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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8769#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 905 fasta sequence
[CTCGAGGCCAAAAATTCGGCACGAGGGGGAAACAGATCTGTCCTTTTTACCTAAAGAATCGATGCATATATGGCGATCGATGCATTAATTCTCATTGTTTACCAGAAAACAAATTGTCCCAGACTTCAAAATCTATTCCTTGTAAGTTCTATCTACAAGGCTACTGTCACAATGGGATCAAATGTACATTTTCACACAATATAAATGGGTTTCCGCATAATCTGCGCATCCATAATGTATTTTCGAAGTCCTATCTGAATAAGGATAAGCTACAATTCTATAACAAATGATCAAATATGGCCTACTCAAACAAGTGTAAACTACCTGAGCGGAGTCCACGTGATTGTTGTAACCAGTGGTTAGAGACTCAAAATCGTTTGGAATGGCACAGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTNTTACATAAATCACANATAACTTACTNNTCTCCATGTACTTGGGATACGCGCATCANATATNGTATCTAATGCATCACGTAAACTNTNCGACATTATAATCGTACCATCGATTGCTAA-TTTAAATCACTCNATGNTGTACGAACATTGNNATAT-ACACGTNGCATACGATCAAACTTCTGNTTTNAAAANTATATGAGNNGNNNTTAAATGATCCATTTAANTNAATCGTTCTTTACCCCTGATCNGNNATANGA]
[+] EMBL CD080602 [CTCGAGGCCAAAAATTCGGCACGAGGGGGAAACAGATCTGTCCTTTTTACCTAAAGAATCGATGCATATATGGCGATCGATGCATTAATTCTCATTGTTTACCAGAAAACAAATTGTCCCAGACTTCAAAATCTATTCCTTGTAAGTTCTATCTACAAGGCTACTGTCACAATGGGATCAAATGTACATTTTCACACAATATAAATGGGTTTCCGCATAATCTGCGCATCCATAATGTATTTTCGAAGTCCTATCTGAATAAGGATAAGCTACAATTCTATAACAAATGATCAAATATGGCCTACTCAAACAAGTGTAAACTACCTGAGCGGAGTCCACGTGATTGTTGTAACCAGTGGTTAGAGACTCAAAATCGTTTGGAATGGCACAGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTNTTACATAAATCACANATAACTTACTNNTCTCCATGTACTTGGGATACGCGCATCANATATNGTATCTAATGCATCACGTAAACTNTNCGACATTATAATCGTACCATCGATTGCTAA TTTAAATCACTCNATGNTGTACGAACATTGNNATAT ACACGTNGCATACGATCAAACTTCTGNTTTNAAAANTATATGAGNNGNNNTTAAATGATCCATTTAANTNAATCGTTCTTTACCCCTGATCNGNNATANGA]
[-] EMBL CD073090 [ TGTAACCAGTGGTTAGAGACTCAAAATCGTTTGGAATGGCACAGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTTTTACATAAATCACAAATAACTTACTTTTCTCCATGTACTTGGGATACGCGCATCAAATATGTTATCTAATGCATCACGTAAACTTTCCGACATTATAATCGTACCATCGATTGCTAATTTTAAATCACTCAATGTTGTACGAACATTG GATATAACACGTTGCATACGATC AACTTCTTGTTTTAAAAATATATGA ]
consensusID : consensus_8769#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 824 fasta sequence
[GAGCCAAAAATTCGGCACGAGGGCAAGGGGAAGCCATTGACTCAAAATATCCAAACAGTCAGCCAAACAATCTCACCAGATTCTTAACTAACACTGACACTAATATTGCCAGTAAAACTATTAATAAGCCAATATCACCTGGTTTAACAGGTTTTTCATTCCGTCAGACTGAAAAAGTAATCAAAATGCAATCATCTCGATATCGTGAATGGGGATATGAAGCTTCAGAAATTTATAGCTCCTACGATCAGCTGAATGGAAAAGAGCTATCTATATATCGTTCATCTGGAAATTTTGTTCCTGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTTTTACATAAATCACAAATAACTTACTTTTCTCCATGTACTTGGGATACGCGCATCANATATGTTATCTAATGCATCACGTAAACTTTCCGACATTATAATCGTACCATCGATTGCTAATTNTAAATCACTCAATGTTGTACGAACATTGGATATAACACGTTGCATACGATCAACTTCTT-TGTNTAAAATATATGAAGTGGTTNT-AATGATCCCATTTAANTAAATCG-TCTTTTACCTGGNATCANNGAT-AAGATATGAGNA]
