAATGAGTTATTGCATCGTTTGACATATTGCTATTTGAAATAGCTTGAGAAAATGATGCATATATAATTGGACGCCCAGCTTCATCACATCCTATCT]
[+] EMBL CD068155 [TAATGATCAGCCATTATTCAGGCACATTCGTAACCAAAACGAGGATGACAGCTGGTTGTAGTCATGCCGGTACAATCGATCACAAAAACCCATTGTGTAACCCCAGACTTCATACTTTTGATTGCATTTTCAGTTGTATATATCAAATGAGTTATTGCATCGTTTGACATATTGCTATTTGAAATAGCTTGAGAAAATGATGCATATATAATTGGACGCCCAGCTTCATCACATCCTATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8675#0 ------------------------------------------------------------
consensus_8675#1 CTCGCAGGCCAGAATTCGGCACGAGGAGTCTGGGGTTACACAATGGGTTTTTGTGATCGA 60
consensus_8675#2 ------------------------------------------------------------
consensus_8675#0 ------------------------------------------------------------
consensus_8675#1 TTGTACCGGCATGACTACAACCAGCTGTCATCCTCGTCTTGGTTACGAATGTGCCAAAAT 120
consensus_8675#2 ------------------------------------------------------------
consensus_8675#0 ------------------------CTCGAGGCCAAAAATTCG-GCACGAGGAGGACCAGC 35
consensus_8675#1 AATGGCTGATCATTATCCAGAGCGCCTTGGTTTAGCAATGTGTGTTCATCCAGGACCAGC 180
consensus_8675#2 ------------------------------------------------------------
consensus_8675#0 ATTCAAAGTTGCTTGGCAAGCCATTAAACCATTTTTACCACAGACAACAGTATCGAAAGT 95
consensus_8675#1 ATTCAAAGTTGCTTGGCAAGCCATTAAACCATTTTTACCACAGACAACAGTATCGAAAGT 240
consensus_8675#2 ------------------------------------------------------------
consensus_8675#0 TTGTTTTATTAGAAGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGA 155
consensus_8675#1 TTGTTTTATTAGAAGTAAATCAAAAATATTTTCAACATTTGAACAATACTTTCCTCCAGA 300
consensus_8675#2 --------------------------------TAATGATCAGCCATTATTCAGGCACATT 28
** * ** ** * **
consensus_8675#0 AACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAA 215
consensus_8675#1 AACATGCAACTGGTTAATGACTGAAGTAAAATTCAATAGATCGAGACAGACAACAAACAA 360
consensus_8675#2 CGTAACCAAAACGAGGATGAC--AGCTGGTTGTAGTCATGCCGGTACAATCGATCA-CAA 85
* *** * ***** * * * * ** *** * * * ***
consensus_8675#0 ATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGA 275
consensus_8675#1 ATACCGACCATTTTGGTTACCTCCAAAAGATCCCGATGATAAACACGATCCTAGAGGTGA 420
consensus_8675#2 AAACCCATTGT----GTAACCCC--AGACTTCATACTTTTGATTGCATTTTCAGTTGT-A 138
* *** * * ** *** * * * ** * * * * * ** ** *
consensus_8675#0 TCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCC 335
consensus_8675#1 TCAAATATATGTTCGTGATTGGCTTGTATTAAATCATCCCACTCAACATTTACCACATCC 480
consensus_8675#2 TATATCAAATG--AGTTATTGCATCGTTTGACATATTGCTATTTGAAAT-----AGCTTG 191
* * * *** ** **** * ** * * ** * * * * * ** * *
consensus_8675#0 AAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTG 395
consensus_8675#1 AAATATTGTTGATTATATGCTTGGATGTTTGAATTCACTTCACTATGAAAATACATTGTG 540
consensus_8675#2 AGAAAATGATGCATATATAATTGGACGCCCAGCTTCATCACATCCTATCT---------- 241
* * * ** ** ***** ***** * **** ** *
consensus_8675#0 CTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTTTGA 455
consensus_8675#1 CTCTAGTCATCTGGTTGATAATACTTATGAGTTAACAGAAAAAGGATTTGATGATTNTGA 600
consensus_8675#2 ------------------------------------------------------------
consensus_8675#0 AGAACACGAAAATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAGAATTACC 515
consensus_8675#1 AGAACACGANNATGATGCTGATGAAGAAGAAATTACTAAAAAGCTTGCTGCAGAATT--- 657
consensus_8675#2 ------------------------------------------------------------
consensus_8675#0 AAAAGAATTTATGATTCCTGAAAATGCAGAAAAGTTAACATAAATCCTTATAGTACATTA 575
consensus_8675#1 ------------------------------------------------------------
consensus_8675#2 ------------------------------------------------------------
consensus_8675#0 GAATATTCATATTCTGTTGATTCGTTTTCCTCCTTTTAATACACCTGTCATTTTATACCA 635
consensus_8675#1 ------------------------------------------------------------
consensus_8675#2 ------------------------------------------------------------
consensus_8675#0 CTAAAAGATATATACCAAACCAATAAGAGATGAGTTCTCAGGGTCAGATAGTGGAACGTT 695
consensus_8675#1 ------------------------------------------------------------
consensus_8675#2 ------------------------------------------------------------
consensus_8675#0 TTTGGTAATATGGTACTCAAATTNGTATGTGTTTGGTTTATTTTTAANAANATTT 750
consensus_8675#1 -------------------------------------------------------
consensus_8675#2 -------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||