cluster # 8683

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Schistosoma mansoni
cluster # 8683 cluster # 8683 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8683#0 length = 599 sequences # 6

consensus_8683#1 length = 423 sequences # 1

consensusID : consensus_8683#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 599
fasta sequence

                              [AATTATCGGATGGTAACTGCCCTAACGACGGTGGAATAAGACTGTGTGGGAACCCACTATTTAGTCCTCCAGATCCAGAATTCATCAGTAATTGTTGCTGTTGCATAGTCTTAAAAAAGTCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATTTCGGGCCTTTAGACTCATCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCCACTGCTGCAGCAACCTGAGATTGATGCTCTTGAGATAAAAATGGGATAACTTGTACTAAGATAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAAGTTATCTCATAATACAGCAGGTAGTGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTTTCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTCATCTTTTATTTTGTCACAAGCTTCCGGAACAGAAAATTTTGTATGTTGGTTGCTTTGAGAAGAAGAAGAAATTCGCGAAGGATACATTAAAAGTGAGTAACGAACCAGCTACTATCCATGAAGAATGACC]

[+] EMBL CD132620             [AATTATCGGATGGTAACTGCCCTAACGACGGTGGAATAAGACTGTGTGGGAACCCACTATTTAGTCCTCCAGATCCAGAATTCATCAGTAATTGTTGCTGTTGCATAGTCTTAAAAAAGTCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATTTCGGGCCTTTAGACTCATCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCCACTGC                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD068237             [                                     AAGACTGTGTGGGAACCCACTATTTAGTCCTCCAGATCCAGAATTCATCAGTAATTGTTGCTGTTGCATAGTCTTAAAAAAGTCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATTTCGGGCCTTTAGACTCATCCAT      CCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCCACTGCTGCAGCAACCTGAGATTGATGCTCTTG                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD153187             [                                                                                                                AAAAAAGTCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATTTCGGGCCTTTAGACTCATCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCCACTGCTGCAGCAACCTGAGATTGATGCTCTTGAGATAAAAATGGGATAACTTGTACTAAGATAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAAGTTATCTCATAATACAGCAGGTAGTGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTTTCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTCATCTTTTATTTTGTCACAAGCTTCCGGAACAGAAAATTTTGTATGTTGGTTGCTTTGAGAAGAAGAAGAAATTCGCGAAGGATACATTANAAGTGAGTAACGAACCAGCTACTATCCATGAAGAATGAC ]
[+] EMBL CD153167             [                                                                                                                AAAAAAGTCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATTTCGGGCCTTTAGACTCATCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCCACTGCTGCAGCAACCTGAGATTGATGCTCTTGAGATAAAAATGGGATAACTTGTACTAAGATAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAAGTTATCTCATAATACAGCAGGTAGTGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTTTCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTCATCTTTTATTTTGTCACAAGCTTCCGGAACAGAAAATTTTGTATGTTGGTTGCTTTGAGAAGAAGAAGAAATTCGCGAAGGATACATTAAAAGTGAGTAACGAACCAGCTACTATCCATGAAGAATGAC ]
[-] EMBL CD153203             [                                                                                                                                                                                  ATCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTNTGCGCGGTCCACTGCTGCAGCAACCTGAGATTGATGCTCTTGAGATAAAAATGGGATAACTTGTACTAAGATAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAAGTTATCTCATAATACAGCAGGTAGTGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTTTCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTCATCTTTTATTTTGTTTCAAGCATCCGGGGCAGAAAATATTGTATGTTGGGTGCTTTGAGAAGAAGAAAAAATTTTCGAAGGATACATTTAAAGTGAGTAGCGGACCAGCTACTATCCATGAAGAATGACC]
[-] EMBL CD187502             [                                                                                                                                                                                                                                                             CTGAGATTGATGCTCTTGAGATAAAAATGGGATAACTTGTACTAAGATAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAAGTTATCTCTTAATACAGCAGGTAGTGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTTTCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTCATCTTTTATTTTGTCACAAGCTTCCGGAACAGAAAATTTTGTATGTTGGTTGCTTTGAGAAGAAGAAGAAATTCGCGAAGGATACATTAAAAGTGAGTAACGAACCAGCTACTATCCATG          ]