[+] EMBL CD082666 [GAGCCAAAAATTCGGCACGAGGGCAAGGGGAAGCCATTGACTCAAAATATCCAAACAGTCAGCCAAACAATCTCACCAGATTCTTAACTAACACTGACACTAATATTGCCAGTAAAACTATTAATAAGCCAATATCACCTGGTTTAACAGGTTTTTCATTCCGTCAGACTGAAAAAGTAATCAAAATGCAATCATCTCGATATCGTGAATGGGGATATGAAGCTTCAGAAATTTATAGCTCCTACGATCAGCTGAATGGAAAAGAGCTATCTATATATCGTTCATCTGGAAATTTTGTTCCTGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTTTTACATAAATCACAAATAACTTACTTTTCTCCATGTACTTGGGATACGCGCATCANATATGTTATCTAATGCATCACGTAAACTTTCCGACATTATAATCGTACCATCGATTGCTAATTNTAAATCACTCAATGTTGTACGAACATTGGATATAACACGTTGCATACGATCAACTTCTT TGTNTAAAATATATGAAGTGGTTNT AATGATCCCATTTAANTAAATCG TCTTTTACCTGGNATCANNGAT AAGATATGAGN ]
[+] EMBL CD155100 [ TGACTCAAAATATCCAAACAGTCAGCCAAACAATCTCACCAGATTCTTAACTAACACTGACACTAATATTGCCAGTAAAACTATTAATAAGCCAATATCACCTGGTTTAACAGGTTTTTCATTCCGTCAGACTGAAAAAGTAATCAAAATGCAATCATCTCGATATCGTGAATGGGGATATGAAGCTTCAGAAATTTATAGCTCCTACGATCAGCTGAATGGAAAAGAGCTATCTATATATCGTTCATCTGGAAATTTTGTTCCTGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTTTTACATAAATCACANATAACTTACTTT ]
[+] EMBL CD154964 [ TGACTCAAAATATCCAAACAGTCAGCCAAACAATCTCACCAGATTCTTAACTAACACTGACACTAATATTGCCAGTAAAACTATTAATAAGCCAATATCACCTGGTTTAACAGGTTTTTCATTCCGTCAGACTGAAAAAGTAATCAAAATGCAATCATCTCGATATCGTGAATGGGGATATGAAGCTTCAGAAATTTATAGCTCCTACGATCAGCTGAATGGAAAAGAGCTATCTATATATCGTTCATCTGGAAATTTTGTTCCTGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTTTTACATAAATCACAAATAACTTACTTT ]
[-] EMBL CD076262 [ TCCTACGATCAGCTGAATGGAAAAGAGCTATCTATATATCGTTCATCTGGAAATTTTGTTCCTGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCACCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAAAGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGGTTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAATCAATAGTCAGATTCGTGTTCTTACTTTACATTTTTACATAAATCACAAATAACTTACTTTTCTCCATGTACTTGGGATACGCGCATCAAATATGTTATTTAATGCATCACGTAAACTTTCCGACATTATAATCGTACCATCGATTGCTAATTTTAAATCACTCAATGTTGTACGAACATTGGATATAACACGTTGCATACGATCAACTTCTTGTTTTAAAAATATATGAAGTGGTTTTAAATGAT CCATTTTAATTAATCGTTCTTTTACCTGGATTCAGGAATAAAGATATGAGta]
consensusID : consensus_8769#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence
[ATTTTAATTGAAATGACGTAGAACTTTTCATTTATTCAGCCAATTCATCTCATAACTACCGCAGAAATTTGAAGGAAGCCATTGACTCAAAATATCCAAACAGTCAGCCAAACAATCTCACCAGATTCTTAACTAACACTGACACTAATATTGCCAGTAAAACTATTAATAAGCCAATATCACCTGGTTTAACAGGTTTTTCATTCCGTCAGACTGAAAAAGTAATCAAAATGCAATCATCTCGATATCGTGAATGGGGATATGAAGCTTCAGAAATTTATAGCTCCTACGATCAGCTGAATGGAAAAGAGCTATCTATATATCGTTCATCTGGAAATTTTGTTCCTGGTACGATTCCTTTATCTTCACCGTCAGAAAATTTATGTACATTTTCTTAAAAATGAACTGTATTATTCTTGTATAATGTCTCTAAAATAACTCTATATCAATTCATTTACTTATTGATTACAAACTATAGCCCAATATTTTCGTGTCCCAGGGTTTCCGCATAATCTGCGCATCCATAATGTATTTTCGAAGTCCTATCTGAATAAGGATAAGCTANCATTCTATAACANATGATCAAATATGGCCTACTCANAACAGTGTAAACTACCTGAGCGGAGT]
