cluster # 8682

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Schistosoma mansoni
cluster # 8682 cluster # 8682 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8682#0 length = 542 sequences # 3

consensus_8682#1 length = 484 sequences # 3
consensus_8682#2 length = 197 sequences # 1

consensusID : consensus_8682#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 542
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTCCATTGAAAAGAAATGTCAACATTTTTTATAAAAAAACTGTTGTTTTTTAATTGAATAAGGGGGGAAAGGGTAAAAGCATTACAATAAACCTTACAAATATTTGTAAATTGAAAGCAATATAACCCAATACTGACACATATGTAAAATGTGTTACGTTTTCATGCCAACGTACATGCAAATCAAATCAAAGATTCTCAGGTATTTCTGTCCATAATAATTTAACAGGTAAATATAAACACATTGTATATCTAAATTAAATGATCAGAATATAAACTGAAGGAACAGGAAACGATGGTAGGTAACAATGACAATTGAAATACTAGAAACTAATACCAACTAGTGTCAATGTTGTATACTGAAGGTTTTCAATGTGTTTACTTCTTTCTGTATGTATGGTATGTATGTTTTCACTAACTAAATAGACAGTTTACATAATTTATTAGCAAAAGAAAGATAGTTTAACTGACAAAGAGTTTCATTTGATCATTTCTTTTCCTTTTTTTTCTAGACGAAATGTGAATC]

[+] EMBL AI395643             [TTTTTTTTTTTTTTTTTTTCCATTGAAAAGAAATGTCAACATTTTTTATAAAAAAACTGTTGTTTTTTAATTGAATAAGGGGGGAAAGGGTAAAAGCATTACAATAAACCTTACAAATATTTGTAAATTGAAAGCAATATAACCCAATACTGACACATATGTAAAATGTGTTACGTTTTCATGCCAACGTACATGCAAATCAAATCAAAGATTCTCAGGTATTTCTGTCCATAATAATTTAACAGGTAAATATAAACACATTGTATATCTAAATTAAATGATCAGAATATAAACTGAAGGAACAGGAAACGATGGTAGGTAACAATGACAATTGAAATACTAGAAACTAATACCACCTAGTGTCAATGTTGTATACTGAAGG TTTCAATGgggt                                                                                                                                                   ]
[+] EMBL CD163854             [                                                                                                                                                                   AAATGTGTTACGTTTTCATGCCAACGTACATGCAAATCAAATCAAAGATTCTCAGGTATTTCTGTCCATAATAATTTAACAGGTAAATATAAACACATTGTATATCTAAATTAAATGATCAGAATATAAACTGAAGGAACAGGAAACGATGGTAGGTAACAATGACAATTGAAATACTAGAAACTAATACCAACTAGTGTCAATGTTGTATACTGAAGGTTTTCAATGTGTTTACTTCTTTCTGTATGTATGGTATGTATGTTTTCACTAACTAAATAGACAGTTTACATAATTTATTAGCAAAAGAAAGATAGTTTAACTGACAAAGAGTTTCATTTGATCATTTCTTTTCCTTTTTTTTCTAGACGAAATGTGAATC]
[+] EMBL CD163923             [                                                                                                                                                                   AAATGTGTTACGTTTTCATGCCAACGTACATGCAAATCAAATCAAAGATTCTCAGGTATTTCTGTCCATAATAATTTAACAGGTAAATATAAACACATTGTATATCTAAATTAAATGATCAGAATATAAACTGAAGGAACAGGAAACGATGGTAGGTAACAATGACAATTGAAATACTAGAAACTAATACCAACTAGTGTCAATGTTGTATACTGAAGGTTTTCAATGTGTTTACTTCTTTCTGTATGTATGGTATGTATGTTTTCACTAACTAAATAGACAGTTTACATAATTTATTAGCAAAAGAAAGATAGTTTAACTAACAAAGAGTTTCATTTGATCATTTCTTTTCCTTTTTTTTCTAGACGAAATGT     ]




>consensus_8682#0
TTTTTTTTTTTTTTTTTTTCCATTGAAAAGAAATGTCAACATTTTTTATAAAAAAACTGT
TGTTTTTTAATTGAATAAGGGGGGAAAGGGTAAAAGCATTACAATAAACCTTACAAATAT
TTGTAAATTGAAAGCAATATAACCCAATACTGACACATATGTAAAATGTGTTACGTTTTC
ATGCCAACGTACATGCAAATCAAATCAAAGATTCTCAGGTATTTCTGTCCATAATAATTT
AACAGGTAAATATAAACACATTGTATATCTAAATTAAATGATCAGAATATAAACTGAAGG
AACAGGAAACGATGGTAGGTAACAATGACAATTGAAATACTAGAAACTAATACCAACTAG
TGTCAATGTTGTATACTGAAGGTTTTCAATGTGTTTACTTCTTTCTGTATGTATGGTATG
TATGTTTTCACTAACTAAATAGACAGTTTACATAATTTATTAGCAAAAGAAAGATAGTTT
AACTGACAAAGAGTTTCATTTGATCATTTCTTTTCCTTTTTTTTCTAGACGAAATGTGAA
TC

consensusID : consensus_8682#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 484
fasta sequence

