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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8802#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 491 fasta sequence
[CTTGGCATTTGTTTCTTAGAAGCCGTCTTCGGGATGACCGCAGAGGAAGCGCAACTCATACTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTGCCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAAAGTTGGTCT-AAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGGAATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGGATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTTGAGTGCAATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGGTTTTACTAGATGCAGACAATATGAATATCCATCAAACATGTTGATCGCCTGTTACTATTCACCCAAAGTGAAGAGTGGTCC]
[+] EMBL CD163177 [CTTGGCATTTGTTTCTTAGAAGCCGTCTTCGGGATGACCGCAGAGGAAGCGCAACTCATACTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTGCCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAAAGTTGGTCT AAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGGAATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGGATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTGGAGTGCAATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGGTTTTACTAGATGCAGACAATATGAATATCCATCAAACA ]
[+] EMBL CD112827 [CTTGGCATTTGTTTCTTAGAAGCCGTCTTCGGGATGACCGCAGAGGAAGCGCAACTCATACTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTGCCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAAAGTTGGTCT AAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGGAATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGGATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAG ]
[-] EMBL CD095352 [ CTTCGGGATGACCGCAGAGGAAGCGCAACTCATACTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCA ]
[+] EMBL CD097757 [ AATGAGTATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTGCCAGCGGAGGAAACACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAAAGTTGGTCTAAAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGGAATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGGATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTTGAGTGCAATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGGTTTTACTAGATGCAGACAATATGAATATCCATCAAACATGTTGATCGCCTGTTACTATTCACCCAAAGTGAAGAGTGGTCC]
[-] EMBL CD114811 [ GAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTGCCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGTTGCCGCTGCTCAAAGTTGGTCT AAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGGAATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGGATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTTGAGTGCAATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGG ]
consensusID : consensus_8802#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 348 fasta sequence
[TAGTTTACAAGGCGGATAGTTTCAATGCAGAAAACGGCCTATCGTGGGATGCGGTTTTACTAGATGCAGAACATTATGAATATTCCAT-CAAACATGTTGATCGCCCTGTTACTATTCACCCAAAATGAAGATGTGGTCCACCCATACATTGACG-CAACGAACAGATAGATGCAAGTATTCTGAATGCGAATCTGAATAAAATAAAAGGCAAAGGGAAGTAGGAGTTAAAGGAAGAGAGGTGAAAAATTAAAT-CAGTTGTTTCGTTATATTTAATCGACAATTTAATCAGTACTAATAATTTTAAATAAATAATGATGCTGCATAAAAAAAAAAGTCGGAAACTCGAGA]
[-] EMBL AI882670 [TAGTTTACAAGGCGGATAGTTTCAATGCAGAAAACGGCCTATCGTGGGATGCGGTTTTACTAGATGCAGAACATTATGAATATTCCAT CAAACATGTTGATCGCCCTGTTACTATTCACCCAAAATGAAGATGTGGTCCACCCATACATTGACG CAACGAACAGATAGATGCAAGTATTCTGAATGCGAATCTGAATAAAATAAAAGGCAAAGGGAAGTAGGAGTTAAAGGAAGAGAGGTGAAAAATTAAAT CAGTTGTTTCGTTATATTTAATCGACAATTTAATCAGTACTAATAATTTTAAATAAATAATG ]
[-] EMBL AI395850 [ cbcgacACA TATGTATATACCCTCCAAACATGTTGATCG CCTGTTACTATTCACCCAAAGTGAAGA GT GTCCA CCATACACTGACGCCAACGAACAGGAAGATGCAAGTA TCTGAATGCGAATCTGAATAAAATAAAAGGCAAAGGGAAGTAGGAGTTAAAGGAAGAGAGGTGAAAAATTAAATCCAGTTGTTTCGTTATATTTAAT GACAATTTAATCAGTACTAATAATTTTAAATAAATAATGATGCTGCATAAAAAAAAAAGTCGGAAACTCGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8802#0 CTTGGCATTTGTTTCTTAGAAGCCGTCTTCGGGATGACCGCAGAGGAAGCGCAACTCATA 60
consensus_8802#1 ---------------------------------------------------TAGTTTACA 9
* * * *
consensus_8802#0 CTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTG 120
consensus_8802#1 ----AGGCGGATAGTTTCAATGCAGAAAACGG---CCTATCGTGGGATGCGGTTTTACTA 62
* * *** * ** ** * ** * *** * * ** ** ** *
consensus_8802#0 CCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAA 180
consensus_8802#1 GATGCAGAACATTATGAATATTCCATCAAACATGTTGATCGCCCTGTTACTATTCACCCA 122
** ** * * * * * * * *** * * * * * * *
consensus_8802#0 AGTTGGTCTAAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGG 240
consensus_8802#1 AAATG------AAGATGTGGTCCACCCATACATTGACGCAACGAACA----GATAGATGC 172
* ** ** *** **** * * ** * * * * * ** ***
consensus_8802#0 AATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGG 300
consensus_8802#1 AAGTATTCTGAATGCGAATCTGA-ATAAAATAAAAGGCAAAGGGAA--GTAGGAGTTAAA 229
** * ** * * ** * ** *** ** *** ** * * *
consensus_8802#0 ATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTTGAGTGC 360
consensus_8802#1 GGAAGAGAGGTGAAAAATTAAATCAGTTGTTTCGTTATATTTAAT-CGACAATTTAAT-C 287
*** *** * *** * * * * ** * * ** ** * * *
consensus_8802#0 AATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGGTTTTACTAGA 420
consensus_8802#1 AGTACTAATAATTTTAAA---TAAATAATGATGCTGCATAAAAAAAAAAGTCGGA--AAC 342
* ** * * ** * * ** * * * * * * ** * *
consensus_8802#0 TGCAGACAATATGAATATCCATCAAACATGTTGATCGCCTGTTACTATTCACCCAAAGTG 480
consensus_8802#1 TCGAGA------------------------------------------------------ 348
* ***
consensus_8802#0 AAGAGTGGTCC 491
consensus_8802#1 -----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||