cluster # 8759

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Schistosoma mansoni
cluster # 8759 cluster # 8759 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8759#0 length = 650 sequences # 2

consensus_8759#1 length = 473 sequences # 2
consensus_8759#2 length = 287 sequences # 3

consensusID : consensus_8759#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 650
fasta sequence

                              [GTAAATTATACTCGAATTAAGAATATTATACAATTGTTGGATTCATTTACTCAACTTATTTACTAGCACATACACAAAGTTTCTTAAAAAAGAAAAAGAAAAAAGAAAATTGGCTAGAATTAAAGCAACAAAGATGTAAAAAAATTTTAATATATGGCAACAACTCGAAAGTGAAAAATAAGCATTTCCTATTTGTTCACTTTAAACAAGAAAAAAAAGGACCTTTATTCTTAAATACCGAAAGTAGTCTACATTTACAAGAGAAAAAAACAAGTTGAGAAAATTAATAGAAACAATTTTAAAAACTTTCAATGAAAGTATAAGGGAAGGCATATATATGGGTGATTATTATGATGGACGCGCCTTGAACGGGTTTCCGCGGTTTAATTCTTTTTGGGGGGGGATTCAGAACAGTTAAATTTGGACCACTAGAATTTTACTCTTACCGATACACTTTCCATTTATACTTATTTGGGTTGCACAAAACTGTGCATAAGAGGAACCAACTCTTAAGANCTTGCGAACGGACGGTGTTTATACGATGGCCGTTGTGGAAAACTAATAAAACTCATTCCATTAAAAGTTTGAGAAGGGAACAAAGGTACTTTCGGGCACAATTATTATTGGGAGGGACTTTTTGAAAAAAAAAA]

[+] EMBL CD076927             [GTAAATTATACTCGAATTAAGAATATTATACAATTGTTGGATTCATTTACTCAACTTATTTACTAGCACATACACAAAGTTTCTTAAAAAAGAAAAAGAAAAAAGAAAATTGGCTAGAATTAAAGCAACAAAGATGTAAAAAAATTTTAATATATGGCAACAACTCGAAAGTGAAAAATAAGCATTTCCTATTTGTTCACTTTAAACAAGAAAAAAAAGGACCTTTATTCTTAAATACCGAAAGTAGTCTACATTTACAAGAGAAAAAAACAAGTTGAGAAAATTAATAGAAACAATTTTAAAAACTTTCAATGAAAGTATAAGGGAAGGCATATATATGGGTGATTATTATGATGGACGCGCCTTGAACGGGTTTCCGCGGTTTAATTCTTTTTGGGGGGGGATTCAGAACAGTTAAATTTGGACCACTAGAATTTTACTCTTACCGATACACTTTCCATTTATACTTATTTGGGTTGCACAAAACTGTGCATAAGAGGAACCAACTCTTAAGANCTTGCGAACGGACGGTGTTTATACGATGGCCGTTGTGGAAAACTAATAAAACTCATTCCATTAAAAGTTTGAGAAGGGAACAAAGGTACTTTCGGGCACAATTATTATTGGGAGGGACTTTTTGAAAAAAAAAA]
[+] EMBL AA999389             [GTAAATTATACTCGAATTAAGAATATTATACAATTGTTGGATTCATTTACTCAACTTATTTACTAGCACATACACAAAGTTTCTTAAAAAAGAAAAAGAAAAAAGAAAATTGGCTAGAATTAAAGCAACAAAGATGTAAAAAAATTTTAATATATGGCAACAACTCGAAAGTGAAAAATAAGCATTTCCTATTTGTTCACTTTAAACAAGAAAAAAAAGGACCTTTATTCTTAAATACCGAAAGTAGTCTACATTTACAAGAGAAAAAAACAAGTTGAGAAAATTTATAGAAACNATTTTAAAAACTTTCAATGAAAGTATA                                                                                                                                                                                                                                                                                                                                        ]




