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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 864 fasta sequence
[TCAATTATGTTAATGTTAATGTATATCCTTAGTAACAAGTTGAATATTGTTCCAATCATTGAAAATGAAGATTTAAGTAGTATATAACACTATCTATGAATTAAATGTAGTAAGATGATTTTTCATTGAATAATACTGATTAATACGAGAGATACCATATGATAAATAATCAAATTTCGTCTGTTCTTGAACTGATAATATGACTGCCCAAACACCCCAGAATAAATGAGCCGACAAAGCAAAATGATTCACTTCAATCAACCATTTCTCAAGTAAACTTTCATTTTCCCAATTATTATTATTATTATCATTACAATCTTGATGAATACAGTTGGAATGTGGAGTGATCGTTGTTACTGGAGTCGTGGAATATCCATTCTGAATCATTTCTGTTTGTTGATTAAATTTTTTTTCATAATAATTTTTTGCTTTTAAATATTTACTTATCCACATAAGTTGATATTCTTTTGTTGGATAGTTATCAAAATTGACAACATTTATACCAGCAAATTCACAAAAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAATCCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCAT]
[+] EMBL CD074826 [TCAATTATGTTAATGTTAATGTATATCCTTAGTAACAAGTTGAATATTGTTCCAATCATTGAAAATGAAGATTTAAGTAGTATATAACACTATCTATGAATTAAATGTAGTAAGATGATTTTTCATTGAATAATACTGATTAATACGAGAGATACCATATGATAAATAATCAAATTTCGTCTGTTCTTGAACTGATAATATGACTGCCCAAACACCCCAGAATAAATGAGCCGACAAAGCAAAATGATTCACTTCAATCAACCATTTCTCAAGTAAACTTTCATTTTCCCAATTATTATTATTATTATCATTACAATCTTGATGAATACAGTTGGAATGTGGAGTGATCGTTGTTACTGGAGTCGTGGAATATCCATTCTGAATCATTTCTGTTTGTTGATTAAATTTTTTTTCATAATAATTTTTTGCTTTTAAATATTTACTTATCCACATAAGTTGATATTCTTTTGTTGGATAGTTATCAAAATTGACAACATTTATACCAGCAAATTCACAAAAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTNTTAAGTAATTTCTCTAAATATGCCAC ]
[-] EMBL CD195633 [ TTCTTTTGTTGGATAGTTATCAAAATTGACAACATTTATACCAGCAAATTCACAAAAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAG ]
[-] EMBL CD096146 [ AAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAATCCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCAT]
[-] EMBL CD096155 [ AAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAATCCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCAT]
[-] EMBL CD096144 [ AAATGATTTCCAATATCAAATGCTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAGGCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGATTTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAATCCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCAT]
consensusID : consensus_8768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence
[TTNNTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTTATTATAACCAGTTGGTNNNNNNNNNNNNNNNNNTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCATAGTTTCACGAGTTGGTAAACTATGCAATCTAGCCACTTGTTCAATTATTAATTCACTATACTTTGACATTGCCATTAATAAATGAATAAACTAAACCATTTTGAAAAACTGCATATAATTTTTGTTCACCACCAAGTTCATGTAGTAGATACATATGTTTGATTTCATCCCACCGGTTAACAATAAAATCTGCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGGTTCATCTATTTTATTATCATGATCTAAACGAATAACAATATTAGATAAACCTTCTTCTAATGGTTTCACTTTTATATACTCTTTTGACCAAGTAGGAAAATTGATTTTATAATTTTCCAAAAATACGGATATCAATGACTGGAATAGTATTTGGTATAAAAGGC]
