cluster # 8708

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Schistosoma mansoni
cluster # 8708 cluster # 8708 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8708#0 length = 823 sequences # 6

consensus_8708#1 length = 363 sequences # 1

consensusID : consensus_8708#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 823
fasta sequence

                              [TCCGTGTAGTGACGATTGATTGAACGCAAGCCGAACTCAGACCACAGTAATTCCTTATTACTCAGGTCAGCTAACAAACGAGGGAGTCGTGGTGATGTAGGCGAAAGAACTTTCAAAAGAAATGGGAATAAATTTACATATCCAAACGAAGTGTCCACTAACTGCGGTGATGGGGTTTTCACAGCTACTCGTACCAATTTCATCTCATTAGAAACATGTGATCCCTTAGGTATATCAGGCATCTCCAGTCTAACAAAGTCTGTGTGCAGACCATAATCAGCATAGTGGCCCTGCTTTTCTGACCAATGAAGTTTATCCAGTTCACTTTGGTCTGATAAGAGATCAGCCCAACGGGTATATTCAACAATCAATGAACGAGTCTCTTCTAACTTTGATCGACTATTTGCATTTTGATCTGTCTGCAT-AAATTGTGTAACAACATAAGCCAATTTCGCCATTACACGAGCGAACAAAGTCATCCAACAACGTAAATCAATGTGACGTTCATCATCAGTTGGGTGAGAGGCACGAGGGAAATCATCTAATCCAGAACTCAATGTAAGAGGGTTCAGCTGATGAATTTCATTTGGGTTGCGACCGCGCCAACGATATGACAGAGGGACTGGACCAATCTGAGTAGTATTGAACCACTGATACCAAACATGTAGCCTTGGAAGAATTAAAATAGACCAACGACGAAATTCATTAGCTTCAGTGACAGTTAGTCGAGGCAAACGATCTAACAAAGCCTCAACAGTCAAAATCAAAGATGGTGGATTGGCAACCTCGGAGGATTGAACAACAAATTCGGATGGAACCTTCG]