>consensus_8759#0
GTAAATTATACTCGAATTAAGAATATTATACAATTGTTGGATTCATTTACTCAACTTATT
TACTAGCACATACACAAAGTTTCTTAAAAAAGAAAAAGAAAAAAGAAAATTGGCTAGAAT
TAAAGCAACAAAGATGTAAAAAAATTTTAATATATGGCAACAACTCGAAAGTGAAAAATA
AGCATTTCCTATTTGTTCACTTTAAACAAGAAAAAAAAGGACCTTTATTCTTAAATACCG
AAAGTAGTCTACATTTACAAGAGAAAAAAACAAGTTGAGAAAATTAATAGAAACAATTTT
AAAAACTTTCAATGAAAGTATAAGGGAAGGCATATATATGGGTGATTATTATGATGGACG
CGCCTTGAACGGGTTTCCGCGGTTTAATTCTTTTTGGGGGGGGATTCAGAACAGTTAAAT
TTGGACCACTAGAATTTTACTCTTACCGATACACTTTCCATTTATACTTATTTGGGTTGC
ACAAAACTGTGCATAAGAGGAACCAACTCTTAAGANCTTGCGAACGGACGGTGTTTATAC
GATGGCCGTTGTGGAAAACTAATAAAACTCATTCCATTAAAAGTTTGAGAAGGGAACAAA
GGTACTTTCGGGCACAATTATTATTGGGAGGGACTTTTTGAAAAAAAAAA

consensusID : consensus_8759#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 473
fasta sequence

                              [GNNNTTNCCCAAAAGTGGANAGNTNTACTCGGAGNTAAGAANAGTATNCAANGTGGGTGGATTCANNTACTCAACNTATTTACTAGCACATACACAAAGTTTCTGAAAAAAGAAAAAGAAAAAAGAAAATTGGCTAGAATTAAAGCAACAAAGATGTAAAAAAATTTTAATATATGGCAACAACTCGAAAGTGAAAAATAAGCATTTCCTATTTGTTCACTTTAAACAAGAAAAAAAAGGACCTTTATTCTTAAATACCGAAAGTAGTCTACATTTACAAGAGAAAAAAACAAGTTGAGAAAATTAATAGAAACAATTTTAAAAACTTTCAATGAAAGTATAAGGAAGGTCATATATATGTGTAATTATTATGATGAACGCACTTTGATCGGTTTTCGTCGTTTTAATTCTTTTTGTTGTGGATTCTGATCAGTTTCAGTTTGATCACTAGTCTCTCNCTCGTGCCGNNTCCT]

[-] EMBL SM066                [GNNNTTNCCCAAAAGTGGANAGNTNTACTCGGAGNTAAGAANAGTATNCAANGTGGGTGGATTCANNTACTCAACNTATTTACTAGCACATACACAAAGTTTCTGAAAAAAGAAAAAGAAAAAAGAAAATTGGCTAGAATTAAAGCAACAAAGATGTAAAAAAATTTTAATATATGGCAACAACTCGAAAGTGAAAAATAAGCATTTCCTATTTGTTCACTTTAAACAAGAAAAAAAAGGACCTTTATTCTTAAATACCGAAAGTAGTCTACATTTACAAGAGAAAAAAACAAGTTGAGAAAATTAATAGAAACAATTTTAAAAACTTTCAATGAAAGTATAAGGAAGGTCATATATATGTGTAATTATTATGATGAACGCACTTTGATCGGTTTTCGTCGTTTTAATTCTTTTTGTTGTGGATTCTGATCAGTTTCAGTTTGATCACTAGTCTCTCNCTCGTGCCGNNTCCT]
[-] EMBL SM7221               [                                                                                      CACATACACAAAGTTTCTGAAAAAAGAAAAAGAAAAAAGAAAATTGGCTAGAATTAAAGCAACAAAGATGTAAAAAAATTTTAATATATGGCAACAACTCGAAAGTGAAAAATAAGCATTTCCTATTTGTTCACTTTAAACAAGAAAAAAAAGGACCTTTATTCTTAAATACCGAAAGTAGTCTACATTTACAAGAGAAAAAAACAAGTTGAGAAAATTAATAGAAACAATTTTAAAAACTTTCAATGAAAGTATAAGGAAGGTCATATATATGTGTAATTATTATGATGAACGCACTTTGATCGGTTTTCGTCGTTTTAATTCTTTTTGTTGTGGATTCTGATCAGTTTCAGTTTGATCACTAGTCTCTCNCTC            ]




