cluster # 8709

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Schistosoma mansoni
cluster # 8709 cluster # 8709 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8709#0 length = 932 sequences # 5

consensus_8709#1 length = 235 sequences # 2

consensusID : consensus_8709#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 932
fasta sequence

                              [TTAGCTGTTGATGCTTGTTAACGCGAGGAAATATGTTTCTAGCTGTTTTCTTTGCTTTGAGTATTTTACTTGAGTCTGGAACCTGCATTGAGTTCGTATTTCCATGTGGCCAACCAAAAATATACGTTGGATATTTATGGATTAACGCAACAGTTGTACATGTAATTCCAAGAATTCAGGCAGCGCCTGACGAACCCAACGATAATTAT------GTTTGTCGTTTCAAAATACATAGTCCCGAAAGCTCCCCATTTTATGTAGAGTTACTGGATCAAAAATATGGATTCGCTGAATTGCGTGTAGATCCAAAATTGTCATCTAATATCACAAAGACTTCATCATTTGTTTTGGAAATAGAAGCGAGCGACTGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTCCAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACTATTCAAATACTGCGATTTGTAGTTATCGTCTTGAGCCTGTTGATAGTCCGTTTTCTATTAATAACTATGGTGTTATACGTGTACGTGAAACACTTTTATCTCTTGCGCAAAGACCTTATTCACTTCGAGTTATTGCAGAGGATTGCAGTCGTCCAGTACCACATAGAACATCAGTCAGTGTAACAGTTGAACAAATTCTTATTGACTGCAAACCAGGCTGGAAAAATTTACCAAGTGATATTGAATTTCTTGGATCTGAAGAAAAACCTGAACGTTTATTTATGCATTCGAGTTTACACTTGGAGACATGTACTGGTCCATGTGCTAATCCATTTATAGAGGCTCGGTTGGAACTTAGAACGGCTGTAATTGGTCAGAATCTAGTTACAGCT]

[+] EMBL CD186042             [TTAGCTGTTGATGCTTGTTAACGCGAGGAAATATGTTTCTAGCTGTTTTCTTTGCTTTGAGTATTTTACTTGAGTCTGGAACCTGCATTGAGTTCGTATTTCCATGTGGCCAACCAAAAATATACGTTGGATATTTATGGATTAACGCAACAGTTGTACATGTAATTCCAAGAATTCAGGCAGCGCCTGACGAACCCAACGATAATTAT      GTTTGTCGTTTCAAAATACATAGTCCCGAAAGCTCCCCATTTTATGTAGAGTTACTGGATCAAAAATATGGATTCGCTGAATTGCGTGTAGATCCAAAATTGTCATCTAATATCACAAAGACTTCATCATTTGTTTTGGAAATAGAAGCGAGCGACTGTGACGAACATTCTCGTACAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AI977449             [ TAGCTGTTGATGCTTGTTAACGCGAGGAAATATGTTTCTAGCTGTTTTCTTTGCTTTGAGTATTTTACTTGAGTCTGGAACCTGCATTGAGTTCGTATTTCCATGTGGCCAACCAAAAATATACGTTGGATATTTATGGATTAACGCAACAGTTGTACATGTAATTCCAAGAATTCAGGCAGCGCCTGACGAACCCAACGATAATTATGGAAAAGTTTGTCGTTTCAAAATACATAGTCCCGAAAGCTCCCCATTTTATGTAGAGTTACTGGATCAAAAATATGGATTCGCTGAATTGCGTGTAGATCCAAAATTGTCATCTAATATCACAAAGACTTCATCATTTGTTTTGGAAATAGAAGCGAGCGACTGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AI977036             [ TAGCTGTTGATGCTTGTTAACGCGAGGAAATATGTTTCTAGCTGTTTTCTTTGCTTTGAGTATTTTACTTGAGTCTGGAACCTGCATTGAGTTCGTATTTCCATGTGGCCAACCAAAAATATACGTTGGATATTTATGGATTAACGCAACAGTTGTACATGTAATTCCAAGAATTCAGGCAGCGCCTGACGAACCCAACGATAATTAT      GTTTGTCGTTTCAAAATACATAGTCCCGAAAGCTCCCCATTTTATGTAGAGTTACTGGATCAAAAATATGGATTCGCTGAATTGCGTGTAGATCCAAAATTGTCATCTAATATAACAAAGACTTCATCATTTGTTTTGGAAATAGAAGCGAGCGACTGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD168099             [                                                                                                                                                                                                                                                                                                                                                                                   TGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTCCAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACTATTCAAATACTGCGATTTGTAGTTATCGTCTTGAGCCTGTTGATAGTCCGTTTTCTATTAATAACTATGGTGTTATACGTGTACGTGAAACACTTTTATCTCTTGCGCAAAGACCTTATTCACTTCGAGTTATTGCAGAGGATTGCAGTCGTCCAGTACCACATAGAACATCAGTCAGTGTAACAGTTGAACAAATTCTTATTGACTGCAAACCAGGCTGGAAAAATTTACCAAGTGATATTGAATTTCTTGGATCTGAAGAAAAACCTGAACGTTTATTTATGCATTCGAGTTTACACTTGGAGACATGTACTGGTCCATGTGCTAATCCATTTATAGAGGCTCGGTTGGAACTTAGAACGGCTGTAATTGGTCAGAATCTAGTTACAGC ]
[-] EMBL CD167897             [                                                                                                                                                                                                                                                                                                                                                                                    GTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTCCAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACTATTCAAATACTGCGATTTGTAGTTATCGTCTTGAGCCTGTTGATAGTCCGTTTTCTATTAATAACTATGGTGTTATACGTGTACGTGAAACACTTTTATCTCTTGCGCAAAGACCTTATTCACTTCGAGTTATTGCAGAGGATTGCAGTCGTCCAGTACCACATAGAACATCAGTCAGTGTAACAGTTGAACAAATTCTTATTGACTGCAAACCAGGCTGGAAAAATTTACCAAGTGATATTGAATTTCTTGGATCTGAAGAAAAACCTGAACGTTTATTTATGCATTCGAGTTTACACTTGGAGACATGTACTGGTCCATGTGCTAATCCATTTATAGAGGCTCGGTTGGAACTTAGATCGGCTGTAATTGGTCAGAATCTAGTTACAGCT]