[+] EMBL CD078627 [ATTTTAATTGAAATGACGTAGAACTTTTCATTTATTCAGCCAATTCATCTCATAACTACCGCAGAAATTTGAAGGAAGCCATTGACTCAAAATATCCAAACAGTCAGCCAAACAATCTCACCAGATTCTTAACTAACACTGACACTAATATTGCCAGTAAAACTATTAATAAGCCAATATCACCTGGTTTAACAGGTTTTTCATTCCGTCAGACTGAAAAAGTAATCAAAATGCAATCATCTCGATATCGTGAATGGGGATATGAAGCTTCAGAAATTTATAGCTCCTACGATCAGCTGAATGGAAAAGAGCTATCTATATATCGTTCATCTGGAAATTTTGTTCCTGGTACGATTCCTTTATCTTCACCGTCAGAAAATTTATGTACATTTTCTTAAAAATGAACTGTATTATTCTTGTATAATGTCTCTAAAATAACTCTATATCAATTCATTTACTTATTGATTACAAACTATAGCCCAATATTTTCGTGTCCCAGGGTTTCCGCATAATCTGCGCATCCATAATGTATTTTCGAAGTCCTATCTGAATAAGGATAAGCTANCATTCTATAACANATGATCAAATATGGCCTACTCANAACAGTGTAAACTACCTGAGCGGAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8769#0 ------------------------------------------CTCGAGGCCAAAAATTCG 18
consensus_8769#1 ----------------------------------------------GAGCCAAAAATTCG 14
consensus_8769#2 ATTTTAATTGAAATGACGTAGAACTTTTCATTTATTCAGCCAATTCATCTCATAACTACC 60
** ** * *
consensus_8769#0 GCACGAGGGGGAAACAGATCTGTCCTTTTTACCTAAAGAATCGATGCATATATGGCGATC 78
consensus_8769#1 GCACGAGGGCAAGGGGAAGCCAT-----TGACTCAAAATATCCAAACA---------GTC 60
consensus_8769#2 GCA-GAAATTTGAAGGAAGCCAT-----TGACTCAAAATATCCAAACA---------GTC 105
*** ** * * * * ** *** *** * ** **
consensus_8769#0 GATGCATTAATTCTCATTGTTTACCAGAAAACAAATTGTCCCAGACTTCAAAATCTATTC 138
consensus_8769#1 AGCCAAACAATC--------TCACCAGATTCTTAACTAACACTGACACTAA----TATTG 108
consensus_8769#2 AGCCAAACAATC--------TCACCAGATTCTTAACTAACACTGACACTAA----TATTG 153
* *** * ****** ** * * * *** ** ****
consensus_8769#0 CTTGTAAGTTCTATCTACAAGGCTACTGTCACAATGGGATCAAATGTACATTTTCACACA 198
consensus_8769#1 CCAGTAAAA-CTATTAATAAG-CCAATATCACC-TGGTTTAACAGGT---TTTTCATTCC 162
consensus_8769#2 CCAGTAAAA-CTATTAATAAG-CCAATATCACC-TGGTTTAACAGGT---TTTTCATTCC 207
* **** **** * *** * * * **** *** * * * ** ****** *
consensus_8769#0 ATATAAATGGGTTTCCGCATAATCTGCGCATCCATAATGTATTTTCGAAGTCCTATCTGA 258
consensus_8769#1 GTCAGACTGAAA----AAGTAATCAAA------ATGCAATCATCTCGATATCG----TGA 208
consensus_8769#2 GTCAGACTGAAA----AAGTAATCAAA------ATGCAATCATCTCGATATCG----TGA 253
* * ** ***** ** * * **** ** ***
consensus_8769#0 ATAAGGATAAGCTACAATTCTATAACAAATGATCAAATATGGCCTACTCAAACAAGTGTA 318
consensus_8769#1 ATGGGGATA---TGAAGCTTCAGAA---------ATTTATAGCTCCTACGATCAG----- 251
consensus_8769#2 ATGGGGATA---TGAAGCTTCAGAA---------ATTTATAGCTCCTACGATCAG----- 296
** ***** * * * * ** * *** ** * * **
consensus_8769#0 AACTACCTGAGCGGAGTCCACGTGATTGTTGTAACCAGTGGTTAGAGACTCAAAATCGTT 378