[-] EMBL CD081000 [TTNNTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTTATTATAACCAGTTGGTNNNNNNNNNNNNNNNNNTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGACTTCACTAGGGAATAAACGTAGCATAGTTTCACGAGTTGGTAAACTATGCAATCTAGCCACTTGTTCAATTATTAATTCACTATACTTTGACATTGCCATTAATAAATGAATAAACTAAACCATTTTGAAAAACTGCATATAATTTTTGTTCACCACCAAGTTCATGTAGTAGATACATATGTTTGATTTCATCCCACCGGTTAACAATAAAATCTGCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGGTTCATCTATTTTATTATCATGATCTAAACGAATAACAATATTAGATAAACCTTCTTCTAATGGTTTCACTTTTATATACTCTTTTGACCAAGTAGGAAAATTGATTTTATAATTTTCCAAAAATACGGATATCAATGACTGGAATAGTATTTGGTATAAAAGGC]
consensusID : consensus_8768#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[ATTGATATCCGTATTTTGGATGGTAATGATCAAGAAAATATTTGGAAAATTATAAAATCAATTTTTCCTACTTGGTCAAAAGAGTATACAAAAGTGAAACCATTAGAAGAAGGTTTATCTAATATTGTTATTCGTTTAGATCATGATAATAAAATAGATGAACCTAAAACTATTCTTATGAGAATTCGAACAAAATTAGCAGATTTTATTGTTAACCGGTGGGATGAAATCAAACATATGTATCTACTACATGAACTTGGTGGTGAACAAAATTATATGCAGTTTTTCAAAATGGTTTAGTTTATTCATTTATTAATGGATCAACTATAAGTGTGGATAAATTTTCAATGTCAAAGTATAGTGAATTAATAATTGAACAAGTGGCTAGATTGCATAGTTTACCAACTCGTGAAACTATGCTAACTTTATTCCCCTA]
[+] EMBL AI067729 [ATTGATATCCGTATTTTGGATGGTAATGATCAAGAAAATATTTGGAAAATTATAAAATCAATTTTTCCTACTTGGTCAAAAGAGTATACAAAAGTGAAACCATTAGAAGAAGGTTTATCTAATATTGTTATTCGTTTAGATCATGATAATAAAATAGATGAACCTAAAACTATTCTTATGAGAATTCGAACAAAATTAGCAGATTTTATTGTTAACCGGTGGGATGAAATCAAACATATGTATCTACTACATGAACTTGGTGGTGAACAAAATTATATGCAGTTTTTCAAAATGGTTTAGTTTATTCATTTATTAATGGATCAACTATAAGTGTGGATAAATTTTCAATGTCAAAGTATAGTGAATTAATAATTGAACAAGTGGCTAGATTGCATAGTTTACCAACTCGTGAAACTATGCTAACTTTATTCCCCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8768#0 TCAATTATGTTAATGTTAATGTATATCCTTAGTAACAAGTTGAATATTGTTCCAATCATT 60
consensus_8768#1 -TTNNTAAGT-AATTTCTCTAAATATGCC----ACTTCATTCAAGAGGACTGCTTTTGAA 54
consensus_8768#2 ------------------------------------------------------------
consensus_8768#0 GAAAATGAAGATTTAAGTAGTATATAACACTATCTATGAATTAAATGTAGTAAGATGATT 120
consensus_8768#1 GGGAATTCATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTT--ATTATAACCAGTTGGTN 112
consensus_8768#2 -----------------------------------------------------ATTGATA 7
** *
consensus_8768#0 TTTCATTGAATAATACTGATTAATACGAGAGATACCATATGATAAATAATCAAATTTCGT 180
consensus_8768#1 NNNNNNNNNNNNNNNNTCGT-ATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGAT 171
consensus_8768#2 TCCGTATTTTGGATGGTAATGATCA-AGAAAATATTTGGAAAATTATAAAATCAATTTTT 66
* * * * *** ** ** *
consensus_8768#0 CTGTTCTTGAACTGATAATATGACTGCCCAAACACCCCAGAATAAATGAGCCGACAAAGC 240
consensus_8768#1 GAATCGTTGACTTCACTAGGGAATAAACGTAGCATAGTTTCACGAGTTGGTAAACTATGC 231
consensus_8768#2 CC-TACTTGGTCAAAAGAGTATACAAAAGTGAAACCATTAGAAGAA--GGTTTATCTAAT 123
* *** * * * * * * * *
consensus_8768#0 AAAATGATTCACTTCAATCAACCATTTCTCAAGTAAACTTTCATTTTCCCAATTATTATT 300