>consensus_8709#0
TTAGCTGTTGATGCTTGTTAACGCGAGGAAATATGTTTCTAGCTGTTTTCTTTGCTTTGA
GTATTTTACTTGAGTCTGGAACCTGCATTGAGTTCGTATTTCCATGTGGCCAACCAAAAA
TATACGTTGGATATTTATGGATTAACGCAACAGTTGTACATGTAATTCCAAGAATTCAGG
CAGCGCCTGACGAACCCAACGATAATTATGTTTGTCGTTTCAAAATACATAGTCCCGAAA
GCTCCCCATTTTATGTAGAGTTACTGGATCAAAAATATGGATTCGCTGAATTGCGTGTAG
ATCCAAAATTGTCATCTAATATCACAAAGACTTCATCATTTGTTTTGGAAATAGAAGCGA
GCGACTGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAG
ATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTC
CAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACT
ATTCAAATACTGCGATTTGTAGTTATCGTCTTGAGCCTGTTGATAGTCCGTTTTCTATTA
ATAACTATGGTGTTATACGTGTACGTGAAACACTTTTATCTCTTGCGCAAAGACCTTATT
CACTTCGAGTTATTGCAGAGGATTGCAGTCGTCCAGTACCACATAGAACATCAGTCAGTG
TAACAGTTGAACAAATTCTTATTGACTGCAAACCAGGCTGGAAAAATTTACCAAGTGATA
TTGAATTTCTTGGATCTGAAGAAAAACCTGAACGTTTATTTATGCATTCGAGTTTACACT
TGGAGACATGTACTGGTCCATGTGCTAATCCATTTATAGAGGCTCGGTTGGAACTTAGAA
CGGCTGTAATTGGTCAGAATCTAGTTACAGCT

consensusID : consensus_8709#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 235
fasta sequence

                              [CCTCGGTCACCCTGGNCAAGGGTGGNAAATCAGGAAGCGAGCGACTGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTCCAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACTATTCAAATACTGCGA]

[+] EMBL CD168201             [CCTCGGTCACCCTGGNCAAGGGTGGNAAATCAGGAAGCGAGCGACTGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTCCAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACTATTCAAATACTGCGA]
[+] EMBL CD168228             [                                             TGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTCCAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACTATTCAAATACTGCGA]




>consensus_8709#1
CCTCGGTCACCCTGGNCAAGGGTGGNAAATCAGGAAGCGAGCGACTGTGACGAACATTCT
CGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAGATCGTCATGGACCTGTTTTT
GACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTCCAATCGGTAGTATAGTTGGT
CAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACTATTCAAATACTGCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8709#0      TTAGCTGTTGATGCTTGTTAACGCGAGGAAATATGTTTCTAGCTGTTTTCTTTGCTTTGA 60
consensus_8709#1      ------------------------------------------------------------
                                                                                  

consensus_8709#0      GTATTTTACTTGAGTCTGGAACCTGCATTGAGTTCGTATTTCCATGTGGCCAACCAAAAA 120
consensus_8709#1      ------------------------------------------------------------
                                                                                  

consensus_8709#0      TATACGTTGGATATTTATGGATTAACGCAACAGTTGTACATGTAATTCCAAGAATTCAGG 180
consensus_8709#1      ------------------------------------------------------------
                                                                                  

consensus_8709#0      CAGCGCCTGACGAACCCAACGATAATTATGTTTGTCGTTTCAAAATACATAGTCCCGAAA 240
consensus_8709#1      ------------------------------------------------------------
                                                                                  

consensus_8709#0      GCTCCCCATTTTATGTAGAGTTACTGGATCAAAAATATGGATTCGCTGAATTGCGTGTAG 300
consensus_8709#1      ------------------------------------------------------------
                                                                                  

consensus_8709#0      ATCCAAAATTGTCATCTAATATCACAAAGACTTCATCATTTGTTTTGGAAATAGAAGCGA 360
consensus_8709#1      ---------------CCTCGGTCAC-----CCTGGNCAAGGGTGGNAAATCAGGAAGCGA 40
                                     *     ****     * *   **   **     *    *******

consensus_8709#0      GCGACTGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAG 420
consensus_8709#1      GCGACTGTGACGAACATTCTCGTACAACTTCTAGAGTTCCCATTCGAGTACAAGTAATAG 100
                      ************************************************************

consensus_8709#0      ATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTC 480
consensus_8709#1      ATCGTCATGGACCTGTTTTTGACAAACCTCACTATAATTTTAAACTTGGTCAAAGAAGTC 160
                      ************************************************************

consensus_8709#0      CAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACT 540
consensus_8709#1      CAATCGGTAGTATAGTTGGTCAAATCCAAGCTATTGAAGAAGTAAATCAACCAAGCGACT 220
                      ************************************************************

consensus_8709#0      ATTCAAATACTGCGATTTGTAGTTATCGTCTTGAGCCTGTTGATAGTCCGTTTTCTATTA 600
consensus_8709#1      ATTCAAATACTGCGA--------------------------------------------- 235
                      ***************                                             

consensus_8709#0      ATAACTATGGTGTTATACGTGTACGTGAAACACTTTTATCTCTTGCGCAAAGACCTTATT 660
consensus_8709#1      ------------------------------------------------------------
                                                                                  

consensus_8709#0      CACTTCGAGTTATTGCAGAGGATTGCAGTCGTCCAGTACCACATAGAACATCAGTCAGTG 720
consensus_8709#1      ------------------------------------------------------------
                                                                                  

consensus_8709#0      TAACAGTTGAACAAATTCTTATTGACTGCAAACCAGGCTGGAAAAATTTACCAAGTGATA 780
consensus_8709#1      ------------------------------------------------------------
                                                                                  

consensus_8709#0      TTGAATTTCTTGGATCTGAAGAAAAACCTGAACGTTTATTTATGCATTCGAGTTTACACT 840
consensus_8709#1      ------------------------------------------------------------
                                                                                  

consensus_8709#0      TGGAGACATGTACTGGTCCATGTGCTAATCCATTTATAGAGGCTCGGTTGGAACTTAGAA 900
consensus_8709#1      ------------------------------------------------------------
                                                                                  

consensus_8709#0      CGGCTGTAATTGGTCAGAATCTAGTTACAGCT 932
consensus_8709#1      --------------------------------