[+] EMBL CD150599             [TCCGTGTAGTGACGATTGATTGAACGCAAGCCGAACTCAGACCACAGTAATTCCTTATTACTCAGGTCAGCTAACAAACGAGGGAGTCGTGGTGATGTAGGCGAAAGAACTTTCAAAAGAAATGGGAATAAATTTACATATCCAAACGAAGTGTCCACTAACTGCGGTGATGGGGTTTTCACAGCTACTCGTACCAATTTCATCTCATTAGAAACATGTGATCCCTTAGGTATATCAGGCATCTCCAGTCTAACAAAGTCTGTGTGCAGACCATAATCAGCATAGTGGCCCTGCTTTTCTGACCAATGAAGTTTATCCAGTTCACTTTGGTCTGATAAGAGATCAGCCCAACGGGTATATTCAACAATCAATGAACGAGTCTCTTCTAACTTTGATCGACTATTTGCATTTTGATCTGTCTGCATAAAATTGTGTAACAACATAAGCCAATTTCGCCATTACACGAGCGAACAAAGTCATCCAACAACGTAAATCAATGTGACGTTCATCATCAGTTGGGTGAGAGGC                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD064930             [                                                                                                                                                                           GGGGTTTTCACGGCTACTCGTGCCAATTTCATCTCATTAGAAACATGTGATCCCTTAGGTATATCAGGCATCTCCAGTCTAACAAAGTCTGTGTGCAGACCATAATCAGCATAGTGGCCCTGCTTTTCTGACCAATGAAGTTTATCCAGTTCACTTTGGTCTGATAAGAGATCAGCCCAACGGGTATATTCAACAATCAATGAACGAGTCTCTTCTAACTTTGATCGACTATTTGCATTTTGATCTGTCTGCAT AAATTGTGTAACAACATAAGCCAATTTCGCCATTACACGAGCGAACAAAGTCATCCAACAACGTAAATCAATGTGACGTTCATCATCAGTTGGGTGAGAGGCACGAGGGAAATCATCTAATCCAGAACTCAATGTAAGAGGGTTCAGCTGATGAATTTCATTTGGGTTGCGACCGCGCCAACGATATGACAGAGGGACTGGACCAATC                                                                                                                                                                                              ]
[+] EMBL CD142621             [                                                                                                                                                                                                             tATTAGAAACATGTGATCCCTTAGGTATATCAGGCATCTCCAGTCTAACAAAGTCTGTGTGCAGACCATAATCAGCATAGTGGCCCTGCTTTTCTGACCAATGAAGTTTATCCAGTTCACTTTGGTCTGATAAGAGATCAGCCCAACGGGTATATTCAACAATCAATGAACGAGTCTCTTCTAACTTTGATCGACTATTTGCATTTTGATCTGTCTGCAT AAATTGTGTAACAACATAAGCCAATTTCGCCATTACACGAGCGAACAAAGTCATCCAACAACGTAAATCAATGTGACGTTCATCATCAGTTGNGTGAGAGGCACGAGNGAAATCATC                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD130238             [                                                                                                                                                                                                                                                                                                                           TCCAGTTCACTTTGGTCTGATAAGAGATCAGCCCAACGGGTATATTCAACAATCAATGAACGAGTCTCTTCTAACTTTGATCGACTATTTGCATTTTGATCTGTCTGCAT AAATTGTGTAACAACATAAGCCAATTTCGCCATTACACGAGCGTACAAAGTCATCCAACAACGTAAATCAATGTGACGTTCATCATCAGTTGGGTGAGAGGCACGAGGGAAATCATCTAATCCAGAACTCAATGTAAGAGGGTTCAGCTGATGAATTTCATTTGNGTTGCGACCGCGCCAACGATATG                                                                                                                                                                                                                  ]
[-] EMBL CD112146             [                                                                                                                                                                                                                                                                                                                                 TCACTTTGGTCTGATAGGAGATCAGCCCAACGGGTATATTCAACAATCAATGAACGAGTCTCTTCTAACTTTGATCGACTATTTGCATTTTGATCTGTCTGCAT AAATTGTGTAACAACATAAGCCAATTTCGCCATTACACGAGCGAACAAAGTCATCCAACAACGTAAATCAATGTGACGTTCATCATCAGTTGGGTGAGAGGCACGAGGGAAATCATCTAATCCAGAACTCAATGTAAGAGGGTTCAGCTGATGAATTTCATTTGGGTTGCGACCGCGCCAACGATATGACAGAGGGACTGGACCAATCTGAGTAGTATTGAACCACTGATACCAAACATGTAGCCTTGGAAGAATTAAAATAGACCAACGACGAAATTCATTAGCTTCAGTGACAGTTAGTCGAGGCAAACGATCTAACAAAGCCTCAACAGTCAAAATCAAAGATGGTGGATTGGCAACCTCGGAGGATTGAACAACAAATTCGGATGGAACCTTCG]
[-] EMBL CD071717             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            aAACGATATGACAGAGGGACTGGACCAATCTGAGTAGTA TGAACCACTGATACCAAACATGTAGCCTTGGAAGAATTAAAATAGACCAACGACGAAATTCATTAGCTTCAGCGACAGTTAGTCGAGGCAAACGATCTAACAAAGCCTCAACAGTCAAAATCAAAGATGGTGGATTGGCAACCTCGGAGGATTGAACAACAAATTCGGATGGAACCTTCG]