consensus_8768#1 AATCT-AGCCACTT-GTTCAATTATTAATTCACTATACTTTGACATTGCCATTAATAAAT 289
consensus_8768#2 ATTGTTATTCGTTTAGATCA--TGATAATAAAATAGA---TGAACCTAAAACT-ATTCTT 177
* * * * ** *** * * * ** * * * * * * ** *
consensus_8768#0 ATTATTATCATTACAATCTTGATGAATACAGTTGGAATGTGGAGTGATCGTTGTTACTGG 360
consensus_8768#1 GA-ATAAACTAAACCATTTTGAAAAACT------GCATATA-ATTTTTGTTCACCACCAA 341
consensus_8768#2 ATGAGAATTCGAACAAAATTAGCAGATT---------------TTATTGTTAACCGGTGG 222
* * ** * ** * * * *
consensus_8768#0 AGTCGTGGAATATCCAT-TCTGAATCATTTCTGTTTGTTGATTAAATTTTTTTTCATAAT 419
consensus_8768#1 GTTCATGTAGTAGATACATATGTTTGATTTCATCCCACCGGTTAA---------CAATAA 392
consensus_8768#2 GATGAAATCAAACATATGTATCTACTACATGAACTTGGTGGTGAA---------CAAAAT 273
* * * * * * * * * ** ** *
consensus_8768#0 AATTTTTTGCTTTTAAATATTTACTTATCCACATAAGTTGATATTCTTTTGTTGGATAGT 479
consensus_8768#1 AATCTGCTAATTNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGGTTCATCTATT---TTAT 449
consensus_8768#2 TATATGCAGTTTTTCAAAATGGTTTAGTTTATTCATTT----ATTAATGGATC----AAC 325
** * ** * ** * *
consensus_8768#0 TATCAAAATTGACAACATTTATACCAGCAAATTCACAAAAATGATTTCCAATATCAAATG 539
consensus_8768#1 TATCATGATCTAAACGAATAACAATATTAGAT-----AAACCTTCTTCTAATG------G 498
consensus_8768#2 TATAAGTGTGGATAA-ATTTTCAATGTCAAAGT---ATAGTGAATTAATAATTGAACAAG 381
*** * * * * * * * * * * * *** *
consensus_8768#0 CTGCATGATTAAATCCACAATATTCAAAATCAATAAAATGGACTGTTTTTTCATCCTGAG 599
consensus_8768#1 TTTCACTTTTATATACTCTTTTGACCAAGT-AGGAAAATTGATTTTATAATTTTCC--AA 555
consensus_8768#2 TGGCTAGATTGCATAGTTTACCAACTCGTGAAACTATGCTAACTTTATTCCCCTA----- 436
* ** ** * * * * * * * *
consensus_8768#0 GCATAACAATATTTCCAGCTAATAAGTCATTATGACATAGGACAACTGGGGAAATTGGAT 659
consensus_8768#1 AAATACGGATATCAATGACTGGAATAGTATT-TGGTATAAAAGGC--------------- 599
consensus_8768#2 ------------------------------------------------------------
consensus_8768#0 TTTTAAGTAATTTCTCTAAATATGCCACTTCATTCAAGAGGACTGCTTTTGAAGGGAATT 719
consensus_8768#1 ------------------------------------------------------------
consensus_8768#2 ------------------------------------------------------------
consensus_8768#0 CATTTTTAAGTCTTTCAAATTTTAGTTTGTCGTCATTATAACCAGTTGGTAATTTTTCAA 779
consensus_8768#1 ------------------------------------------------------------
consensus_8768#2 ------------------------------------------------------------
consensus_8768#0 TCCATTTTCGTATTGTTGGAAATAGTACAGGTTTTGTATAAAGTTTTGATGAATCGTTGA 839
consensus_8768#1 ------------------------------------------------------------
consensus_8768#2 ------------------------------------------------------------
consensus_8768#0 CTTCACTAGGGAATAAACGTAGCAT 864
consensus_8768#1 -------------------------
consensus_8768#2 -------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||