                              [NCCAGAGGATCCCCCGATTGCGAAAAGGTAGGTAACAATGACAATTGAAATACTAGAAACTAATACCAACTAGTGTCAATGTTGTATACTGAAGGTTGTCAATGTGTTTACTTCTTTCTGTATGTATGGTATGTATGTTTTCACTAACTAAATAGACAGTTTACATAATTTATTAGCAAAAGAAAGATAGTTTAACTAACAAAGAGTTTCATTTGATCATTTCTTTTCCTTTTTTTTTCTAGACGAAATGTGAATCTAAAGTCTAGTTTAGTATAGAAATAAAAAATAAGCCATTAATGTTTACATCTATTTTCACTTGACTTTTATCAGAGGAAACAATCATACTCTTTATTTCTTTTGATATAGTAAGAAGAATGTAAGCACATACACAAACATAACAGAACAGAATAATAATTGAATAGGGTATATATATGAATGTGAACTATACTAAATGAATGGTTGATTGATTGTTTGAATACTTTCA]

[+] EMBL CD167106             [NCCAGAGGATCCCCCGATTGCGAAAAGGTAGGTAACAATGACAATTGAAATACTAGAAACTAATACCAACTAGTGTCAATGTTGTATACTGAAGGTTGTCAATGTGTTTACTTCTTTCTGTATGTATGGTATGTATGTTTTCACTAACTAAATAGACAGTTTACATAATTTATTAGCAAAAGAAAGATAGTTTAACTAACAAAGAGTTTCATTTGATCATTTCTTTTCCTTTTTTTTTCTAGACGAAATGTGAATCTAAAGTCTAGTTTAGTATAGAAATAAAAAATAAGCCATTAATGTTTACATCTATTTTCACTTGACTTTTATCAGAGGAAACAATCATACTCTTTATTTCTTTTGATATAGTAAGAAGAATGTAAGCACATACACAAACATAACAGAACAGAATAATAATTGAATAGGGTATATATATGAATGTGAACTATACTAAATGAATGGTT                       ]
[+] EMBL CD167137             [                                          AATTGAAATACTAGAAACTAATACCAACTAGTGTCAATGTTGTATACTGAAGGTTTTCAATGTGTTTACTTCTTTCTGTATGTATGGTATGTATGTTTTCACTAACTAAATAGACAGTTTACATAATTTATTAGCAAAAGAAAGATAGTTTAACTAACAAAGAGTTTCATTTGATCATTTCTTTTCCTTTTTTTTTCTAGACGAAATGTGAATCTAAAGTCTAGTTTAGTATAGAAATAAAAAATAAGCCATTAATGTTTACATCTATTTTCACTTGACTTTTATCAGAGGAAACAATCATACTCTTTATTTCTTTTGATATAGTAAGAAGAATGTAAGCACATAC                                                                                                ]
[+] EMBL AI395617             [                                                                                                                                                                                                                              tTTTTTTTTTTTTTTTCTAAACAAAAGGTGAATCTAAAGTCTAGTTTAGTATAGAAATAAAAAATAAGCCATTAATGTTTACATCTATTTTCACTTGACTTTTATCAGAGGAAACAATCATACTCTTTATTTCTTTTGATATAGTAAGAAGAATGTGAGCACATACACAAACATAACAGAACAGAATAATAATTGAATAGGGTATATATATGAATGTGAACTATACTAAATGAATGGGTGATTGATTGTTTGAATACTTTCA]




>consensus_8682#1
NCCAGAGGATCCCCCGATTGCGAAAAGGTAGGTAACAATGACAATTGAAATACTAGAAAC
TAATACCAACTAGTGTCAATGTTGTATACTGAAGGTTGTCAATGTGTTTACTTCTTTCTG
TATGTATGGTATGTATGTTTTCACTAACTAAATAGACAGTTTACATAATTTATTAGCAAA
AGAAAGATAGTTTAACTAACAAAGAGTTTCATTTGATCATTTCTTTTCCTTTTTTTTTCT
AGACGAAATGTGAATCTAAAGTCTAGTTTAGTATAGAAATAAAAAATAAGCCATTAATGT
TTACATCTATTTTCACTTGACTTTTATCAGAGGAAACAATCATACTCTTTATTTCTTTTG
ATATAGTAAGAAGAATGTAAGCACATACACAAACATAACAGAACAGAATAATAATTGAAT
AGGGTATATATATGAATGTGAACTATACTAAATGAATGGTTGATTGATTGTTTGAATACT
TTCA

consensusID : consensus_8682#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 197
fasta sequence

                              [TATAACTAAACTGATGTTATTTAATTGAATAAGGGGGGAAAGGGTAAGAGCATTACAATAAACCTTACATATATTTGTAAATTGAAAGCATTATAACCCAATACTGACACATATGTAAAATGTGATACGTTCTTATGCCAACGTACATGCAAATCAAATCAAAGATTCTCAGGTATTTGCTGTACATTATCATTTAA]