>consensus_8708#0
TCCGTGTAGTGACGATTGATTGAACGCAAGCCGAACTCAGACCACAGTAATTCCTTATTA
CTCAGGTCAGCTAACAAACGAGGGAGTCGTGGTGATGTAGGCGAAAGAACTTTCAAAAGA
AATGGGAATAAATTTACATATCCAAACGAAGTGTCCACTAACTGCGGTGATGGGGTTTTC
ACAGCTACTCGTACCAATTTCATCTCATTAGAAACATGTGATCCCTTAGGTATATCAGGC
ATCTCCAGTCTAACAAAGTCTGTGTGCAGACCATAATCAGCATAGTGGCCCTGCTTTTCT
GACCAATGAAGTTTATCCAGTTCACTTTGGTCTGATAAGAGATCAGCCCAACGGGTATAT
TCAACAATCAATGAACGAGTCTCTTCTAACTTTGATCGACTATTTGCATTTTGATCTGTC
TGCATAAATTGTGTAACAACATAAGCCAATTTCGCCATTACACGAGCGAACAAAGTCATC
CAACAACGTAAATCAATGTGACGTTCATCATCAGTTGGGTGAGAGGCACGAGGGAAATCA
TCTAATCCAGAACTCAATGTAAGAGGGTTCAGCTGATGAATTTCATTTGGGTTGCGACCG
CGCCAACGATATGACAGAGGGACTGGACCAATCTGAGTAGTATTGAACCACTGATACCAA
ACATGTAGCCTTGGAAGAATTAAAATAGACCAACGACGAAATTCATTAGCTTCAGTGACA
GTTAGTCGAGGCAAACGATCTAACAAAGCCTCAACAGTCAAAATCAAAGATGGTGGATTG
GCAACCTCGGAGGATTGAACAACAAATTCGGATGGAACCTTCG

consensusID : consensus_8708#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [CTTAACTTTCCGCGTGGATTTTTATGGGATGAAGGATTTCATGGTTTGATATTGGCCCGATGGGATCCAAATCTTGCAATGGAAACAGTCGGTTCATGGCTCGATCTTATGAATGCTAATGGTTGGATTCCACGTGAACAGATTTTAGGCTGGGAGGCCAGATCGAAGGTTCCATCCGAATTTGTTGTTCAATCCTCCGAGGTTGCCAATCCACCATCTTTGATTTTGACTGTTGAGGTATGTTGTCAAGTTTTTAAACTTTTTAGTAGATCCATGAACATATTTCCATTTGCATCACGGTATATTTTATCACACGTAATTTGTATCACTAATAGTTGAAGCGAATATGCAGTTGTGTCATAG]

[+] EMBL CD117902             [CTTAACTTTCCGCGTGGATTTTTATGGGATGAAGGATTTCATGGTTTGATATTGGCCCGATGGGATCCAAATCTTGCAATGGAAACAGTCGGTTCATGGCTCGATCTTATGAATGCTAATGGTTGGATTCCACGTGAACAGATTTTAGGCTGGGAGGCCAGATCGAAGGTTCCATCCGAATTTGTTGTTCAATCCTCCGAGGTTGCCAATCCACCATCTTTGATTTTGACTGTTGAGGTATGTTGTCAAGTTTTTAAACTTTTTAGTAGATCCATGAACATATTTCCATTTGCATCACGGTATATTTTATCACACGTAATTTGTATCACTAATAGTTGAAGCGAATATGCAGTTGTGTCATAG]




>consensus_8708#1
CTTAACTTTCCGCGTGGATTTTTATGGGATGAAGGATTTCATGGTTTGATATTGGCCCGA
TGGGATCCAAATCTTGCAATGGAAACAGTCGGTTCATGGCTCGATCTTATGAATGCTAAT
GGTTGGATTCCACGTGAACAGATTTTAGGCTGGGAGGCCAGATCGAAGGTTCCATCCGAA
TTTGTTGTTCAATCCTCCGAGGTTGCCAATCCACCATCTTTGATTTTGACTGTTGAGGTA
TGTTGTCAAGTTTTTAAACTTTTTAGTAGATCCATGAACATATTTCCATTTGCATCACGG
TATATTTTATCACACGTAATTTGTATCACTAATAGTTGAAGCGAATATGCAGTTGTGTCA
TAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8708#0      TCCGTGTAGTGACGATTGATTGAACGCAAGCCGAACTCAGACCACAGTAATTCCTTATTA 60
consensus_8708#1      ------------------------------------------------------------
                                                                                  