>consensus_8759#1
GNNNTTNCCCAAAAGTGGANAGNTNTACTCGGAGNTAAGAANAGTATNCAANGTGGGTGG
ATTCANNTACTCAACNTATTTACTAGCACATACACAAAGTTTCTGAAAAAAGAAAAAGAA
AAAAGAAAATTGGCTAGAATTAAAGCAACAAAGATGTAAAAAAATTTTAATATATGGCAA
CAACTCGAAAGTGAAAAATAAGCATTTCCTATTTGTTCACTTTAAACAAGAAAAAAAAGG
ACCTTTATTCTTAAATACCGAAAGTAGTCTACATTTACAAGAGAAAAAAACAAGTTGAGA
AAATTAATAGAAACAATTTTAAAAACTTTCAATGAAAGTATAAGGAAGGTCATATATATG
TGTAATTATTATGATGAACGCACTTTGATCGGTTTTCGTCGTTTTAATTCTTTTTGTTGT
GGATTCTGATCAGTTTCAGTTTGATCACTAGTCTCTCNCTCGTGCCGNNTCCT

consensusID : consensus_8759#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 287
fasta sequence

                              [TGAGAAAATTAATAGAAACAATTTTAAAAACTTTCAATGAAAGTATAAGGAAGGTCATATATATGTGTAATTATTATGATGAACGCACTTTGATCGGTTTTCGTCGTTTTAATTCTTTTTGTTGTGGATTCTGATC-AGTTTCAGTTTGATCACTAGTATCTTCATCTTCTCGTTTAACTTTTNCTCTTCTCCTTTTTNCCNCTGTCCAGAATCTTGACTAGTAAAGAACCAACTC-TTAGAAGTATNTGATTGTTNCTTGTCTCNNCGATNCCNTTGATGGAAACTCG]

[-] EMBL CD065705             [TGAGAAAATTAATAGAAACAATTTTAAAAACTTTCAATGAAAGTATAAGGAAGGTCATATATATGTGTAATTATTATGATGAACGCACTTTGATCGGTTTTCGTCGTTTTAATTCTTTTTGTTGTGGATTCTGATC AGTTTCAG TTGA CACTAGTATCTTCATCTTCTCGTT                                                                                                                  ]
[-] EMBL SM7151               [                           AAACTNTCAATGNNAGTATNAGGNAGGTCATATATATGTGTAATTATTATGATGAACGCACTTTGNTCGGTTTTCGTCGTTTTAATTCNTTTTGTTGTGGATTCTGATC AGTTTCAGTTTGATCACTAGTATCTTCATCTTCTCGTTTAACTTTTNCTCTTCTCCTTTTTNCCNCTGTCCAGAATCTTGACTAGTAAAGAACCAACTC TTAGAAGTATNTGATTGTTNCTTGTCTCNNCGATNCCNTTGATGGAAACTCG]
[+] EMBL SM1247335            [                                                                                    GCACTTTGATCGGTTTTCGTCGTTTTAATTCTTTTTGTTGTGGATTCTGATCAAGTTTCAGTTTGATCACTAGTATCTTCATCTTCTCGTTTAACTTTT CTCTTCTCCTTTTT CCGCTGTCCAGAATCTTGACTAGTAAAGAACC ACTCTTTAGA                                               ]




>consensus_8759#2
TGAGAAAATTAATAGAAACAATTTTAAAAACTTTCAATGAAAGTATAAGGAAGGTCATAT
ATATGTGTAATTATTATGATGAACGCACTTTGATCGGTTTTCGTCGTTTTAATTCTTTTT
GTTGTGGATTCTGATCAGTTTCAGTTTGATCACTAGTATCTTCATCTTCTCGTTTAACTT
TTNCTCTTCTCCTTTTTNCCNCTGTCCAGAATCTTGACTAGTAAAGAACCAACTCTTAGA
AGTATNTGATTGTTNCTTGTCTCNNCGATNCCNTTGATGGAAACTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8759#0      -----------------GTAAATTATACTCGAA-TTAAGAATATTATACAATT--GTTGG 40
consensus_8759#1      GNNNTTNCCCAAAAGTGGANAGNTNTACTCGGAGNTAAGAANAGTATNCAANGTGGGTGG 60
consensus_8759#2      ------------------------------------------------------------
                                                                                  