consensus_8769#1 ------CTGAATGGAAAAGA-GCTATCTATATATCGTTCATCTGGAAATT-----TTGTT 299
consensus_8769#2 ------CTGAATGGAAAAGA-GCTATCTATATATCGTTCATCTGGAAATT-----TTGTT 344
**** *** * * ** * ** * * ** * * * ***
consensus_8769#0 TGGAATGGCACAGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCA 438
consensus_8769#1 C---------CTGGCGTTTATATACAGTTGGAGATATAAAACTACCAAGTCAATGACGCA 350
consensus_8769#2 C--------------------------CTGG-----TACGATTCCTTTATC-----TTCA 368
*** ** * * * ** **
consensus_8769#0 CCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAA 498
consensus_8769#1 CCGGTTTAAAATTTGAAAGTTCTCCATGAGAACTGGATTTCCTGAACTCGATATTGTAAA 410
consensus_8769#2 CCGTCAGAAAATTTA-----TGTACAT----------TTTCTTAAAAATGA-ACTGTA-- 410
*** ******* * * *** **** * ** ** * ****
consensus_8769#0 AGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGG 558
consensus_8769#1 AGGTCAGTCAGGTTCAATGTTAGGCAACAATCTCAATTTTAATTGAAGTAACTATTATGG 470
consensus_8769#2 ---TTATTCTTGTATAATGTCTCTAAAATAACTCTATATCAATTCATTTACTTATT--GA 465
* * ** ** ***** ** * *** ** * **** * ** **** *
consensus_8769#0 TTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAAT 618
consensus_8769#1 TTGTGGTTTTTAAATTGGCCTCGATTGTTCAGAACTAAACAAATTTTTCCGTCTTGGAAT 530
consensus_8769#2 TTACAAACTATAG------CCCAATATTTTCGTGTC---CCAGGGTTTCCGCAT------ 510
** * ** * * ** ** * * * ****** *
consensus_8769#0 CAATAGTCAGATTCGTGTTCTTACTTTACATTNTTACATAAATCACANATAACTTACTNN 678
consensus_8769#1 CAATAGTCAGATTCGTGTTCTTACTTTACATTTTTACATAAATCACAAATAACTTACTTT 590
consensus_8769#2 -AATCTGCGCATCCATAATGTATTTTCGAAGTCCTATCTGAATAA-GGATAAGCTANCAT 568
*** * ** * * * * ** * * ** * *** * **** **
consensus_8769#0 TCTCCATGTACTTGGGATACGCGCATCANATATNGTATCTAATGCATCACGTAAACTNTN 738
consensus_8769#1 TCTCCATGTACTTGGGATACGCGCATCANATATGTTATCTAATGCATCACGTAAACTTTC 650
consensus_8769#2 TCTATA----------ACANATG-ATCAAATATGGCCTACTCANAACAGTGTAAACTACC 617
*** * * * * **** **** * * *******
consensus_8769#0 CGACATTATAATCGTACCATCGATTGCTAATTT-AAATCACTCNATGNTGTACGAACATT 797
consensus_8769#1 CGACATTATAATCGTACCATCGATTGCTAATTNTAAATCACTCAATGTTGTACGAACATT 710
consensus_8769#2 TGA--GCGGAGT------------------------------------------------ 627
** * *
consensus_8769#0 GNNATATACACGTNGCATACGATCAAACTTCTGNTTTNAAAANTATATGAGNNGNNNTTA 857
consensus_8769#1 GGATATAACACGTTGCATACGATCAACTTCTTTGTNTAAAA--TATATGAAGTGGTTNTA 768
consensus_8769#2 ------------------------------------------------------------
consensus_8769#0 AATGATCCATTTAANTNAATCGTTCTTTACCCCTGATCNGNNATANGA-------- 905
consensus_8769#1 ATGATCCCATTTAANTAAATCGTCTTTTACCTGGNATCANNGATAAGATATGAGNA 824
consensus_8769#2 --------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||