consensus_8708#0      CTCAGGTCAGCTAACAAACGAGGGAGTCGTGGTGATGTAGGCGAAAGAACTTTCAAAAGA 120
consensus_8708#1      ------------------------------------------------------------
                                                                                  

consensus_8708#0      AATGGGAATAAATTTACATATCCAAACGAAGTGTCCACTAACTGCGGTGATGGGGTTTTC 180
consensus_8708#1      -----------------------------------------------------------C 1
                                                                                 *

consensus_8708#0      ACAGCTACTCGTACCAATTTCATCTCATTAGAAACATGTGATCCCTTAGGTATATCAGGC 240
consensus_8708#1      TTAACTTTCCGCGTGGATTTT-TATGGGATGAAGGATTTCATGGTTTG---ATATTGG-- 55
                        * **   **     ****  * *     ***  ** * **   **    ****  *  

consensus_8708#0      ATCTCCAGTCTAACAAAGTCTGTGTGCAGACCATAATCAGCATAGTGGCCCTGCTTTTCT 300
consensus_8708#1      --CCCGATGGGATCCAAATCT-TGCAATGGAAACAGTCGGT-TCATGGCTC-GATCTTAT 110
                        * * *    * * ** *** **    *   * * ** *  *  **** * * * ** *

consensus_8708#0      GACCAATGAAGTTT--ATCCAGTTCACTTTGGTCTGA---TAAGAGATCAGCCCAACGGG 355
consensus_8708#1      GAATGCTAATGGTTGGATTCCACGTGAACAGATTTTAGGCTGGGAGGCCAGATCGAAGGT 170
                      **    * * * **  ** *          * * * *   *  ***  ***  * * ** 

consensus_8708#0      TATATTCAACAATCAATGAACGAGTCTCTTCTAACTTTGATCGACTATTTGCATTTTGAT 415
consensus_8708#1      TCCATCCGA-ATTTGTTGTTCAATCCTCCGAGGTTGCCAATCCACCATCTTTGATTTTGA 229
                      *  ** * * * *   **  * *  ***           *** ** ** *    ***   

consensus_8708#0      CTGTCTGCATAAATTGTGTAACAACATAAGCCAATTTCGCCATTACACGAGCGAACAAAG 475
consensus_8708#1      CTGTTGAGGTATGTTGT-CAAGTTTTTAAACTT-TTTAGTAGATCCATGAACATATTTCC 287
                      ****     **  ****  **     *** *   *** *    * ** ** *  *     

consensus_8708#0      TCATCCAACAACGTAAATCAATGTGACGTTCATCATCAGT-TGGGTGAGAGGCACGAGGG 534
consensus_8708#1      ATTTGCATCACGGTATAT---TTTATCACACGTAATTTGTATCACTAATAGTTGAAGCGA 344
                         * ** **  *** **   * *  *   * * **  ** *   * * **       * 

consensus_8708#0      AAAT-CATCTAATCCAGAACTCAATGTAAGAGGGTTCAGCTGATGAATTTCATTTGGGTT 593
consensus_8708#1      ATATGCAGTTGTGTCATAG----------------------------------------- 363
                      * ** **  *    ** *                                          

consensus_8708#0      GCGACCGCGCCAACGATATGACAGAGGGACTGGACCAATCTGAGTAGTATTGAACCACTG 653
consensus_8708#1      ------------------------------------------------------------
                                                                                  

consensus_8708#0      ATACCAAACATGTAGCCTTGGAAGAATTAAAATAGACCAACGACGAAATTCATTAGCTTC 713
consensus_8708#1      ------------------------------------------------------------
                                                                                  

consensus_8708#0      AGTGACAGTTAGTCGAGGCAAACGATCTAACAAAGCCTCAACAGTCAAAATCAAAGATGG 773
consensus_8708#1      ------------------------------------------------------------
                                                                                  

consensus_8708#0      TGGATTGGCAACCTCGGAGGATTGAACAACAAATTCGGATGGAACCTTCG 823
consensus_8708#1      --------------------------------------------------