consensus_8759#0      ATTCATTTACTCAACTTATTTACTAGCACATACACAAAGTTTCTTAAAAAAGAAAAAGAA 100
consensus_8759#1      ATTCANNTACTCAACNTATTTACTAGCACATACACAAAGTTTCTGAAAAAAGAAAAAGAA 120
consensus_8759#2      ------------------------------------------------------------
                                                                                  

consensus_8759#0      AAAAGAAAATTGGCTAGAATTAAAGCAACAAAGATGTAAAAAAATTTTAATATATGGCAA 160
consensus_8759#1      AAAAGAAAATTGGCTAGAATTAAAGCAACAAAGATGTAAAAAAATTTTAATATATGGCAA 180
consensus_8759#2      ------------------------------------------------------------
                                                                                  

consensus_8759#0      CAACTCGAAAGTGAAAAATAAGCATTTCCTATTTGTTCACTTTAAACAAGAAAAAAAAGG 220
consensus_8759#1      CAACTCGAAAGTGAAAAATAAGCATTTCCTATTTGTTCACTTTAAACAAGAAAAAAAAGG 240
consensus_8759#2      ------------------------------------------------------------
                                                                                  

consensus_8759#0      ACCTTTATTCTTAAATACCGAAAGTAGTCTACATTTACAAGAGAAAAAAACAAGTTGAGA 280
consensus_8759#1      ACCTTTATTCTTAAATACCGAAAGTAGTCTACATTTACAAGAGAAAAAAACAAGTTGAGA 300
consensus_8759#2      -------------------------------------------------------TGAGA 5
                                                                             *****

consensus_8759#0      AAATTAATAGAAACAATTTTAAAAACTTTCAATGAAAGTATAAGGGAAGGCATATATATG 340
consensus_8759#1      AAATTAATAGAAACAATTTTAAAAACTTTCAATGAAAGTATAAGGAAGGTCATATATATG 360
consensus_8759#2      AAATTAATAGAAACAATTTTAAAAACTTTCAATGAAAGTATAAGGAAGGTCATATATATG 65
                      ********************************************* * * **********

consensus_8759#0      GGTGATTATTATGATGGACGCGCCTTGAACGGGTTTCCGCGGTTTAATTCTTTTTGGGGG 400
consensus_8759#1      TGTAATTATTATGATGAACGCACTTTGATCGGTTTTCGTCGTTTTAATTCTTTTTGTTGT 420
consensus_8759#2      TGTAATTATTATGATGAACGCACTTTGATCGGTTTTCGTCGTTTTAATTCTTTTTGTTGT 125
                       ** ************ **** * **** *** ****  ** **************  * 

consensus_8759#0      GGGATTCAGAACAGTTAAATTTGGACCACTAGAATTTTACTCTTACCGATA--CACTTTC 458
consensus_8759#1      GG-ATTCTGATCAGTTTCAGTTTGATCACTAGTCTCTCNCTCGTGCCGNNT--CCT---- 473
consensus_8759#2      GG-ATTCTGATCAGTTTCAGTTTGATCACTAGTATCTTCATCTTCTCGTTTAACTTTTNC 184
                      ** **** ** *****  * ** ** ******  * *   ** *  **     *      

consensus_8759#0      CATTTATACTTATTTGGGTTGCACAAAACTGTGCATAAGAGGAACCAACTCTTAAGANCT 518
consensus_8759#1      ------------------------------------------------------------
consensus_8759#2      TCTTCTCCTTTTTNCCNCTGTCCAGAATCTTGACTAGTAAAGAACCAACTCTTAGAAGTA 244
                                                                                  

consensus_8759#0      TGCGAACGGACGGTGTTTATACGATGGCCGTTGTGGAAAACTAATAAAACTCATTCCATT 578
consensus_8759#1      ------------------------------------------------------------
consensus_8759#2      TNTGATTGTTNCTTGTCTCNNCGATNCCNTTGATGGAAACTCG----------------- 287
                                                                                  

consensus_8759#0      AAAAGTTTGAGAAGGGAACAAAGGTACTTTCGGGCACAATTATTATTGGGAGGGACTTTT 638
consensus_8759#1      ------------------------------------------------------------
consensus_8759#2      ------------------------------------------------------------
                                                                                  

consensus_8759#0      TGAAAAAAAAAA 650
consensus_8759#1      ------------
consensus_8759#2      ------------