>consensus_8683#0
AATTATCGGATGGTAACTGCCCTAACGACGGTGGAATAAGACTGTGTGGGAACCCACTAT
TTAGTCCTCCAGATCCAGAATTCATCAGTAATTGTTGCTGTTGCATAGTCTTAAAAAAGT
CCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATTTCGGGCCTTTAGACTCAT
CCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCCA
CTGCTGCAGCAACCTGAGATTGATGCTCTTGAGATAAAAATGGGATAACTTGTACTAAGA
TAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAAG
TTATCTCATAATACAGCAGGTAGTGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTTT
CAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTCATCTTTTATTT
TGTCACAAGCTTCCGGAACAGAAAATTTTGTATGTTGGTTGCTTTGAGAAGAAGAAGAAA
TTCGCGAAGGATACATTAAAAGTGAGTAACGAACCAGCTACTATCCATGAAGAATGACC

consensusID : consensus_8683#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [AATAAGACTGTGTGGGANCNCACTATTAGTCCCTCCAGATCCAGAATTCATCAGTAATTGTGCTGTGNNCATAGTCTTAAAAAAGTCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATNTCGGGCCTNTAGACTCATCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCCACTGCTGCAGCAACCTCTTGAGATAAAAATGGGATAACTTGTACTAAGACAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAAGTTATCTCATAATACAGCAGGTAATGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTTTCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTC]

[-] EMBL CD165223             [AATAAGACTGTGTGGGANCNCACTATTAGTCCCTCCAGATCCAGAATTCATCAGTAATTGTGCTGTGNNCATAGTCTTAAAAAAGTCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATNTCGGGCCTNTAGACTCATCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCCACTGCTGCAGCAACCTCTTGAGATAAAAATGGGATAACTTGTACTAAGACAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAAGTTATCTCATAATACAGCAGGTAATGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTTTCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTC]




>consensus_8683#1
AATAAGACTGTGTGGGANCNCACTATTAGTCCCTCCAGATCCAGAATTCATCAGTAATTG
TGCTGTGNNCATAGTCTTAAAAAAGTCCATTTGGTCAAACGTGGATCCAAGAGAACCGTT
CAGGAATNTCGGGCCTNTAGACTCATCCATCTGTGGCCCTATGATACTACTAAGTTCCGA
TAGAGTAACTTGCTTTGCGCGGTCCACTGCTGCAGCAACCTCTTGAGATAAAAATGGGAT
AACTTGTACTAAGACAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGAC
ATTAAGTCCATAAGTTATCTCATAATACAGCAGGTAATGGCGCTGTAACTCGGACTTTTC
CTGAACTGCCTTTTCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAG
CTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8683#0      AATTATCGGATGGTAACTGCCCTAACGACGGTGGAATAAGACTGTGTGGGAACCCACTAT 60
consensus_8683#1      ----------------------------------AATAAGACTGTGTGGGANCNCACTAT 26
                                                        ***************** * ******

consensus_8683#0      TTAGTCCTCCAGATCCAGAATTCATCAGTAATTGTTGCTGT-TGCATAGTCTTAAAAAAG 119
consensus_8683#1      TAGTCCCTCCAGATCCAGAATTCATCAGTAATTGT-GCTGTGNNCATAGTCTTAAAAAAG 85
                      *    ****************************** *****   ****************

consensus_8683#0      TCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATTTCGGGCCTTTAGACTCA 179
consensus_8683#1      TCCATTTGGTCAAACGTGGATCCAAGAGAACCGTTCAGGAATNTCGGGCCTNTAGACTCA 145
                      ****************************************** ******** ********

consensus_8683#0      TCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCC 239
consensus_8683#1      TCCATCTGTGGCCCTATGATACTACTAAGTTCCGATAGAGTAACTTGCTTTGCGCGGTCC 205
                      ************************************************************

consensus_8683#0      ACTGCTGCAGCAACCTGAGATTGATGCTCTTGAGATAAAAATGGGATAACTTGTACTAAG 299
consensus_8683#1      ACTGCTGCAGCAACCT------------CTTGAGATAAAAATGGGATAACTTGTACTAAG 253
                      ****************            ********************************

consensus_8683#0      ATAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAA 359
consensus_8683#1      ACAGCATTAAGTCGTTTTGCGATCTCCATCTGTTTGTGCATTTCGACATTAAGTCCATAA 313
                      * **********************************************************

consensus_8683#0      GTTATCTCATAATACAGCAGGTAGTGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTT 419
consensus_8683#1      GTTATCTCATAATACAGCAGGTAATGGCGCTGTAACTCGGACTTTTCCTGAACTGCCTTT 373
                      *********************** ************************************

consensus_8683#0      TCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTCATCTTTTATT 479
consensus_8683#1      TCAAACTCACATTTTAAACTGTGGTACTGAGTTTGTAGGCCCAGAAGCTC---------- 423
                      **************************************************          

consensus_8683#0      TTGTCACAAGCTTCCGGAACAGAAAATTTTGTATGTTGGTTGCTTTGAGAAGAAGAAGAA 539
consensus_8683#1      ------------------------------------------------------------
                                                                                  

consensus_8683#0      ATTCGCGAAGGATACATTAAAAGTGAGTAACGAACCAGCTACTATCCATGAAGAATGACC 599
consensus_8683#1      ------------------------------------------------------------