[+] EMBL AW017392             [TATAACTAAACTGATGTTATTTAATTGAATAAGGGGGGAAAGGGTAAGAGCATTACAATAAACCTTACATATATTTGTAAATTGAAAGCATTATAACCCAATACTGACACATATGTAAAATGTGATACGTTCTTATGCCAACGTACATGCAAATCAAATCAAAGATTCTCAGGTATTTGCTGTACATTATCATTTAA]




>consensus_8682#2
TATAACTAAACTGATGTTATTTAATTGAATAAGGGGGGAAAGGGTAAGAGCATTACAATA
AACCTTACATATATTTGTAAATTGAAAGCATTATAACCCAATACTGACACATATGTAAAA
TGTGATACGTTCTTATGCCAACGTACATGCAAATCAAATCAAAGATTCTCAGGTATTTGC
TGTACATTATCATTTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8682#0      ------------------------------------------------------------
consensus_8682#2      ------------------------------------------------------------
consensus_8682#1      NCCAGAGGATCCCCCGATTGCGAAAAGGTAGGTAACAATGACAATTGAAATACTAGAAAC 60
                                                                                  

consensus_8682#0      ------------------------------------TTTTTTTTTTTTTTTTTTTCCATT 24
consensus_8682#2      ------------------------------------------------------------
consensus_8682#1      TAATACCAACTAGTGTCAATGTTGTATACTGAAGGTTGTCAATGTGTTTACTTCTTTCTG 120
                                                                                  

consensus_8682#0      GAAAAGAAATGTCAACATTTTTTATAAAAAAACTGTTG--TTTTTTAATTGAATAAGGGG 82
consensus_8682#2      ----------------------TATAACTAAACTGATG--TTATTTAATTGAATAAGGGG 36
consensus_8682#1      TATGTATGGTATGTATGTTTTCACTAACTAAATAGACAGTTTACATAATTTATTAGCAAA 180
                                              ***  ***  *     **   ***** * **     

consensus_8682#0      GGAAAGGGTA----------AAAGCATTACAATAAACC-------TTACAAATATTTGTA 125
consensus_8682#2      GGAAAGGGTA----------AGAGCATTACAATAAACC-------TTACATATATTTGTA 79
consensus_8682#1      AGAAAGATAGTTTAACTAACAAAGAGTTTCATTTGATCATTTCTTTTCCTTTTTTTTTCT 240
                       *****              * **  ** ** *  * *       ** *   * ***   

consensus_8682#0      AATTGAAA---GCAATATAACCCAATACTGACACATATGTAAAATGTGTTACGTT----T 178
consensus_8682#2      AATTGAAA---GCATTATAACCCAATACTGACACATATGTAAAATGTGATACGTT----C 132
consensus_8682#1      AGACGAAATGTGAATCTAAAGTCTAGTTTAGTATAGAAATAAAAAATAAGCCATTAATGT 300
                      *   ****   * *    **  * *   *   * * *  *****  *    * **     

consensus_8682#0      TCATGCCAACGTACATGCAAATCAAATCAAAGATTCTCAG-GTATTT-CTGTCCATAATA 236
consensus_8682#2      TTATGCCAACGTACATGCAAATCAAATCAAAGATTCTCAG-GTATTTGCTGTACATTATC 191
consensus_8682#1      TTACATCTATTTTCACTTGACTTTTATCAGAGGAAACAATCATACTCTTTATTTCTTTTG 360
                      * *   * *  * **    * *   **** **      *   ** *   * *   *  * 

consensus_8682#0      ATTTAACAGGTAAATATAAACACATTGTATATCTAAATTAAATGATCAGAATATAAACTG 296
consensus_8682#2      ATTTAA------------------------------------------------------ 197
consensus_8682#1      ATATAGTAAGAAGAATGTAAGCACATACACAAACATAACAGAACAGAATAATAATTGAAT 420
                      ** **                                                       

consensus_8682#0      AAGGAACAGGAAACGATGGTAGGTAACAATGACAATTGAAATACTAGAAACTAATACCAA 356
consensus_8682#2      ------------------------------------------------------------
consensus_8682#1      AGGGTATATATATGAATGTGAACTATACTAAATGAATGGTTGATTGATTGTTTGAATACT 480
                                                                                  

consensus_8682#0      CTAGTGTCAATGTTGTATACTGAAGGTTTTCAATGTGTTTACTTCTTTCTGTATGTATGG 416
consensus_8682#2      ------------------------------------------------------------
consensus_8682#1      TTCA-------------------------------------------------------- 484
                                                                                  

consensus_8682#0      TATGTATGTTTTCACTAACTAAATAGACAGTTTACATAATTTATTAGCAAAAGAAAGATA 476
consensus_8682#2      ------------------------------------------------------------
consensus_8682#1      ------------------------------------------------------------
                                                                                  

consensus_8682#0      GTTTAACTGACAAAGAGTTTCATTTGATCATTTCTTTTCCTTTTTTTTCTAGACGAAATG 536
consensus_8682#2      ------------------------------------------------------------
consensus_8682#1      ------------------------------------------------------------
                                                                                  

consensus_8682#0      TGAATC 542
consensus_8682#2      ------
consensus_8682#1      ------